MD10G1073200.v1.1

isoflavone

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
Physical Location & Seq
Forward (+)
10182223 .. 10184740
2518 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1073200.v1.1.491

Sequence Viewer

Length: 1032 bp
ATGGACTTCTCAGCTATCCACTTATTCCTCATCTCCCTAGGAACCCTCTCACTCGCCTTCTTTCTCAAACTCATCCCATTCCGATTCCCCCCAATCCCATTCCGGATGGCATCCAAGTCCAAAATCCTCTTCATTGGTGGCACCGGCTACATTGGAAAGTTCATTGTCGAGGCTAGCGCCAAGGCCGGCCACTCCACCTACGTTCTGGTCCGAGAAACTACCCTCTCCAACCCGGCAAAGTCCAAAGTCATCGAGAACTTCAAGGCTCTGGGCGTCAACTTCGTCCTGGGTGATCTGTACAATCACGAGAGCTTGGTGAAGGCGATCAAGCAAGTCGACGTGGTGATCTCGACGGTGGGGCACGCGCAGTTGGCTGATCAGGGCAAGATCATTGCTGCCATTAAAAAAGCAGGCAATGTTAAGAGATTTTTCCCCTCGGAGTTTGGAAATGACGTCGACCGAGTTCACGCTGTTGAGCCTGCCAAATCGGCGTTTGAGACCAAGGCCAAGATTCGCAGAGCTGTGGAGGCTGAGGGGATTCCTTACACCTATGTGTCCTCCAACTTCTTTGCTGGTTACTTCTTACCTACTTTGAACCAGCCCGGAGCTTCTTCCCCTCCTAGGGACAAAGTCGTCATTTTGGGCGATGGAAACCCCAAAGCAATTTTCAACAAGGAAGACGACATTGGGACGTACACAATTAGGGCAGTGGATGACCCAAGAACCTTGAACAAAGTCCTCTACATCAGGCCCCCTGCCAACACCATCTCATTCAATGAGCTTGTCTCTCTGTGGGAGAAGAAGATTGGCAAAACCCTCGAGAGAATCTATGTCCCGGAGGAGCAGCTGCTCAAGAACATCCAAGAGGCAGTTGTGCCGCTCAATGTGATACTATCAATTGGCCACTCAGTTTTTGTGAAGGGAGACCACACTAACTTTGAGATCGAGCCCTCATTTGGCGTGGAAGCCACAGCCCTTTACCCTGATGTCAAATACACCACCGTCGAGGAGTACCTCAACCAGTTTGTCTGA

Protein Analysis

344

Amino Acids

37.96

Weight (kDa)

8.92

Isoelectric Point (pI)

25.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NmrA PF05368 39 - 339 4.7e-98 NmrA-like family
Epimerase PF01370 42 - 121 8.3e-09 NAD dependent epimerase/dehydratase family
NAD_binding_10 PF13460 46 - 187 1.8e-13 NAD(P)H-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 632
AatII GACGTC 1 cut(s) 456
AccB1I GGYRCC 1 cut(s) 140
AccBSI CCGCTC 1 cut(s) 880
AccI GTMKAC 2 cut(s) 336, 456
AccII CGCG 1 cut(s) 365
AccIII TCCGGA 1 cut(s) 102
AciI CCGC 1 cut(s) 878
AcoI YGGCCR 2 cut(s) 187, 901
AcyI GRCGYC 2 cut(s) 273, 453
AfaI GTAC 3 cut(s) 299, 695, 1013
AfiI CCNNNNNNNGG 3 cut(s) 621, 622, 956
AgsI TTSAA 5 cut(s) 262, 595, 670, 730, 775
AjiI CACGTC 1 cut(s) 340
AjnI CCWGG 1 cut(s) 285
AjuI GAANNNNNNNTTGG 6 cut(s) 113, 145, 650, 669, 682, 701
AleI CACNNNNGTG 1 cut(s) 551
AluBI AGCT 6 cut(s) 14, 312, 521, 608, 781, 847
AluI AGCT 6 cut(s) 14, 312, 521, 608, 781, 847
Alw26I GTCTC 3 cut(s) 491, 790, 918
Ama87I CYCGRG 1 cut(s) 818
Aor13HI TCCGGA 1 cut(s) 102
AoxI GGCC 5 cut(s) 183, 187, 504, 749, 901
ApeKI GCWGC 3 cut(s) 395, 844, 847
AspA2I CCTAGG 2 cut(s) 37, 620
AspLEI GCGC 2 cut(s) 179, 367
AspS9I GGNCC 2 cut(s) 208, 750
AsuC2I CCSGG 3 cut(s) 233, 603, 836
AsuHPI GGTGA 3 cut(s) 302, 328, 355
AsuNHI GCTAGC 1 cut(s) 173
AvaI CYCGRG 1 cut(s) 818
AvaII GGWCC 1 cut(s) 208
AvrII CCTAGG 2 cut(s) 37, 620
BaeGI GKGCMC 1 cut(s) 363
BalI TGGCCA 1 cut(s) 903
BanI GGYRCC 1 cut(s) 140
BanII GRGCYC 1 cut(s) 951
BauI CACGAG 1 cut(s) 305
BbsI GAAGAC 1 cut(s) 684
BbvCI CCTCAGC 1 cut(s) 531
BbvI GCAGC 3 cut(s) 382, 834, 856
BccI CCATC 3 cut(s) 100, 641, 773
BcgI CGANNNNNNTGC 2 cut(s) 799, 833
BciT130I CCWGG 1 cut(s) 287
BclI TGATCA 1 cut(s) 376
BcnI CCSGG 3 cut(s) 233, 603, 836
BcoDI GTCTC 3 cut(s) 491, 790, 918
BfaI CTAG 3 cut(s) 38, 174, 621
BfoI RGCGCY 1 cut(s) 180
BglI GCCNNNNNGGC 1 cut(s) 488
BisI GCNGC 4 cut(s) 396, 845, 848, 878
BlnI CCTAGG 2 cut(s) 37, 620
BlsI GCNGC 4 cut(s) 397, 846, 849, 879
Bme1390I CCNGG 4 cut(s) 233, 287, 603, 836
Bme18I GGWCC 1 cut(s) 208
BmeT110I CYCGRG 1 cut(s) 818
BmgBI CACGTC 1 cut(s) 340
BmgT120I GGNCC 2 cut(s) 208, 750
BmiI GGNNCC 3 cut(s) 43, 142, 752
BmrFI CCNGG 4 cut(s) 233, 287, 603, 836
BmsI GCATC 1 cut(s) 119
BmtI GCTAGC 1 cut(s) 177
BpiI GAAGAC 1 cut(s) 684
BplI GAGNNNNNCTC 2 cut(s) 770, 802
Bpu10I CCTNAGC 1 cut(s) 531
BpuEI CTTGAG 1 cut(s) 836
BpuMI CCSGG 3 cut(s) 233, 603, 836
BsaHI GRCGYC 2 cut(s) 273, 453
BsaI GGTCTC 2 cut(s) 491, 918
BsaJI CCNNGG 6 cut(s) 37, 180, 286, 435, 501, 620
BsaWI WCCGGW 1 cut(s) 102
Bsc4I CCNNNNNNNGG 3 cut(s) 621, 622, 956
Bse118I RCCGGY 2 cut(s) 143, 185
Bse1I ACTGG 1 cut(s) 1021
Bse3DI GCAATG 2 cut(s) 390, 421
BseAI TCCGGA 1 cut(s) 102
BseBI CCWGG 1 cut(s) 287
BseDI CCNNGG 6 cut(s) 37, 180, 286, 435, 501, 620
BseGI GGATG 5 cut(s) 72, 110, 111, 718, 858
BseLI CCNNNNNNNGG 3 cut(s) 621, 622, 956
BseMI GCAATG 2 cut(s) 390, 421
BseMII CTCAG 3 cut(s) 24, 522, 921
BseNI ACTGG 1 cut(s) 1021
BseRI GAGGAG 2 cut(s) 854, 1022
BseSI GKGCMC 1 cut(s) 363
BseXI GCAGC 3 cut(s) 382, 834, 856
Bsh1236I CGCG 1 cut(s) 365
Bsh1285I CGRYCG 1 cut(s) 460
BshFI GGCC 5 cut(s) 185, 189, 506, 751, 903
BshNI GGYRCC 1 cut(s) 140
BsiEI CGRYCG 1 cut(s) 460
BsiHKCI CYCGRG 1 cut(s) 818
BsiSI CCGG 6 cut(s) 103, 144, 186, 233, 603, 836
BslFI GGGAC 3 cut(s) 638, 703, 818
BslI CCNNNNNNNGG 3 cut(s) 621, 622, 956
BsmAI GTCTC 3 cut(s) 491, 790, 918
BsmFI GGGAC 3 cut(s) 638, 703, 818
BsnI GGCC 5 cut(s) 185, 189, 506, 751, 903
Bso31I GGTCTC 2 cut(s) 491, 918
BsoBI CYCGRG 1 cut(s) 818
Bsp1286I GDGCHC 2 cut(s) 363, 951
Bsp13I TCCGGA 1 cut(s) 102
Bsp1407I TGTACA 1 cut(s) 297
Bsp143I GATC 6 cut(s) 292, 324, 345, 376, 387, 942
BspACI CCGC 1 cut(s) 878
BspANI GGCC 5 cut(s) 185, 189, 506, 751, 903
BspCNI CTCAG 3 cut(s) 23, 523, 920
BspEI TCCGGA 1 cut(s) 102
BspFNI CGCG 1 cut(s) 365
BspLI GGNNCC 3 cut(s) 43, 142, 752
BspOI GCTAGC 1 cut(s) 177
BspT107I GGYRCC 1 cut(s) 140
BspTNI GGTCTC 2 cut(s) 491, 918
BsrBI CCGCTC 1 cut(s) 880
BsrDI GCAATG 2 cut(s) 390, 421
BsrFI RCCGGY 2 cut(s) 143, 185
BsrGI TGTACA 1 cut(s) 297
BsrI ACTGG 1 cut(s) 1021
BssAI RCCGGY 2 cut(s) 143, 185
BssECI CCNNGG 6 cut(s) 37, 180, 286, 435, 501, 620
BssMI GATC 6 cut(s) 292, 324, 345, 376, 387, 942
BssNI GRCGYC 2 cut(s) 273, 453
BssSI CACGAG 1 cut(s) 305
BssT1I CCWWGG 4 cut(s) 37, 180, 501, 620
Bst2BI CACGAG 1 cut(s) 305
Bst2UI CCWGG 1 cut(s) 287
Bst4CI ACNGT 2 cut(s) 355, 1003
Bst6I CTCTTC 1 cut(s) 134
BstACI GRCGYC 2 cut(s) 273, 453
BstAUI TGTACA 1 cut(s) 297
BstC8I GCNNGC 5 cut(s) 175, 187, 363, 412, 480
BstDEI CTNAG 3 cut(s) 10, 531, 907
BstF5I GGATG 5 cut(s) 72, 110, 111, 718, 858
BstFNI CGCG 1 cut(s) 365
BstH2I RGCGCY 1 cut(s) 180
BstHHI GCGC 2 cut(s) 179, 367
BstKTI GATC 6 cut(s) 295, 327, 348, 379, 390, 945
BstMAI GTCTC 3 cut(s) 491, 790, 918
BstMBI GATC 6 cut(s) 292, 324, 345, 376, 387, 942
BstMCI CGRYCG 1 cut(s) 460
BstMWI GCNNNNNNNGC 3 cut(s) 371, 488, 527
BstNI CCWGG 1 cut(s) 287
BstSCI CCNGG 4 cut(s) 231, 285, 601, 834
BstSLI GKGCMC 1 cut(s) 363
BstUI CGCG 1 cut(s) 365
BstV1I GCAGC 3 cut(s) 382, 834, 856
BstV2I GAAGAC 1 cut(s) 684
BsuRI GGCC 5 cut(s) 185, 189, 506, 751, 903
BtgZI GCGATG 1 cut(s) 660
BtrI CACGTC 1 cut(s) 340
BtsCI GGATG 5 cut(s) 72, 110, 111, 718, 858
BtsI GCAGTG 1 cut(s) 714
BtsIMutI CAGTG 1 cut(s) 714
Cac8I GCNNGC 5 cut(s) 175, 187, 363, 412, 480
CfoI GCGC 2 cut(s) 179, 367
Cfr10I RCCGGY 2 cut(s) 143, 185
Cfr13I GGNCC 2 cut(s) 208, 750
CseI GACGC 1 cut(s) 262
Csp6I GTAC 3 cut(s) 298, 694, 1012
CviQI GTAC 3 cut(s) 298, 694, 1012
DdeI CTNAG 3 cut(s) 10, 531, 907
DpnI GATC 6 cut(s) 294, 326, 347, 378, 389, 944
DpnII GATC 6 cut(s) 292, 324, 345, 376, 387, 942
DrdI GACNNNNNNGTC 1 cut(s) 632
DseDI GACNNNNNNGTC 1 cut(s) 632
EaeI YGGCCR 2 cut(s) 187, 901
Eam1104I CTCTTC 1 cut(s) 134
EarI CTCTTC 1 cut(s) 134
Eco130I CCWWGG 4 cut(s) 37, 180, 501, 620
Eco24I GRGCYC 1 cut(s) 951
Eco31I GGTCTC 2 cut(s) 491, 918
Eco47I GGWCC 1 cut(s) 208
Eco88I CYCGRG 1 cut(s) 818
EcoO109I RGGNCCY 1 cut(s) 750
EcoRII CCWGG 1 cut(s) 285
EcoT14I CCWWGG 4 cut(s) 37, 180, 501, 620
EcoT38I GRGCYC 1 cut(s) 951
ErhI CCWWGG 4 cut(s) 37, 180, 501, 620
FaiI YATR 2 cut(s) 552, 831
FaqI GGGAC 3 cut(s) 638, 703, 818
FbaI TGATCA 1 cut(s) 376
FblI GTMKAC 2 cut(s) 336, 456
Fnu4HI GCNGC 4 cut(s) 396, 845, 848, 878
FokI GGATG 5 cut(s) 59, 97, 118, 725, 845
FriOI GRGCYC 1 cut(s) 951
FseI GGCCGGCC 1 cut(s) 189
Fsp4HI GCNGC 4 cut(s) 396, 845, 848, 878
FspBI CTAG 3 cut(s) 38, 174, 621
GlaI GCGC 2 cut(s) 178, 366
GluI GCNGC 4 cut(s) 396, 845, 848, 878
HaeII RGCGCY 1 cut(s) 180
HaeIII GGCC 5 cut(s) 185, 189, 506, 751, 903
HapII CCGG 6 cut(s) 103, 144, 186, 233, 603, 836
HgaI GACGC 1 cut(s) 262
HhaI GCGC 2 cut(s) 179, 367
Hin1I GRCGYC 2 cut(s) 273, 453
Hin6I GCGC 2 cut(s) 177, 365
HinP1I GCGC 2 cut(s) 177, 365
HincII GTYRAC 3 cut(s) 277, 337, 457
HindII GTYRAC 3 cut(s) 277, 337, 457
HinfI GANTC 4 cut(s) 84, 511, 538, 825
HpaII CCGG 6 cut(s) 103, 144, 186, 233, 603, 836
HphI GGTGA 3 cut(s) 302, 328, 355
Hpy166II GTNNAC 5 cut(s) 277, 337, 457, 466, 696
Hpy188I TCNGA 4 cut(s) 83, 212, 439, 1031
Hpy188III TCNNGA 6 cut(s) 103, 253, 305, 349, 820, 853
Hpy8I GTNNAC 5 cut(s) 277, 337, 457, 466, 696
Hpy99I CGWCG 4 cut(s) 341, 355, 458, 1007
HpyAV CCTTC 3 cut(s) 67, 313, 913
HpyCH4III ACNGT 2 cut(s) 355, 1003
HpyCH4IV ACGT 4 cut(s) 201, 339, 453, 692
HpyF10VI GCNNNNNNNGC 3 cut(s) 371, 488, 527
HpyF3I CTNAG 3 cut(s) 10, 531, 907
HpySE526I ACGT 4 cut(s) 201, 339, 453, 692
Hsp92I GRCGYC 2 cut(s) 273, 453
HspAI GCGC 2 cut(s) 177, 365
Kpn2I TCCGGA 1 cut(s) 102
KroI GCCGGC 1 cut(s) 185
KroNI GCCGGC 1 cut(s) 187
Ksp22I TGATCA 1 cut(s) 376
Kzo9I GATC 6 cut(s) 292, 324, 345, 376, 387, 942
LmnI GCTCC 2 cut(s) 605, 841
Lsp1109I GCAGC 3 cut(s) 382, 834, 856
LweI GCATC 1 cut(s) 119
MaeI CTAG 3 cut(s) 38, 174, 621
MaeII ACGT 4 cut(s) 201, 339, 453, 692
MaeIII GTNAC 1 cut(s) 575
MalI GATC 6 cut(s) 294, 326, 347, 378, 389, 944
MbiI CCGCTC 1 cut(s) 880
MboI GATC 6 cut(s) 292, 324, 345, 376, 387, 942
MboII GAAGA 5 cut(s) 121, 603, 689, 811, 814
MfeI CAATTG 1 cut(s) 897
MhlI GDGCHC 2 cut(s) 363, 951
MlsI TGGCCA 1 cut(s) 903
MluCI AATT 3 cut(s) 663, 699, 897
MluNI TGGCCA 1 cut(s) 903
MmeI TCCRAC 2 cut(s) 252, 585
Mox20I TGGCCA 1 cut(s) 903
MroI TCCGGA 1 cut(s) 102
MroNI GCCGGC 1 cut(s) 185
MscI TGGCCA 1 cut(s) 903
MseI TTAA 2 cut(s) 402, 420
MslI CAYNNNNRTG 1 cut(s) 551
Msp20I TGGCCA 1 cut(s) 903
MspA1I CMGCKG 1 cut(s) 847
MspI CCGG 6 cut(s) 103, 144, 186, 233, 603, 836
MspR9I CCNGG 4 cut(s) 233, 287, 603, 836
MunI CAATTG 1 cut(s) 897
MvaI CCWGG 1 cut(s) 287
MvnI CGCG 1 cut(s) 365
MwoI GCNNNNNNNGC 3 cut(s) 371, 488, 527
NaeI GCCGGC 1 cut(s) 187
NciI CCSGG 3 cut(s) 233, 603, 836
NdeII GATC 6 cut(s) 292, 324, 345, 376, 387, 942
NgoMIV GCCGGC 1 cut(s) 185
NheI GCTAGC 1 cut(s) 173
NlaIV GGNNCC 3 cut(s) 43, 142, 752
OliI CACNNNNGTG 1 cut(s) 551
PaeR7I CTCGAG 1 cut(s) 818
PdiI GCCGGC 1 cut(s) 187
PfeI GAWTC 4 cut(s) 84, 511, 538, 825
PflFI GACNNNGTC 1 cut(s) 629
PfoI TCCNGGA 1 cut(s) 834
PkrI GCNGC 4 cut(s) 397, 846, 849, 879
Psp6I CCWGG 1 cut(s) 285
PspGI CCWGG 1 cut(s) 285
PspN4I GGNNCC 3 cut(s) 43, 142, 752
PspPI GGNCC 2 cut(s) 208, 750
PsyI GACNNNGTC 1 cut(s) 629
PvuII CAGCTG 1 cut(s) 847
RigI GGCCGGCC 1 cut(s) 189
RsaI GTAC 3 cut(s) 299, 695, 1013
RsaNI GTAC 3 cut(s) 298, 694, 1012
RseI CAYNNNNRTG 1 cut(s) 551
SalI GTCGAC 2 cut(s) 335, 455
SaqAI TTAA 2 cut(s) 402, 420
SatI GCNGC 4 cut(s) 396, 845, 848, 878
Sau3AI GATC 6 cut(s) 292, 324, 345, 376, 387, 942
Sau96I GGNCC 2 cut(s) 208, 750
ScrFI CCNGG 4 cut(s) 233, 287, 603, 836
SduI GDGCHC 2 cut(s) 363, 951
SfaNI GCATC 1 cut(s) 119
Sfr274I CTCGAG 1 cut(s) 818
SinI GGWCC 1 cut(s) 208
SlaI CTCGAG 1 cut(s) 818
SmiMI CAYNNNNRTG 1 cut(s) 551
SmlI CTYRAG 2 cut(s) 818, 851
SmoI CTYRAG 2 cut(s) 818, 851
Sse9I AATT 3 cut(s) 663, 699, 897
SsiI CCGC 1 cut(s) 878
SspMI CTAG 3 cut(s) 38, 174, 621
StyD4I CCNGG 4 cut(s) 231, 285, 601, 834
StyI CCWWGG 4 cut(s) 37, 180, 501, 620
TaaI ACNGT 2 cut(s) 355, 1003
TaiI ACGT 4 cut(s) 204, 342, 456, 695
TaqI TCGA 8 cut(s) 168, 252, 336, 350, 456, 819, 945, 1005
TaqII GACCGA 1 cut(s) 474
TasI AATT 3 cut(s) 663, 699, 897
TatI WGTACW 1 cut(s) 297
TauI GCSGC 1 cut(s) 880
TfiI GAWTC 4 cut(s) 84, 511, 538, 825
Tru1I TTAA 2 cut(s) 402, 420
Tru9I TTAA 2 cut(s) 402, 420
TscAI CASTG 1 cut(s) 714
TseI GCWGC 3 cut(s) 395, 844, 847
TspDTI ATGAA 2 cut(s) 121, 151
TspRI CASTG 1 cut(s) 714
Tth111I GACNNNGTC 1 cut(s) 629
VpaK11BI GGWCC 1 cut(s) 208
XcmI CCANNNNNNNNNTGG 1 cut(s) 202
XhoI CTCGAG 1 cut(s) 818
XmaJI CCTAGG 2 cut(s) 37, 620
XmiI GTMKAC 2 cut(s) 336, 456
XspI CTAG 3 cut(s) 38, 174, 621
ZraI GACGTC 1 cut(s) 454
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.