Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0005597

Physical Location & Seq

Genomic Coordinates Reverse (-)

49550855 .. 49554400

Gene Structure 3546 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014224

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGGTGGTTATGGCGTCTAGAGGTGGATTAGCTGAGGGTAAGGCTGGCTTTCGGCCTTTGTCTGGGGGCAACGACGTCTCCTGTGGTGGTGAAACCAAATCCAAGATTCTCATTGTCGGAAGCACCGGCTTCATTGGAAAACACCTCGTCGAAGCCAGCGCGAAAGCCGGTCACCCAACCTTTGCTCTGGTTCGAGAACCCACTCTCTCTAACCCAGCCAAGTCCAAGATCATCCAAAGTTTCAAGGCTTTGGGCGTCAACTTCGTCTTGGGTGATCTCTATGACCACGATAGCCTTGTGAAGGCGATAAAACAAGTCGATGTGGTGATTTCAACAGTGGACCACTCCCAGTTAGCAGATCAACGCAAGATTATAACTGCAATTAAAGAAGCTGGCAATGTCAAGAGATTTTTCCCTTCCGAGTTCGGCAACGATGTCGATCGAGCCCATGCTGTTGAGCCAGCGAAGACGACGTATGCTGTGAAAGCTGACTTTCGCAGAGAAGTTGAGGCATCGGGGATTCCGTACACCTACATCGTTGGCAATTTCTTTTCTGGCTACTTCTTGCCCACTTTGAATCAGCCTGGAGCCACTGCCCCTCCTAGGGATAAAATCGTGGTTTTAGGGGATGGAAACACCAAAGCTATATTTAACAAGGAACAGGACGTTAGTACCTATACTATTAAGGCTGTGGATGATCCGAGAACCTTAAACAAGATCCTCTACATCATGCCCCCGGGCAACACCGTCTCCTTCAACGAAATTGTATCTCTCTGGGAGAAGAAGATTGGCAAGACCCTTGAGAAGATACATGTTCCGGAAGAACAGCTCCTCAAGAAGATTCAAGAGGCTGTGGAACCAATCAAATCGCTACTGTGTTATGGTTACTCAGTCTTCGTGAAGGGAGACCATACTAACTTTGAGGTCGAGCCCACATTCGGAGTAGAAGCTACTGAACTTTACCCTGATGTCAAATACACTTCAGTGGACGAGTACCTCAACCAGTTTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009806 GO:0009807 GO:0009987 GO:0010035 GO:0010038 GO:0016491 GO:0016651 GO:0019438 GO:0019748 GO:0042221 GO:0044237 GO:0044249 GO:0044550 GO:0046686 GO:0050664 GO:0050896 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NmrA

Protein Analysis

338

Amino Acids

36.91

Weight (kDa)

6.67

Isoelectric Point (pI)

21.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NmrA	PF05368	32 - 333	2.1e-89	NmrA-like family
Epimerase	PF01370	36 - 113	2.2e-10	NAD dependent epimerase/dehydratase family
GDP_Man_Dehyd	PF16363	37 - 108	1.1e-06	GDP-mannose 4,6 dehydratase
NAD_binding_10	PF13460	40 - 179	3.7e-15	NAD(P)H-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005597)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39230
fragaria_vesca	FvH4_2g09110 FvH4_2g09120
malus_domestica	MD10G1073200.v1.1 MD10G1073500.v1.1
prunus_persica	Prupe.8G094500_v2.0.a1
pyrus_communis	pycom10g05770 pycom10g05780
rosa_chinensis	RchiOBHm_Chr6g0265001 RchiOBHm_Chr6g0265011
rosa_laevigata	RLG00000014216 RLG00000014221 RLG00000014224
rosa_multiflora	Rmu_sc0000546.1_g000080 Rmu_sc0002934.1_g000023
rosa_roxburghii	Rroxscaffold_175G00432080 Rroxscaffold_175G00432090 Rroxscaffold_7G00203100 Rroxscaffold_7G00203110
rosa_rugosa	Rorug06G0013800 Rorug06G0013900
rosa_samantha	Rh6AG136100 Rh6BG132900 Rh6BG133100 Rh6DG118700 Rh6DG118900
rosa_wichuraiana	Rw6G011720 Rw6G011730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	374
AatII	GACGTC	1 cut(s)	78
AccII	CGCG	1 cut(s)	161
AccIII	TCCGGA	1 cut(s)	817
AclWI	GGATC	2 cut(s)	692, 712
AcuI	CTGAAG	1 cut(s)	966
AcyI	GRCGYC	3 cut(s)	14, 75, 255
AfaI	GTAC	3 cut(s)	527, 673, 995
AfiI	CCNNNNNNNGG	5 cut(s)	62, 301, 603, 604, 938
AflIII	ACRYGT	1 cut(s)	811
AgsI	TTSAA	5 cut(s)	244, 333, 577, 757, 845
AjnI	CCWGG	1 cut(s)	583
AleI	CACNNNNGTG	1 cut(s)	983
AluBI	AGCT	6 cut(s)	32, 392, 488, 644, 829, 950
AluI	AGCT	6 cut(s)	32, 392, 488, 644, 829, 950
Alw26I	GTCTC	3 cut(s)	82, 754, 900
AlwI	GGATC	2 cut(s)	692, 712
Ama87I	CYCGRG	1 cut(s)	736
Aor13HI	TCCGGA	1 cut(s)	817
AoxI	GGCC	1 cut(s)	53
AspA2I	CCTAGG	1 cut(s)	602
AspLEI	GCGC	1 cut(s)	161
AspS9I	GGNCC	1 cut(s)	340
AsuC2I	CCSGG	2 cut(s)	737, 738
AsuHPI	GGTGA	4 cut(s)	101, 164, 284, 337
AvaI	CYCGRG	1 cut(s)	736
AvaII	GGWCC	1 cut(s)	340
AvrII	CCTAGG	1 cut(s)	602
BaeI	ACNNNNGTAYC	2 cut(s)	655, 688
BanII	GRGCYC	2 cut(s)	448, 933
BbsI	GAAGAC	2 cut(s)	473, 886
BbvCI	CCTCAGC	1 cut(s)	33
BccI	CCATC	1 cut(s)	623
BcgI	CGANNNNNNTGC	2 cut(s)	418, 452
BciT130I	CCWGG	1 cut(s)	585
BcnI	CCSGG	2 cut(s)	737, 738
BcoDI	GTCTC	3 cut(s)	82, 754, 900
BfaI	CTAG	2 cut(s)	18, 603
BlnI	CCTAGG	1 cut(s)	602
Bme1390I	CCNGG	3 cut(s)	585, 737, 738
Bme18I	GGWCC	1 cut(s)	340
BmeT110I	CYCGRG	1 cut(s)	736
BmgT120I	GGNCC	1 cut(s)	340
BmiI	GGNNCC	2 cut(s)	589, 858
BmrFI	CCNGG	3 cut(s)	585, 737, 738
BmrI	ACTGGG	1 cut(s)	343
BmsI	GCATC	1 cut(s)	521
BmuI	ACTGGG	1 cut(s)	343
BpiI	GAAGAC	2 cut(s)	473, 886
BpmI	CTGGAG	1 cut(s)	606
Bpu10I	CCTNAGC	1 cut(s)	33
BpuEI	CTTGAG	2 cut(s)	818, 821
BpuMI	CCSGG	2 cut(s)	737, 738
BsaBI	GATNNNNATC	1 cut(s)	438
BsaHI	GRCGYC	3 cut(s)	14, 75, 255
BsaI	GGTCTC	1 cut(s)	900
BsaJI	CCNNGG	3 cut(s)	602, 735, 736
BsaWI	WCCGGW	1 cut(s)	817
BsaXI	ACNNNNNCTCC	6 cut(s)	62, 92, 583, 613, 734, 764
Bsc4I	CCNNNNNNNGG	5 cut(s)	62, 301, 603, 604, 938
Bse118I	RCCGGY	2 cut(s)	125, 167
Bse1I	ACTGG	2 cut(s)	349, 1003
Bse3DI	GCAATG	1 cut(s)	403
Bse8I	GATNNNNATC	1 cut(s)	438
BseAI	TCCGGA	1 cut(s)	817
BseBI	CCWGG	1 cut(s)	585
BseDI	CCNNGG	3 cut(s)	602, 735, 736
BseGI	GGATG	3 cut(s)	231, 634, 700
BseJI	GATNNNNATC	1 cut(s)	438
BseLI	CCNNNNNNNGG	5 cut(s)	62, 301, 603, 604, 938
BseMI	GCAATG	1 cut(s)	403
BseMII	CTCAG	2 cut(s)	24, 903
BseNI	ACTGG	2 cut(s)	349, 1003
BseRI	GAGGAG	1 cut(s)	821
BseYI	CCCAGC	1 cut(s)	214
Bsh1236I	CGCG	1 cut(s)	161
Bsh1285I	CGRYCG	1 cut(s)	442
BshFI	GGCC	1 cut(s)	55
BsiEI	CGRYCG	1 cut(s)	442
BsiHKCI	CYCGRG	1 cut(s)	736
BsiSI	CCGG	4 cut(s)	126, 168, 737, 818
BslI	CCNNNNNNNGG	5 cut(s)	62, 301, 603, 604, 938
BsmAI	GTCTC	3 cut(s)	82, 754, 900
BsmBI	CGTCTC	2 cut(s)	82, 754
BsnI	GGCC	1 cut(s)	55
Bso31I	GGTCTC	1 cut(s)	900
BsoBI	CYCGRG	1 cut(s)	736
Bsp1286I	GDGCHC	2 cut(s)	448, 933
Bsp13I	TCCGGA	1 cut(s)	817
Bsp143I	GATC	6 cut(s)	228, 274, 358, 439, 697, 717
BspANI	GGCC	1 cut(s)	55
BspCNI	CTCAG	2 cut(s)	25, 902
BspEI	TCCGGA	1 cut(s)	817
BspFNI	CGCG	1 cut(s)	161
BspLI	GGNNCC	2 cut(s)	589, 858
BspPI	GGATC	2 cut(s)	692, 712
BspTNI	GGTCTC	1 cut(s)	900
BsrDI	GCAATG	1 cut(s)	403
BsrFI	RCCGGY	2 cut(s)	125, 167
BsrI	ACTGG	2 cut(s)	349, 1003
BssAI	RCCGGY	2 cut(s)	125, 167
BssECI	CCNNGG	3 cut(s)	602, 735, 736
BssMI	GATC	6 cut(s)	228, 274, 358, 439, 697, 717
BssNI	GRCGYC	3 cut(s)	14, 75, 255
BssT1I	CCWWGG	1 cut(s)	602
Bst2UI	CCWGG	1 cut(s)	585
Bst4CI	ACNGT	3 cut(s)	337, 748, 876
BstACI	GRCGYC	3 cut(s)	14, 75, 255
BstC8I	GCNNGC	4 cut(s)	46, 157, 394, 462
BstDEI	CTNAG	2 cut(s)	33, 889
BstEII	GGTNACC	1 cut(s)	170
BstENI	CCTNNNNNAGG	1 cut(s)	299
BstF5I	GGATG	3 cut(s)	231, 634, 700
BstFNI	CGCG	1 cut(s)	161
BstHHI	GCGC	1 cut(s)	161
BstKTI	GATC	6 cut(s)	231, 277, 361, 442, 700, 720
BstMAI	GTCTC	3 cut(s)	82, 754, 900
BstMBI	GATC	6 cut(s)	228, 274, 358, 439, 697, 717
BstMCI	CGRYCG	1 cut(s)	442
BstMWI	GCNNNNNNNGC	1 cut(s)	485
BstNI	CCWGG	1 cut(s)	585
BstNSI	RCATGY	1 cut(s)	815
BstPI	GGTNACC	1 cut(s)	170
BstSCI	CCNGG	3 cut(s)	583, 735, 736
BstUI	CGCG	1 cut(s)	161
BstV2I	GAAGAC	2 cut(s)	473, 886
BstX2I	RGATCY	1 cut(s)	717
BstYI	RGATCY	1 cut(s)	717
BsuRI	GGCC	1 cut(s)	55
BtsCI	GGATG	3 cut(s)	231, 634, 700
BtsI	GCAGTG	1 cut(s)	591
BtsIMutI	CAGTG	3 cut(s)	342, 591, 990
Cac8I	GCNNGC	4 cut(s)	46, 157, 394, 462
CfoI	GCGC	1 cut(s)	161
Cfr10I	RCCGGY	2 cut(s)	125, 167
Cfr13I	GGNCC	1 cut(s)	340
Cfr9I	CCCGGG	1 cut(s)	736
CseI	GACGC	2 cut(s)	3, 244
Csp6I	GTAC	3 cut(s)	526, 672, 994
CviAII	CATG	3 cut(s)	449, 730, 812
CviQI	GTAC	3 cut(s)	526, 672, 994
DdeI	CTNAG	2 cut(s)	33, 889
DpnI	GATC	6 cut(s)	230, 276, 360, 441, 699, 719
DpnII	GATC	6 cut(s)	228, 274, 358, 439, 697, 717
Eco130I	CCWWGG	1 cut(s)	602
Eco24I	GRGCYC	2 cut(s)	448, 933
Eco31I	GGTCTC	1 cut(s)	900
Eco47I	GGWCC	1 cut(s)	340
Eco57I	CTGAAG	1 cut(s)	966
Eco88I	CYCGRG	1 cut(s)	736
Eco91I	GGTNACC	1 cut(s)	170
EcoNI	CCTNNNNNAGG	1 cut(s)	299
EcoO65I	GGTNACC	1 cut(s)	170
EcoRII	CCWGG	1 cut(s)	583
EcoT14I	CCWWGG	1 cut(s)	602
EcoT38I	GRGCYC	2 cut(s)	448, 933
ErhI	CCWWGG	1 cut(s)	602
Esp3I	CGTCTC	2 cut(s)	82, 754
FaeI	CATG	3 cut(s)	452, 733, 815
FalI	AAGNNNNNCTT	2 cut(s)	32, 64
FatI	CATG	3 cut(s)	448, 729, 811
FokI	GGATG	3 cut(s)	218, 641, 707
FriOI	GRGCYC	2 cut(s)	448, 933
FspBI	CTAG	2 cut(s)	18, 603
GlaI	GCGC	1 cut(s)	160
GsaI	CCCAGC	1 cut(s)	218
GsuI	CTGGAG	1 cut(s)	606
HaeIII	GGCC	1 cut(s)	55
HapII	CCGG	4 cut(s)	126, 168, 737, 818
HgaI	GACGC	2 cut(s)	3, 244
HhaI	GCGC	1 cut(s)	161
Hin1I	GRCGYC	3 cut(s)	14, 75, 255
Hin1II	CATG	3 cut(s)	452, 733, 815
Hin6I	GCGC	1 cut(s)	159
HinP1I	GCGC	1 cut(s)	159
HincII	GTYRAC	1 cut(s)	259
HindII	GTYRAC	1 cut(s)	259
HinfI	GANTC	4 cut(s)	106, 520, 577, 841
HpaII	CCGG	4 cut(s)	126, 168, 737, 818
HphI	GGTGA	4 cut(s)	101, 164, 284, 337
Hpy166II	GTNNAC	4 cut(s)	259, 340, 528, 988
Hpy188I	TCNGA	4 cut(s)	119, 421, 702, 941
Hpy188III	TCNNGA	7 cut(s)	18, 194, 403, 818, 835, 845, 898
Hpy8I	GTNNAC	4 cut(s)	259, 340, 528, 988
Hpy99I	CGWCG	3 cut(s)	77, 152, 475
HpyAV	CCTTC	4 cut(s)	295, 426, 763, 895
HpyCH4III	ACNGT	3 cut(s)	337, 748, 876
HpyCH4IV	ACGT	3 cut(s)	75, 473, 666
HpyCH4V	TGCA	1 cut(s)	380
HpyF10VI	GCNNNNNNNGC	1 cut(s)	485
HpyF3I	CTNAG	2 cut(s)	33, 889
HpySE526I	ACGT	3 cut(s)	75, 473, 666
Hsp92I	GRCGYC	3 cut(s)	14, 75, 255
Hsp92II	CATG	3 cut(s)	452, 733, 815
HspAI	GCGC	1 cut(s)	159
Kpn2I	TCCGGA	1 cut(s)	817
Kzo9I	GATC	6 cut(s)	228, 274, 358, 439, 697, 717
LmnI	GCTCC	2 cut(s)	587, 834
LweI	GCATC	1 cut(s)	521
MaeI	CTAG	2 cut(s)	18, 603
MaeII	ACGT	3 cut(s)	75, 473, 666
MaeIII	GTNAC	2 cut(s)	170, 884
MalI	GATC	6 cut(s)	230, 276, 360, 441, 699, 719
MboI	GATC	6 cut(s)	228, 274, 358, 439, 697, 717
MboII	GAAGA	7 cut(s)	478, 793, 796, 817, 833, 850, 886
MflI	RGATCY	1 cut(s)	717
MhlI	GDGCHC	2 cut(s)	448, 933
MluCI	AATT	3 cut(s)	381, 544, 762
MmeI	TCCRAC	1 cut(s)	97
MroI	TCCGGA	1 cut(s)	817
MseI	TTAA	4 cut(s)	384, 651, 684, 710
MslI	CAYNNNNRTG	1 cut(s)	983
MspI	CCGG	4 cut(s)	126, 168, 737, 818
MspR9I	CCNGG	3 cut(s)	585, 737, 738
MvaI	CCWGG	1 cut(s)	585
MvnI	CGCG	1 cut(s)	161
MwoI	GCNNNNNNNGC	1 cut(s)	485
NciI	CCSGG	2 cut(s)	737, 738
NdeII	GATC	6 cut(s)	228, 274, 358, 439, 697, 717
NlaIII	CATG	3 cut(s)	452, 733, 815
NlaIV	GGNNCC	2 cut(s)	589, 858
NmuCI	GTSAC	1 cut(s)	170
NspI	RCATGY	1 cut(s)	815
OliI	CACNNNNGTG	1 cut(s)	983
PciI	ACATGT	1 cut(s)	811
PcsI	WCGNNNNNNNCGW	1 cut(s)	521
PfeI	GAWTC	4 cut(s)	106, 520, 577, 841
Ple19I	CGATCG	1 cut(s)	442
PscI	ACATGT	1 cut(s)	811
PsiI	TTATAA	1 cut(s)	374
Psp6I	CCWGG	1 cut(s)	583
PspEI	GGTNACC	1 cut(s)	170
PspFI	CCCAGC	1 cut(s)	214
PspGI	CCWGG	1 cut(s)	583
PspN4I	GGNNCC	2 cut(s)	589, 858
PspPI	GGNCC	1 cut(s)	340
PsuI	RGATCY	1 cut(s)	717
PvuI	CGATCG	1 cut(s)	442
RsaI	GTAC	3 cut(s)	527, 673, 995
RsaNI	GTAC	3 cut(s)	526, 672, 994
RseI	CAYNNNNRTG	1 cut(s)	983
SaqAI	TTAA	4 cut(s)	384, 651, 684, 710
Sau3AI	GATC	6 cut(s)	228, 274, 358, 439, 697, 717
Sau96I	GGNCC	1 cut(s)	340
ScrFI	CCNGG	3 cut(s)	585, 737, 738
SduI	GDGCHC	2 cut(s)	448, 933
SfaNI	GCATC	1 cut(s)	521
SinI	GGWCC	1 cut(s)	340
SmaI	CCCGGG	1 cut(s)	738
SmiMI	CAYNNNNRTG	1 cut(s)	983
SmlI	CTYRAG	2 cut(s)	800, 833
SmoI	CTYRAG	2 cut(s)	800, 833
Sse9I	AATT	3 cut(s)	381, 544, 762
SspMI	CTAG	2 cut(s)	18, 603
StyD4I	CCNGG	3 cut(s)	583, 735, 736
StyI	CCWWGG	1 cut(s)	602
TaaI	ACNGT	3 cut(s)	337, 748, 876
TaiI	ACGT	3 cut(s)	78, 476, 669
TaqI	TCGA	6 cut(s)	150, 193, 318, 438, 442, 927
TasI	AATT	3 cut(s)	381, 544, 762
TfiI	GAWTC	4 cut(s)	106, 520, 577, 841
Tru1I	TTAA	4 cut(s)	384, 651, 684, 710
Tru9I	TTAA	4 cut(s)	384, 651, 684, 710
TscAI	CASTG	3 cut(s)	342, 598, 990
TseFI	GTSAC	1 cut(s)	170
Tsp45I	GTSAC	1 cut(s)	170
TspDTI	ATGAA	1 cut(s)	121
TspGWI	ACGGA	1 cut(s)	513
TspMI	CCCGGG	1 cut(s)	736
TspRI	CASTG	3 cut(s)	342, 598, 990
VpaK11BI	GGWCC	1 cut(s)	340
XagI	CCTNNNNNAGG	1 cut(s)	299
XbaI	TCTAGA	1 cut(s)	17
XceI	RCATGY	1 cut(s)	815
XmaI	CCCGGG	1 cut(s)	736
XmaJI	CCTAGG	1 cut(s)	602
XspI	CTAG	2 cut(s)	18, 603
ZraI	GACGTC	1 cut(s)	76

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.