Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0005597

Physical Location & Seq

Genomic Coordinates Reverse (-)

49481786 .. 49488771

Gene Structure 6986 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014216

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGGCGCAAACTAAGTCCCAGATTCTCTTCATCGGAGGCACTGGCTACATTGGTAAGTTCATAGTCGAGGCCAGCGCCAAGGCCGGCCACCCCACCTTCGTTCTAGTCCGGGAGCCCACTCTCTCCAACCCGGCCAAATCCGAAGTCATCGACAGCTTCAAGGCCTCTGGCGTCAATTTCGTCCTGGCGATTAGGCAAGTCGATGTGGTGATTTCGACGGTGGGTCACGCGCAGTTGGCTGATCAAGGCAAGATCATCGCCGCCATTAAAGAAGCCGGCAACGTCAAGAGGTTTTTCCCTTCCGAGTTTGGAAACGACGTGGATCGAGTCCACGCTGTGGAGCCAGCAAAGACAGCGTTCGCTACGAAAGCCAAGGTCCGCAGAGATGTTGAGGCGGCCGGGATTCCATACACTTACGTGTCATCAAACTTCTTTGCTGGTTACTTCTTGCCCAATCTGAACCAGCCCGGAGCTACTGCTCCTCCCAGGGACAAAGTCGTCATTTTGGGTGATGGCAACCCCAAAGCAATCTTTAACAAGGAAGAGGATATTGGTACCTATACCATTAAGGCTGTGGATGACCCAAGAACATTGAACAAGATCCTCTACATCCGGCCACCTGCCAACACCTTCTCCTTCAACGAACTTGTGGCTCTTTGGGAGAAGAAGATTGGAAAAACCCTCGAGAAGGTCTATGTCCCAGAGGAGCAACTACTCAAAAACATTCAAGAGGCTGCGGTTCCAATCAATGTGATACTGGCAATCGGTCACTCAGTTTTTGTGAAAGGAGATCACACTAACTTTGAGATCGATCCCTCATTTGGAGTGGAAGCTACTGCTCTTTACCCTGATGTCAAATACACTACTGTGGATGAGTACCTCTCCCAGTTCGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009806 GO:0009807 GO:0009987 GO:0010035 GO:0010038 GO:0016491 GO:0016651 GO:0019438 GO:0019748 GO:0042221 GO:0044237 GO:0044249 GO:0044550 GO:0046686 GO:0050664 GO:0050896 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NmrA

Protein Analysis

299

Amino Acids

32.56

Weight (kDa)

6.54

Isoelectric Point (pI)

25.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NmrA	PF05368	4 - 294	3.1e-88	NmrA-like family
NAD_binding_10	PF13460	12 - 142	1.8e-08	NAD(P)H-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005597)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39230
fragaria_vesca	FvH4_2g09110 FvH4_2g09120
malus_domestica	MD10G1073200.v1.1 MD10G1073500.v1.1
prunus_persica	Prupe.8G094500_v2.0.a1
pyrus_communis	pycom10g05770 pycom10g05780
rosa_chinensis	RchiOBHm_Chr6g0265001 RchiOBHm_Chr6g0265011
rosa_laevigata	RLG00000014216 RLG00000014221 RLG00000014224
rosa_multiflora	Rmu_sc0000546.1_g000080 Rmu_sc0002934.1_g000023
rosa_roxburghii	Rroxscaffold_175G00432080 Rroxscaffold_175G00432090 Rroxscaffold_7G00203100 Rroxscaffold_7G00203110
rosa_rugosa	Rorug06G0013800 Rorug06G0013900
rosa_samantha	Rh6AG136100 Rh6BG132900 Rh6BG133100 Rh6DG118700 Rh6DG118900
rosa_wichuraiana	Rw6G011720 Rw6G011730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	628
AasI	GACNNNNNNGTC	1 cut(s)	497
Acc36I	ACCTGC	1 cut(s)	628
Acc65I	GGTACC	1 cut(s)	554
AccB1I	GGYRCC	1 cut(s)	554
AccB7I	CCANNNNNTGG	1 cut(s)	337
AccII	CGCG	1 cut(s)	230
AciI	CCGC	4 cut(s)	261, 379, 395, 737
AclWI	GGATC	3 cut(s)	330, 595, 806
AcoI	YGGCCR	4 cut(s)	85, 132, 396, 614
AcyI	GRCGYC	1 cut(s)	171
AdeI	CACNNNGTG	1 cut(s)	337
AfaI	GTAC	2 cut(s)	556, 878
AfiI	CCNNNNNNNGG	3 cut(s)	337, 688, 821
AflIII	ACRYGT	1 cut(s)	417
AgsI	TTSAA	4 cut(s)	160, 595, 640, 728
AhdI	GACNNNNNGTC	1 cut(s)	222
AjiI	CACGTC	1 cut(s)	319
AjnI	CCWGG	2 cut(s)	183, 485
AjuI	GAANNNNNNNTTGG	2 cut(s)	534, 566
AleI	CACNNNNGTG	2 cut(s)	416, 866
AluBI	AGCT	3 cut(s)	156, 473, 833
AluI	AGCT	3 cut(s)	156, 473, 833
AlwI	GGATC	3 cut(s)	330, 595, 806
Ama87I	CYCGRG	1 cut(s)	683
AoxI	GGCC	7 cut(s)	69, 81, 85, 132, 162, 396, 614
ApeKI	GCWGC	1 cut(s)	734
ArsI	GACNNNNNNTTYG	2 cut(s)	129, 161
Asp718I	GGTACC	1 cut(s)	554
AspLEI	GCGC	3 cut(s)	7, 77, 232
AspS9I	GGNCC	1 cut(s)	376
AsuC2I	CCSGG	4 cut(s)	110, 131, 400, 468
AsuHPI	GGTGA	2 cut(s)	220, 521
AvaI	CYCGRG	1 cut(s)	683
AvaII	GGWCC	1 cut(s)	376
BanI	GGYRCC	1 cut(s)	554
BanII	GRGCYC	1 cut(s)	117
BbvI	GCAGC	1 cut(s)	721
BccI	CCATC	1 cut(s)	506
BcgI	CGANNNNNNTGC	2 cut(s)	238, 272
BciT130I	CCWGG	2 cut(s)	185, 487
BclI	TGATCA	1 cut(s)	241
BcnI	CCSGG	4 cut(s)	110, 131, 400, 468
BfaI	CTAG	1 cut(s)	104
BfoI	RGCGCY	1 cut(s)	78
BfuAI	ACCTGC	1 cut(s)	628
BisI	GCNGC	3 cut(s)	261, 396, 735
BlsI	GCNGC	3 cut(s)	262, 397, 736
Bme1390I	CCNGG	6 cut(s)	110, 131, 185, 400, 468, 487
Bme18I	GGWCC	1 cut(s)	376
BmeRI	GACNNNNNGTC	1 cut(s)	222
BmeT110I	CYCGRG	1 cut(s)	683
BmgBI	CACGTC	1 cut(s)	319
BmgT120I	GGNCC	1 cut(s)	376
BmiI	GGNNCC	4 cut(s)	114, 342, 556, 741
BmrFI	CCNGG	6 cut(s)	110, 131, 185, 400, 468, 487
BmrI	ACTGGG	1 cut(s)	880
BmuI	ACTGGG	1 cut(s)	880
BplI	GAGNNNNNCTC	1 cut(s)	866
BpuMI	CCSGG	4 cut(s)	110, 131, 400, 468
Bsa29I	ATCGAT	1 cut(s)	810
BsaAI	YACGTR	1 cut(s)	418
BsaHI	GRCGYC	1 cut(s)	171
BsaJI	CCNNGG	4 cut(s)	78, 372, 485, 486
BsaXI	ACNNNNNCTCC	4 cut(s)	466, 496, 617, 647
Bsc4I	CCNNNNNNNGG	3 cut(s)	337, 688, 821
Bse118I	RCCGGY	2 cut(s)	83, 275
Bse1I	ACTGG	3 cut(s)	46, 762, 886
BseBI	CCWGG	2 cut(s)	185, 487
BseCI	ATCGAT	1 cut(s)	810
BseDI	CCNNGG	4 cut(s)	78, 372, 485, 486
BseGI	GGATG	3 cut(s)	583, 609, 877
BseLI	CCNNNNNNNGG	3 cut(s)	337, 688, 821
BseMII	CTCAG	1 cut(s)	786
BseNI	ACTGG	3 cut(s)	46, 762, 886
BseRI	GAGGAG	2 cut(s)	471, 719
BseX3I	CGGCCG	1 cut(s)	396
BseXI	GCAGC	1 cut(s)	721
Bsh1236I	CGCG	1 cut(s)	230
Bsh1285I	CGRYCG	1 cut(s)	399
BshFI	GGCC	7 cut(s)	71, 83, 87, 134, 164, 398, 616
BshNI	GGYRCC	1 cut(s)	554
BshVI	ATCGAT	1 cut(s)	810
BsiEI	CGRYCG	1 cut(s)	399
BsiHKCI	CYCGRG	1 cut(s)	683
BsiSI	CCGG	7 cut(s)	84, 109, 131, 276, 399, 468, 613
BslFI	GGGAC	2 cut(s)	503, 683
BslI	CCNNNNNNNGG	3 cut(s)	337, 688, 821
BsmFI	GGGAC	2 cut(s)	503, 683
BsnI	GGCC	7 cut(s)	71, 83, 87, 134, 164, 398, 616
BsoBI	CYCGRG	1 cut(s)	683
Bsp1286I	GDGCHC	1 cut(s)	117
Bsp143I	GATC	7 cut(s)	241, 252, 322, 600, 790, 807, 811
BspACI	CCGC	4 cut(s)	261, 379, 395, 737
BspANI	GGCC	7 cut(s)	71, 83, 87, 134, 164, 398, 616
BspCNI	CTCAG	1 cut(s)	785
BspDI	ATCGAT	1 cut(s)	810
BspFNI	CGCG	1 cut(s)	230
BspLI	GGNNCC	4 cut(s)	114, 342, 556, 741
BspMI	ACCTGC	1 cut(s)	628
BspPI	GGATC	3 cut(s)	330, 595, 806
BspT107I	GGYRCC	1 cut(s)	554
BsrFI	RCCGGY	2 cut(s)	83, 275
BsrI	ACTGG	3 cut(s)	46, 762, 886
BssAI	RCCGGY	2 cut(s)	83, 275
BssECI	CCNNGG	4 cut(s)	78, 372, 485, 486
BssMI	GATC	7 cut(s)	241, 252, 322, 600, 790, 807, 811
BssNI	GRCGYC	1 cut(s)	171
BssT1I	CCWWGG	2 cut(s)	78, 372
Bst2UI	CCWGG	2 cut(s)	185, 487
Bst4CI	ACNGT	2 cut(s)	220, 868
Bst6I	CTCTTC	2 cut(s)	32, 537
BstACI	GRCGYC	1 cut(s)	171
BstBAI	YACGTR	1 cut(s)	418
BstC8I	GCNNGC	4 cut(s)	73, 85, 277, 345
BstDEI	CTNAG	2 cut(s)	12, 772
BstENI	CCTNNNNNAGG	1 cut(s)	686
BstF5I	GGATG	3 cut(s)	583, 609, 877
BstFNI	CGCG	1 cut(s)	230
BstH2I	RGCGCY	1 cut(s)	78
BstHHI	GCGC	3 cut(s)	7, 77, 232
BstKTI	GATC	7 cut(s)	244, 255, 325, 603, 793, 810, 814
BstMBI	GATC	7 cut(s)	241, 252, 322, 600, 790, 807, 811
BstMCI	CGRYCG	1 cut(s)	399
BstMWI	GCNNNNNNNGC	3 cut(s)	236, 353, 368
BstNI	CCWGG	2 cut(s)	185, 487
BstSCI	CCNGG	6 cut(s)	108, 129, 183, 398, 466, 485
BstUI	CGCG	1 cut(s)	230
BstV1I	GCAGC	1 cut(s)	721
BstX2I	RGATCY	1 cut(s)	600
BstYI	RGATCY	1 cut(s)	600
BstZI	CGGCCG	1 cut(s)	396
Bsu15I	ATCGAT	1 cut(s)	810
BsuRI	GGCC	7 cut(s)	71, 83, 87, 134, 164, 398, 616
BsuTUI	ATCGAT	1 cut(s)	810
BtgZI	GCGATG	1 cut(s)	241
BtrI	CACGTC	1 cut(s)	319
BtsCI	GGATG	3 cut(s)	583, 609, 877
BtsIMutI	CAGTG	1 cut(s)	39
BveI	ACCTGC	1 cut(s)	628
Cac8I	GCNNGC	4 cut(s)	73, 85, 277, 345
CfoI	GCGC	3 cut(s)	7, 77, 232
Cfr10I	RCCGGY	2 cut(s)	83, 275
Cfr13I	GGNCC	1 cut(s)	376
ClaI	ATCGAT	1 cut(s)	810
CseI	GACGC	1 cut(s)	160
Csp6I	GTAC	2 cut(s)	555, 877
CviQI	GTAC	2 cut(s)	555, 877
DdeI	CTNAG	2 cut(s)	12, 772
DpnI	GATC	7 cut(s)	243, 254, 324, 602, 792, 809, 813
DpnII	GATC	7 cut(s)	241, 252, 322, 600, 790, 807, 811
DraIII	CACNNNGTG	1 cut(s)	337
DrdI	GACNNNNNNGTC	1 cut(s)	497
DriI	GACNNNNNGTC	1 cut(s)	222
DseDI	GACNNNNNNGTC	1 cut(s)	497
EaeI	YGGCCR	4 cut(s)	85, 132, 396, 614
EagI	CGGCCG	1 cut(s)	396
Eam1104I	CTCTTC	2 cut(s)	32, 537
Eam1105I	GACNNNNNGTC	1 cut(s)	222
EarI	CTCTTC	2 cut(s)	32, 537
EclXI	CGGCCG	1 cut(s)	396
Eco130I	CCWWGG	2 cut(s)	78, 372
Eco147I	AGGCCT	1 cut(s)	164
Eco24I	GRGCYC	1 cut(s)	117
Eco47I	GGWCC	1 cut(s)	376
Eco52I	CGGCCG	1 cut(s)	396
Eco88I	CYCGRG	1 cut(s)	683
EcoNI	CCTNNNNNAGG	1 cut(s)	686
EcoRII	CCWGG	2 cut(s)	183, 485
EcoT14I	CCWWGG	2 cut(s)	78, 372
EcoT38I	GRGCYC	1 cut(s)	117
ErhI	CCWWGG	2 cut(s)	78, 372
FaiI	YATR	4 cut(s)	62, 409, 561, 696
FaqI	GGGAC	2 cut(s)	503, 683
FbaI	TGATCA	1 cut(s)	241
Fnu4HI	GCNGC	3 cut(s)	261, 396, 735
FokI	GGATG	3 cut(s)	590, 596, 884
FriOI	GRGCYC	1 cut(s)	117
FseI	GGCCGGCC	1 cut(s)	87
Fsp4HI	GCNGC	3 cut(s)	261, 396, 735
FspBI	CTAG	1 cut(s)	104
GlaI	GCGC	3 cut(s)	6, 76, 231
GluI	GCNGC	3 cut(s)	261, 396, 735
HaeII	RGCGCY	1 cut(s)	78
HaeIII	GGCC	7 cut(s)	71, 83, 87, 134, 164, 398, 616
HapII	CCGG	7 cut(s)	84, 109, 131, 276, 399, 468, 613
HgaI	GACGC	1 cut(s)	160
HhaI	GCGC	3 cut(s)	7, 77, 232
Hin1I	GRCGYC	1 cut(s)	171
Hin6I	GCGC	3 cut(s)	5, 75, 230
HinP1I	GCGC	3 cut(s)	5, 75, 230
HinfI	GANTC	3 cut(s)	22, 327, 403
HpaII	CCGG	7 cut(s)	84, 109, 131, 276, 399, 468, 613
HphI	GGTGA	2 cut(s)	220, 521
Hpy166II	GTNNAC	1 cut(s)	331
Hpy188I	TCNGA	5 cut(s)	35, 142, 304, 459, 896
Hpy188III	TCNNGA	3 cut(s)	286, 685, 728
Hpy8I	GTNNAC	1 cut(s)	331
Hpy99I	CGWCG	2 cut(s)	220, 320
HpyAV	CCTTC	5 cut(s)	106, 309, 640, 646, 682
HpyCH4III	ACNGT	2 cut(s)	220, 868
HpyCH4IV	ACGT	3 cut(s)	282, 318, 417
HpyF10VI	GCNNNNNNNGC	3 cut(s)	236, 353, 368
HpyF3I	CTNAG	2 cut(s)	12, 772
HpySE526I	ACGT	3 cut(s)	282, 318, 417
Hsp92I	GRCGYC	1 cut(s)	171
HspAI	GCGC	3 cut(s)	5, 75, 230
KpnI	GGTACC	1 cut(s)	558
KroI	GCCGGC	2 cut(s)	83, 275
KroNI	GCCGGC	2 cut(s)	85, 277
Ksp22I	TGATCA	1 cut(s)	241
Kzo9I	GATC	7 cut(s)	241, 252, 322, 600, 790, 807, 811
LmnI	GCTCC	5 cut(s)	112, 340, 470, 484, 706
Lsp1109I	GCAGC	1 cut(s)	721
MaeI	CTAG	1 cut(s)	104
MaeII	ACGT	3 cut(s)	282, 318, 417
MaeIII	GTNAC	3 cut(s)	224, 440, 767
MalI	GATC	7 cut(s)	243, 254, 324, 602, 792, 809, 813
MboI	GATC	7 cut(s)	241, 252, 322, 600, 790, 807, 811
MboII	GAAGA	4 cut(s)	19, 554, 676, 679
MflI	RGATCY	1 cut(s)	600
MhlI	GDGCHC	1 cut(s)	117
MluCI	AATT	1 cut(s)	175
MlyI	GAGTC	1 cut(s)	336
MmeI	TCCRAC	1 cut(s)	150
MroNI	GCCGGC	2 cut(s)	83, 275
MseI	TTAA	3 cut(s)	267, 534, 567
MslI	CAYNNNNRTG	2 cut(s)	416, 866
MspI	CCGG	7 cut(s)	84, 109, 131, 276, 399, 468, 613
MspR9I	CCNGG	6 cut(s)	110, 131, 185, 400, 468, 487
MvaI	CCWGG	2 cut(s)	185, 487
MvnI	CGCG	1 cut(s)	230
MwoI	GCNNNNNNNGC	3 cut(s)	236, 353, 368
NaeI	GCCGGC	2 cut(s)	85, 277
NciI	CCSGG	4 cut(s)	110, 131, 400, 468
NdeII	GATC	7 cut(s)	241, 252, 322, 600, 790, 807, 811
NgoMIV	GCCGGC	2 cut(s)	83, 275
NlaIV	GGNNCC	4 cut(s)	114, 342, 556, 741
NmuCI	GTSAC	2 cut(s)	224, 767
OliI	CACNNNNGTG	2 cut(s)	416, 866
PaeR7I	CTCGAG	1 cut(s)	683
PaqCI	CACCTGC	1 cut(s)	628
PasI	CCCWGGG	1 cut(s)	486
PceI	AGGCCT	1 cut(s)	164
PdiI	GCCGGC	2 cut(s)	85, 277
PfeI	GAWTC	2 cut(s)	22, 403
PflFI	GACNNNGTC	1 cut(s)	494
PflMI	CCANNNNNTGG	1 cut(s)	337
PfoI	TCCNGGA	1 cut(s)	108
PkrI	GCNGC	3 cut(s)	262, 397, 736
PleI	GAGTC	1 cut(s)	335
PpsI	GAGTC	1 cut(s)	335
Ppu21I	YACGTR	1 cut(s)	418
Psp6I	CCWGG	2 cut(s)	183, 485
PspGI	CCWGG	2 cut(s)	183, 485
PspN4I	GGNNCC	4 cut(s)	114, 342, 556, 741
PspPI	GGNCC	1 cut(s)	376
PsuI	RGATCY	1 cut(s)	600
PsyI	GACNNNGTC	1 cut(s)	494
RigI	GGCCGGCC	1 cut(s)	87
RsaI	GTAC	2 cut(s)	556, 878
RsaNI	GTAC	2 cut(s)	555, 877
RseI	CAYNNNNRTG	2 cut(s)	416, 866
SaqAI	TTAA	3 cut(s)	267, 534, 567
SatI	GCNGC	3 cut(s)	261, 396, 735
Sau3AI	GATC	7 cut(s)	241, 252, 322, 600, 790, 807, 811
Sau96I	GGNCC	1 cut(s)	376
SchI	GAGTC	1 cut(s)	336
ScrFI	CCNGG	6 cut(s)	110, 131, 185, 400, 468, 487
SduI	GDGCHC	1 cut(s)	117
Sfr274I	CTCGAG	1 cut(s)	683
SinI	GGWCC	1 cut(s)	376
SlaI	CTCGAG	1 cut(s)	683
SmiMI	CAYNNNNRTG	2 cut(s)	416, 866
SmlI	CTYRAG	1 cut(s)	683
SmoI	CTYRAG	1 cut(s)	683
Sse9I	AATT	1 cut(s)	175
SseBI	AGGCCT	1 cut(s)	164
SsiI	CCGC	4 cut(s)	261, 379, 395, 737
SspMI	CTAG	1 cut(s)	104
StuI	AGGCCT	1 cut(s)	164
StyD4I	CCNGG	6 cut(s)	108, 129, 183, 398, 466, 485
StyI	CCWWGG	2 cut(s)	78, 372
TaaI	ACNGT	2 cut(s)	220, 868
TaiI	ACGT	3 cut(s)	285, 321, 420
TaqI	TCGA	7 cut(s)	66, 150, 201, 215, 325, 684, 810
TaqII	GACCGA	1 cut(s)	755
TasI	AATT	1 cut(s)	175
TauI	GCSGC	2 cut(s)	263, 398
TfiI	GAWTC	2 cut(s)	22, 403
Tru1I	TTAA	3 cut(s)	267, 534, 567
Tru9I	TTAA	3 cut(s)	267, 534, 567
TscAI	CASTG	1 cut(s)	46
TseFI	GTSAC	2 cut(s)	224, 767
TseI	GCWGC	1 cut(s)	734
Tsp45I	GTSAC	2 cut(s)	224, 767
TspDTI	ATGAA	2 cut(s)	19, 49
TspRI	CASTG	1 cut(s)	46
Tth111I	GACNNNGTC	1 cut(s)	494
Van91I	CCANNNNNTGG	1 cut(s)	337
VpaK11BI	GGWCC	1 cut(s)	376
XagI	CCTNNNNNAGG	1 cut(s)	686
XcmI	CCANNNNNNNNNTGG	1 cut(s)	571
XhoI	CTCGAG	1 cut(s)	683
XspI	CTAG	1 cut(s)	104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.