Rroxscaffold_7G00203100

isoflavone

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Reverse (-)
51601603 .. 51604335
2733 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00203100.1

Sequence Viewer

Length: 1023 bp
ATGGTATTACTATCATCCACTCGGCTAGTTGTCCTTTCATTTGCAACGCTTTCTCTCGCTTTCTTTCTCCGGCGACTCCTGTTCCCGGATCCAATGGCTCAAACCAAATCCAAGATTCTCTTCATCGGAGGCACTGGCTACATTGGCAAGTTCATAGTCGAGGCCAGCGCGAAGGCTGGCCACCCCACCTTCGCTCTCGTCCGGGAGCCCACTCTCTCCAATCCGGCCAAGTCTAAAGTCATCGACAGCTTCAAGGCCTTGGGAGTCAATTTCATCCTGGGTGATCTGTACGACCACGAGAGCCTTGTGAAGGCGATTAAGCAAGTCGATGTGGTGATTTCGACGGTGGGTCACGCGCAGTTGGCTGATCAAGGCAAGATCATCGCCGCCATTAAAGAAGCCGGCAATGTCAAGAGGTTTTTCCCTTCCGAGTTTGGAAACGACGTGGATCGAGTCCATGCTGTGGAGCCAGCAAAGACGGCGTTCGCTACGAAAGCCAAGGTCCGCAGAGATGTTGAGGCGGCCGGGATTCCCTACACTTATGTGTCATCAAACTTCTTTGCTGGTTACTTCTTGCCCAATCTGAACCAGGCCGGAGCTACTGTTCCTCCCAGGGACAAAGTCGTCATTTTGGGTGATGGCAACCCCAAAGCAATCTTTAACAAGGAAGAGGATATTGGTACCTATACCATTAAGGCTGTGGATGACCCAAGAACATTGAACAAGATCCTCTACATCCGGCCACCTGCCAACACCATCTCCTTCAACGAACTTGTGGCTCTTTGGGAGAAGAAGATTGGAAAAACCATCGAGAAGGTCTATGTCCCGGAGGAGCAACTACTCAAAAACATTCAAGAGGCTGCGGTTCCAGTCAATGTGATACTGTCAATCGGTCACTCAGTTTTTGTGAAAGGAGACCACACTAACTTTGAGATCGAGCCCTCATTTGGAGTGGAAGCTACTGCTCTTTACCCTGATGTCAAGTACACTACTGTGGATGAGTACCTCTCCCAGTTCGTCTGA

Protein Analysis

340

Amino Acids

37.29

Weight (kDa)

8.45

Isoelectric Point (pI)

29.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NmrA PF05368 35 - 336 8.1e-100 NmrA-like family
Epimerase PF01370 39 - 119 2.4e-08 NAD dependent epimerase/dehydratase family
NAD_binding_10 PF13460 43 - 184 5.3e-14 NAD(P)H-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 754
AasI GACNNNNNNGTC 1 cut(s) 623
Acc36I ACCTGC 1 cut(s) 754
Acc65I GGTACC 1 cut(s) 680
AccB1I GGYRCC 1 cut(s) 680
AccB7I CCANNNNNTGG 1 cut(s) 463
AccII CGCG 2 cut(s) 170, 356
AciI CCGC 4 cut(s) 387, 505, 521, 863
AclWI GGATC 4 cut(s) 83, 96, 456, 721
AcoI YGGCCR 4 cut(s) 178, 225, 522, 740
AfaI GTAC 4 cut(s) 290, 682, 986, 1004
AfiI CCNNNNNNNGG 4 cut(s) 85, 310, 463, 947
AgsI TTSAA 4 cut(s) 253, 721, 766, 854
AhdI GACNNNNNGTC 1 cut(s) 348
AjiI CACGTC 1 cut(s) 445
AjnI CCWGG 3 cut(s) 276, 588, 611
AjuI GAANNNNNNNTTGG 4 cut(s) 104, 136, 660, 692
AleI CACNNNNGTG 2 cut(s) 542, 992
AloI GAACNNNNNNTCC 2 cut(s) 588, 620
AluBI AGCT 3 cut(s) 249, 599, 959
AluI AGCT 3 cut(s) 249, 599, 959
Alw26I GTCTC 1 cut(s) 909
AlwI GGATC 4 cut(s) 83, 96, 456, 721
AoxI GGCC 7 cut(s) 162, 178, 225, 255, 522, 591, 740
ApeKI GCWGC 1 cut(s) 860
Asp718I GGTACC 1 cut(s) 680
AspLEI GCGC 2 cut(s) 170, 358
AspS9I GGNCC 1 cut(s) 502
AsuC2I CCSGG 4 cut(s) 86, 203, 526, 827
AsuHPI GGTGA 3 cut(s) 293, 346, 647
AvaII GGWCC 1 cut(s) 502
BalI TGGCCA 1 cut(s) 180
BamHI GGATCC 1 cut(s) 88
BanI GGYRCC 1 cut(s) 680
BanII GRGCYC 2 cut(s) 210, 942
BauI CACGAG 1 cut(s) 296
BbvI GCAGC 1 cut(s) 847
BccI CCATC 3 cut(s) 632, 764, 815
BceAI ACGGC 1 cut(s) 495
BcgI CGANNNNNNTGC 2 cut(s) 364, 398
BciT130I CCWGG 3 cut(s) 278, 590, 613
BclI TGATCA 1 cut(s) 367
BcnI CCSGG 4 cut(s) 86, 203, 526, 827
BcoDI GTCTC 1 cut(s) 909
BfaI CTAG 1 cut(s) 26
BfuAI ACCTGC 1 cut(s) 754
BisI GCNGC 3 cut(s) 387, 522, 861
BlsI GCNGC 3 cut(s) 388, 523, 862
Bme1390I CCNGG 7 cut(s) 86, 203, 278, 526, 590, 613, 827
Bme18I GGWCC 1 cut(s) 502
BmeRI GACNNNNNGTC 1 cut(s) 348
BmgBI CACGTC 1 cut(s) 445
BmgT120I GGNCC 1 cut(s) 502
BmiI GGNNCC 5 cut(s) 90, 207, 468, 682, 867
BmrFI CCNGG 7 cut(s) 86, 203, 278, 526, 590, 613, 827
BmrI ACTGGG 1 cut(s) 1006
BmuI ACTGGG 1 cut(s) 1006
BplI GAGNNNNNCTC 1 cut(s) 992
BpuMI CCSGG 4 cut(s) 86, 203, 526, 827
BsaI GGTCTC 1 cut(s) 909
BsaJI CCNNGG 5 cut(s) 258, 277, 498, 611, 612
BsaXI ACNNNNNCTCC 6 cut(s) 588, 592, 618, 622, 743, 773
Bsc4I CCNNNNNNNGG 4 cut(s) 85, 310, 463, 947
Bse118I RCCGGY 1 cut(s) 401
Bse1I ACTGG 3 cut(s) 139, 869, 1012
Bse3DI GCAATG 1 cut(s) 412
BseBI CCWGG 3 cut(s) 278, 590, 613
BseDI CCNNGG 5 cut(s) 258, 277, 498, 611, 612
BseGI GGATG 5 cut(s) 14, 273, 709, 735, 1003
BseLI CCNNNNNNNGG 4 cut(s) 85, 310, 463, 947
BseMI GCAATG 1 cut(s) 412
BseMII CTCAG 1 cut(s) 912
BseNI ACTGG 3 cut(s) 139, 869, 1012
BseRI GAGGAG 1 cut(s) 845
BseX3I CGGCCG 1 cut(s) 522
BseXI GCAGC 1 cut(s) 847
Bsh1236I CGCG 2 cut(s) 170, 356
Bsh1285I CGRYCG 1 cut(s) 525
BshFI GGCC 7 cut(s) 164, 180, 227, 257, 524, 593, 742
BshNI GGYRCC 1 cut(s) 680
BsiEI CGRYCG 1 cut(s) 525
BsiSI CCGG 9 cut(s) 70, 86, 202, 224, 402, 525, 594, 739, 827
BslFI GGGAC 2 cut(s) 629, 809
BslI CCNNNNNNNGG 4 cut(s) 85, 310, 463, 947
BsmAI GTCTC 1 cut(s) 909
BsmFI GGGAC 2 cut(s) 629, 809
BsnI GGCC 7 cut(s) 164, 180, 227, 257, 524, 593, 742
Bso31I GGTCTC 1 cut(s) 909
Bsp1286I GDGCHC 2 cut(s) 210, 942
Bsp143I GATC 7 cut(s) 88, 283, 367, 378, 448, 726, 933
BspACI CCGC 4 cut(s) 387, 505, 521, 863
BspANI GGCC 7 cut(s) 164, 180, 227, 257, 524, 593, 742
BspCNI CTCAG 1 cut(s) 911
BspFNI CGCG 2 cut(s) 170, 356
BspLI GGNNCC 5 cut(s) 90, 207, 468, 682, 867
BspMI ACCTGC 1 cut(s) 754
BspPI GGATC 4 cut(s) 83, 96, 456, 721
BspT107I GGYRCC 1 cut(s) 680
BspTNI GGTCTC 1 cut(s) 909
BsrDI GCAATG 1 cut(s) 412
BsrFI RCCGGY 1 cut(s) 401
BsrI ACTGG 3 cut(s) 139, 869, 1012
BssAI RCCGGY 1 cut(s) 401
BssECI CCNNGG 5 cut(s) 258, 277, 498, 611, 612
BssMI GATC 7 cut(s) 88, 283, 367, 378, 448, 726, 933
BssSI CACGAG 1 cut(s) 296
BssT1I CCWWGG 2 cut(s) 258, 498
Bst2BI CACGAG 1 cut(s) 296
Bst2UI CCWGG 3 cut(s) 278, 590, 613
Bst4CI ACNGT 4 cut(s) 346, 604, 885, 994
Bst6I CTCTTC 2 cut(s) 125, 663
BstC8I GCNNGC 4 cut(s) 166, 178, 403, 471
BstDEI CTNAG 1 cut(s) 898
BstENI CCTNNNNNAGG 1 cut(s) 308
BstF5I GGATG 5 cut(s) 14, 273, 709, 735, 1003
BstFNI CGCG 2 cut(s) 170, 356
BstHHI GCGC 2 cut(s) 170, 358
BstKTI GATC 7 cut(s) 91, 286, 370, 381, 451, 729, 936
BstMAI GTCTC 1 cut(s) 909
BstMBI GATC 7 cut(s) 88, 283, 367, 378, 448, 726, 933
BstMCI CGRYCG 1 cut(s) 525
BstMWI GCNNNNNNNGC 4 cut(s) 144, 362, 479, 494
BstNI CCWGG 3 cut(s) 278, 590, 613
BstSCI CCNGG 7 cut(s) 84, 201, 276, 524, 588, 611, 825
BstUI CGCG 2 cut(s) 170, 356
BstV1I GCAGC 1 cut(s) 847
BstX2I RGATCY 2 cut(s) 88, 726
BstYI RGATCY 2 cut(s) 88, 726
BstZI CGGCCG 1 cut(s) 522
BsuRI GGCC 7 cut(s) 164, 180, 227, 257, 524, 593, 742
BtgZI GCGATG 1 cut(s) 367
BtrI CACGTC 1 cut(s) 445
BtsCI GGATG 5 cut(s) 14, 273, 709, 735, 1003
BtsIMutI CAGTG 1 cut(s) 132
BveI ACCTGC 1 cut(s) 754
Cac8I GCNNGC 4 cut(s) 166, 178, 403, 471
CfoI GCGC 2 cut(s) 170, 358
Cfr10I RCCGGY 1 cut(s) 401
Cfr13I GGNCC 1 cut(s) 502
Csp6I GTAC 4 cut(s) 289, 681, 985, 1003
CviAII CATG 1 cut(s) 458
CviQI GTAC 4 cut(s) 289, 681, 985, 1003
DdeI CTNAG 1 cut(s) 898
DpnI GATC 7 cut(s) 90, 285, 369, 380, 450, 728, 935
DpnII GATC 7 cut(s) 88, 283, 367, 378, 448, 726, 933
DrdI GACNNNNNNGTC 1 cut(s) 623
DriI GACNNNNNGTC 1 cut(s) 348
DseDI GACNNNNNNGTC 1 cut(s) 623
EaeI YGGCCR 4 cut(s) 178, 225, 522, 740
EagI CGGCCG 1 cut(s) 522
Eam1104I CTCTTC 2 cut(s) 125, 663
Eam1105I GACNNNNNGTC 1 cut(s) 348
EarI CTCTTC 2 cut(s) 125, 663
EclXI CGGCCG 1 cut(s) 522
Eco130I CCWWGG 2 cut(s) 258, 498
Eco147I AGGCCT 1 cut(s) 257
Eco24I GRGCYC 2 cut(s) 210, 942
Eco31I GGTCTC 1 cut(s) 909
Eco47I GGWCC 1 cut(s) 502
Eco52I CGGCCG 1 cut(s) 522
EcoNI CCTNNNNNAGG 1 cut(s) 308
EcoRII CCWGG 3 cut(s) 276, 588, 611
EcoT14I CCWWGG 2 cut(s) 258, 498
EcoT38I GRGCYC 2 cut(s) 210, 942
ErhI CCWWGG 2 cut(s) 258, 498
FaeI CATG 1 cut(s) 461
FaiI YATR 5 cut(s) 155, 459, 543, 687, 822
FalI AAGNNNNNCTT 2 cut(s) 104, 136
FaqI GGGAC 2 cut(s) 629, 809
FatI CATG 1 cut(s) 457
FbaI TGATCA 1 cut(s) 367
Fnu4HI GCNGC 3 cut(s) 387, 522, 861
FokI GGATG 4 cut(s) 260, 716, 722, 1010
FriOI GRGCYC 2 cut(s) 210, 942
Fsp4HI GCNGC 3 cut(s) 387, 522, 861
FspBI CTAG 1 cut(s) 26
GlaI GCGC 2 cut(s) 169, 357
GluI GCNGC 3 cut(s) 387, 522, 861
HaeIII GGCC 7 cut(s) 164, 180, 227, 257, 524, 593, 742
HapII CCGG 9 cut(s) 70, 86, 202, 224, 402, 525, 594, 739, 827
HhaI GCGC 2 cut(s) 170, 358
Hin1II CATG 1 cut(s) 461
Hin6I GCGC 2 cut(s) 168, 356
HinP1I GCGC 2 cut(s) 168, 356
HinfI GANTC 5 cut(s) 75, 115, 264, 453, 529
HpaII CCGG 9 cut(s) 70, 86, 202, 224, 402, 525, 594, 739, 827
HphI GGTGA 3 cut(s) 293, 346, 647
Hpy166II GTNNAC 1 cut(s) 987
Hpy188I TCNGA 4 cut(s) 128, 430, 585, 1022
Hpy188III TCNNGA 3 cut(s) 412, 811, 854
Hpy8I GTNNAC 1 cut(s) 987
Hpy99I CGWCG 2 cut(s) 346, 446
HpyAV CCTTC 6 cut(s) 166, 199, 304, 435, 772, 808
HpyCH4III ACNGT 4 cut(s) 346, 604, 885, 994
HpyCH4IV ACGT 1 cut(s) 444
HpyCH4V TGCA 1 cut(s) 44
HpyF10VI GCNNNNNNNGC 4 cut(s) 144, 362, 479, 494
HpyF3I CTNAG 1 cut(s) 898
HpySE526I ACGT 1 cut(s) 444
Hsp92II CATG 1 cut(s) 461
HspAI GCGC 2 cut(s) 168, 356
KpnI GGTACC 1 cut(s) 684
KroI GCCGGC 1 cut(s) 401
KroNI GCCGGC 1 cut(s) 403
Ksp22I TGATCA 1 cut(s) 367
Kzo9I GATC 7 cut(s) 88, 283, 367, 378, 448, 726, 933
LmnI GCTCC 4 cut(s) 205, 466, 596, 832
Lsp1109I GCAGC 1 cut(s) 847
MaeI CTAG 1 cut(s) 26
MaeII ACGT 1 cut(s) 444
MaeIII GTNAC 3 cut(s) 350, 566, 893
MalI GATC 7 cut(s) 90, 285, 369, 380, 450, 728, 935
MboI GATC 7 cut(s) 88, 283, 367, 378, 448, 726, 933
MboII GAAGA 4 cut(s) 112, 680, 802, 805
MflI RGATCY 2 cut(s) 88, 726
MhlI GDGCHC 2 cut(s) 210, 942
MlsI TGGCCA 1 cut(s) 180
MluCI AATT 1 cut(s) 268
MluNI TGGCCA 1 cut(s) 180
MlyI GAGTC 3 cut(s) 69, 273, 462
Mox20I TGGCCA 1 cut(s) 180
MroNI GCCGGC 1 cut(s) 401
MscI TGGCCA 1 cut(s) 180
MseI TTAA 4 cut(s) 318, 393, 660, 693
MslI CAYNNNNRTG 2 cut(s) 542, 992
Msp20I TGGCCA 1 cut(s) 180
MspI CCGG 9 cut(s) 70, 86, 202, 224, 402, 525, 594, 739, 827
MspR9I CCNGG 7 cut(s) 86, 203, 278, 526, 590, 613, 827
MvaI CCWGG 3 cut(s) 278, 590, 613
MvnI CGCG 2 cut(s) 170, 356
MwoI GCNNNNNNNGC 4 cut(s) 144, 362, 479, 494
NaeI GCCGGC 1 cut(s) 403
NciI CCSGG 4 cut(s) 86, 203, 526, 827
NdeII GATC 7 cut(s) 88, 283, 367, 378, 448, 726, 933
NgoMIV GCCGGC 1 cut(s) 401
NlaIII CATG 1 cut(s) 461
NlaIV GGNNCC 5 cut(s) 90, 207, 468, 682, 867
NmuCI GTSAC 2 cut(s) 350, 893
OliI CACNNNNGTG 2 cut(s) 542, 992
PaqCI CACCTGC 1 cut(s) 754
PasI CCCWGGG 1 cut(s) 612
PceI AGGCCT 1 cut(s) 257
PdiI GCCGGC 1 cut(s) 403
PfeI GAWTC 2 cut(s) 115, 529
PflFI GACNNNGTC 1 cut(s) 620
PflMI CCANNNNNTGG 1 cut(s) 463
PfoI TCCNGGA 3 cut(s) 84, 201, 825
PkrI GCNGC 3 cut(s) 388, 523, 862
PleI GAGTC 3 cut(s) 69, 272, 461
PpsI GAGTC 3 cut(s) 69, 272, 461
Psp6I CCWGG 3 cut(s) 276, 588, 611
PspGI CCWGG 3 cut(s) 276, 588, 611
PspN4I GGNNCC 5 cut(s) 90, 207, 468, 682, 867
PspPI GGNCC 1 cut(s) 502
PsuI RGATCY 2 cut(s) 88, 726
PsyI GACNNNGTC 1 cut(s) 620
RsaI GTAC 4 cut(s) 290, 682, 986, 1004
RsaNI GTAC 4 cut(s) 289, 681, 985, 1003
RseI CAYNNNNRTG 2 cut(s) 542, 992
SaqAI TTAA 4 cut(s) 318, 393, 660, 693
SatI GCNGC 3 cut(s) 387, 522, 861
Sau3AI GATC 7 cut(s) 88, 283, 367, 378, 448, 726, 933
Sau96I GGNCC 1 cut(s) 502
SchI GAGTC 3 cut(s) 69, 273, 462
ScrFI CCNGG 7 cut(s) 86, 203, 278, 526, 590, 613, 827
SduI GDGCHC 2 cut(s) 210, 942
SinI GGWCC 1 cut(s) 502
SmiMI CAYNNNNRTG 2 cut(s) 542, 992
Sse9I AATT 1 cut(s) 268
SseBI AGGCCT 1 cut(s) 257
SsiI CCGC 4 cut(s) 387, 505, 521, 863
SspMI CTAG 1 cut(s) 26
StuI AGGCCT 1 cut(s) 257
StyD4I CCNGG 7 cut(s) 84, 201, 276, 524, 588, 611, 825
StyI CCWWGG 2 cut(s) 258, 498
TaaI ACNGT 4 cut(s) 346, 604, 885, 994
TaiI ACGT 1 cut(s) 447
TaqI TCGA 7 cut(s) 159, 243, 327, 341, 451, 810, 936
TaqII GACCGA 1 cut(s) 881
TasI AATT 1 cut(s) 268
TatI WGTACW 1 cut(s) 984
TauI GCSGC 2 cut(s) 389, 524
TfiI GAWTC 2 cut(s) 115, 529
Tru1I TTAA 4 cut(s) 318, 393, 660, 693
Tru9I TTAA 4 cut(s) 318, 393, 660, 693
TscAI CASTG 1 cut(s) 139
TseFI GTSAC 2 cut(s) 350, 893
TseI GCWGC 1 cut(s) 860
Tsp45I GTSAC 2 cut(s) 350, 893
TspDTI ATGAA 4 cut(s) 27, 112, 142, 262
TspRI CASTG 1 cut(s) 139
Tth111I GACNNNGTC 1 cut(s) 620
Van91I CCANNNNNTGG 1 cut(s) 463
VpaK11BI GGWCC 1 cut(s) 502
XagI CCTNNNNNAGG 1 cut(s) 308
XcmI CCANNNNNNNNNTGG 1 cut(s) 697
XspI CTAG 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.