Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000175

Orthogroup ID

OG0005597

Physical Location & Seq

Genomic Coordinates Forward (+)

368833 .. 371581

Gene Structure 2749 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_175G00432080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGGCAGAAACCAAATCCAAGATTCTCATTGTCGGAAGCACCGGCTTCATTGGAAAACACCTCGTCGAAGCCAGCGCGAAAGCCGGTCACCCAACCTTTGCTCTGGTCGATGTGGTGATTTCAACAGTGGACCACTCCCAATTAGCAGATCAACGCAAGATTATAACTGCAATTAAAGAAGCTGGCAATGTCAAGAGATTTTTCCCTTCCGAGTTTGGCAACGATGTCGATCGAGCTCATGCTGTTGAGCCAGCGAAAACAACGTATGCTGTGAAAGCTGACTTTCGCAGAGAAGTTGAGGCATCGGGGATTCCGTACACCTATATCGTTGGCAATTTCTTTTCTGGCTACTTCTTGCCCACTTTGAATCAGCCTGGAGCCACTGCCCTCCAAGGGATAAAATCGGTGGCAATTGGTCATGATGGCATGTTAGCTATATTTAACAAGGAACAGGACGTTAGTACCTATACTATTAAGGCTGTGGATGATCCGAGAACCTTAAACAAGATCCTCTACATCATGCCCCCGGGCAACACCGTCTCCTTCAACGAAATTGTATCTCTCTGGGAGAAGAAGATTGGCAAGACCCTTGAGAAGATACATGTTCCGGAAGAACAGCTCCTCAAGAAGATTCAAGAGGCTGTGGAACCAATCAAATCGCTACTGTGTTATGGTTACTCGGTCTTCGTGAAGGGAGACCATACTAACTTTGAGGTCGAGCCCACATTCGGAGTAGAAGCTACTGAACTTTACCCTGATGTCAAATACACTTCAGTGGACGAGTACCTCAACCAATTTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009806 GO:0009807 GO:0009987 GO:0010035 GO:0010038 GO:0016491 GO:0016651 GO:0019438 GO:0019748 GO:0042221 GO:0044237 GO:0044249 GO:0044550 GO:0046686 GO:0050664 GO:0050896 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NmrA

Protein Analysis

267

Amino Acids

29.55

Weight (kDa)

5.84

Isoelectric Point (pI)

19.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NmrA	PF05368	4 - 36	3.5e-07	NmrA-like family
NmrA	PF05368	36 - 263	9.8e-59	NmrA-like family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005597)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39230
fragaria_vesca	FvH4_2g09110 FvH4_2g09120
malus_domestica	MD10G1073200.v1.1 MD10G1073500.v1.1
prunus_persica	Prupe.8G094500_v2.0.a1
pyrus_communis	pycom10g05770 pycom10g05780
rosa_chinensis	RchiOBHm_Chr6g0265001 RchiOBHm_Chr6g0265011
rosa_laevigata	RLG00000014216 RLG00000014221 RLG00000014224
rosa_multiflora	Rmu_sc0000546.1_g000080 Rmu_sc0002934.1_g000023
rosa_roxburghii	Rroxscaffold_175G00432080 Rroxscaffold_175G00432090 Rroxscaffold_7G00203100 Rroxscaffold_7G00203110
rosa_rugosa	Rorug06G0013800 Rorug06G0013900
rosa_samantha	Rh6AG136100 Rh6BG132900 Rh6BG133100 Rh6DG118700 Rh6DG118900
rosa_wichuraiana	Rw6G011720 Rw6G011730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	164
AccII	CGCG	1 cut(s)	77
AccIII	TCCGGA	1 cut(s)	607
AclWI	GGATC	2 cut(s)	482, 502
AcuI	CTGAAG	1 cut(s)	756
AfaI	GTAC	3 cut(s)	317, 463, 785
AfiI	CCNNNNNNNGG	2 cut(s)	393, 728
AflIII	ACRYGT	1 cut(s)	601
AgsI	TTSAA	4 cut(s)	123, 367, 547, 635
AjnI	CCWGG	1 cut(s)	373
AleI	CACNNNNGTG	1 cut(s)	773
AluBI	AGCT	6 cut(s)	182, 236, 278, 434, 619, 740
AluI	AGCT	6 cut(s)	182, 236, 278, 434, 619, 740
Alw21I	GWGCWC	1 cut(s)	238
Alw26I	GTCTC	2 cut(s)	544, 690
AlwI	GGATC	2 cut(s)	482, 502
Ama87I	CYCGRG	1 cut(s)	526
Aor13HI	TCCGGA	1 cut(s)	607
AspLEI	GCGC	1 cut(s)	77
AspS9I	GGNCC	1 cut(s)	130
AsuC2I	CCSGG	2 cut(s)	527, 528
AsuHPI	GGTGA	2 cut(s)	80, 127
AvaI	CYCGRG	1 cut(s)	526
AvaII	GGWCC	1 cut(s)	130
BaeI	ACNNNNGTAYC	2 cut(s)	445, 478
BanII	GRGCYC	2 cut(s)	238, 723
BbsI	GAAGAC	1 cut(s)	676
Bbv12I	GWGCWC	1 cut(s)	238
BccI	CCATC	1 cut(s)	416
BcgI	CGANNNNNNTGC	2 cut(s)	208, 242
BciT130I	CCWGG	1 cut(s)	375
BcnI	CCSGG	2 cut(s)	527, 528
BcoDI	GTCTC	2 cut(s)	544, 690
Bme1390I	CCNGG	3 cut(s)	375, 527, 528
Bme18I	GGWCC	1 cut(s)	130
BmeT110I	CYCGRG	1 cut(s)	526
BmgT120I	GGNCC	1 cut(s)	130
BmiI	GGNNCC	2 cut(s)	379, 648
BmrFI	CCNGG	3 cut(s)	375, 527, 528
BmsI	GCATC	1 cut(s)	311
BpiI	GAAGAC	1 cut(s)	676
BpmI	CTGGAG	1 cut(s)	396
BpuEI	CTTGAG	2 cut(s)	608, 611
BpuMI	CCSGG	2 cut(s)	527, 528
BsaBI	GATNNNNATC	1 cut(s)	228
BsaI	GGTCTC	1 cut(s)	690
BsaJI	CCNNGG	3 cut(s)	391, 525, 526
BsaWI	WCCGGW	1 cut(s)	607
BsaXI	ACNNNNNCTCC	2 cut(s)	524, 554
Bsc4I	CCNNNNNNNGG	2 cut(s)	393, 728
Bse118I	RCCGGY	2 cut(s)	41, 83
Bse3DI	GCAATG	1 cut(s)	193
Bse8I	GATNNNNATC	1 cut(s)	228
BseAI	TCCGGA	1 cut(s)	607
BseBI	CCWGG	1 cut(s)	375
BseDI	CCNNGG	3 cut(s)	391, 525, 526
BseGI	GGATG	1 cut(s)	490
BseJI	GATNNNNATC	1 cut(s)	228
BseLI	CCNNNNNNNGG	2 cut(s)	393, 728
BseMI	GCAATG	1 cut(s)	193
BseRI	GAGGAG	1 cut(s)	611
Bsh1236I	CGCG	1 cut(s)	77
Bsh1285I	CGRYCG	1 cut(s)	232
BsiEI	CGRYCG	1 cut(s)	232
BsiHKAI	GWGCWC	1 cut(s)	238
BsiHKCI	CYCGRG	1 cut(s)	526
BsiSI	CCGG	4 cut(s)	42, 84, 527, 608
BslI	CCNNNNNNNGG	2 cut(s)	393, 728
BsmAI	GTCTC	2 cut(s)	544, 690
BsmBI	CGTCTC	1 cut(s)	544
Bso31I	GGTCTC	1 cut(s)	690
BsoBI	CYCGRG	1 cut(s)	526
Bsp1286I	GDGCHC	2 cut(s)	238, 723
Bsp13I	TCCGGA	1 cut(s)	607
Bsp143I	GATC	4 cut(s)	148, 229, 487, 507
BspEI	TCCGGA	1 cut(s)	607
BspFNI	CGCG	1 cut(s)	77
BspHI	TCATGA	1 cut(s)	418
BspLI	GGNNCC	2 cut(s)	379, 648
BspPI	GGATC	2 cut(s)	482, 502
BspTNI	GGTCTC	1 cut(s)	690
BsrDI	GCAATG	1 cut(s)	193
BsrFI	RCCGGY	2 cut(s)	41, 83
BssAI	RCCGGY	2 cut(s)	41, 83
BssECI	CCNNGG	3 cut(s)	391, 525, 526
BssMI	GATC	4 cut(s)	148, 229, 487, 507
BssT1I	CCWWGG	1 cut(s)	391
Bst2UI	CCWGG	1 cut(s)	375
Bst4CI	ACNGT	3 cut(s)	127, 538, 666
BstC8I	GCNNGC	3 cut(s)	73, 184, 252
BstEII	GGTNACC	1 cut(s)	86
BstF5I	GGATG	1 cut(s)	490
BstFNI	CGCG	1 cut(s)	77
BstHHI	GCGC	1 cut(s)	77
BstKTI	GATC	4 cut(s)	151, 232, 490, 510
BstMAI	GTCTC	2 cut(s)	544, 690
BstMBI	GATC	4 cut(s)	148, 229, 487, 507
BstMCI	CGRYCG	1 cut(s)	232
BstMWI	GCNNNNNNNGC	1 cut(s)	275
BstNI	CCWGG	1 cut(s)	375
BstNSI	RCATGY	2 cut(s)	430, 605
BstPI	GGTNACC	1 cut(s)	86
BstSCI	CCNGG	3 cut(s)	373, 525, 526
BstUI	CGCG	1 cut(s)	77
BstV2I	GAAGAC	1 cut(s)	676
BstX2I	RGATCY	1 cut(s)	507
BstYI	RGATCY	1 cut(s)	507
BtsCI	GGATG	1 cut(s)	490
BtsI	GCAGTG	1 cut(s)	381
BtsIMutI	CAGTG	3 cut(s)	132, 381, 780
Cac8I	GCNNGC	3 cut(s)	73, 184, 252
CciI	TCATGA	1 cut(s)	418
CfoI	GCGC	1 cut(s)	77
Cfr10I	RCCGGY	2 cut(s)	41, 83
Cfr13I	GGNCC	1 cut(s)	130
Cfr9I	CCCGGG	1 cut(s)	526
Csp6I	GTAC	3 cut(s)	316, 462, 784
CviAII	CATG	5 cut(s)	239, 419, 427, 520, 602
CviQI	GTAC	3 cut(s)	316, 462, 784
DpnI	GATC	4 cut(s)	150, 231, 489, 509
DpnII	GATC	4 cut(s)	148, 229, 487, 507
Ecl136II	GAGCTC	1 cut(s)	236
Eco130I	CCWWGG	1 cut(s)	391
Eco24I	GRGCYC	2 cut(s)	238, 723
Eco31I	GGTCTC	1 cut(s)	690
Eco47I	GGWCC	1 cut(s)	130
Eco53kI	GAGCTC	1 cut(s)	236
Eco57I	CTGAAG	1 cut(s)	756
Eco88I	CYCGRG	1 cut(s)	526
Eco91I	GGTNACC	1 cut(s)	86
EcoICRI	GAGCTC	1 cut(s)	236
EcoO65I	GGTNACC	1 cut(s)	86
EcoRII	CCWGG	1 cut(s)	373
EcoT14I	CCWWGG	1 cut(s)	391
EcoT38I	GRGCYC	2 cut(s)	238, 723
ErhI	CCWWGG	1 cut(s)	391
Esp3I	CGTCTC	1 cut(s)	544
FaeI	CATG	5 cut(s)	242, 422, 430, 523, 605
FatI	CATG	5 cut(s)	238, 418, 426, 519, 601
FokI	GGATG	1 cut(s)	497
FriOI	GRGCYC	2 cut(s)	238, 723
GlaI	GCGC	1 cut(s)	76
GsuI	CTGGAG	1 cut(s)	396
HapII	CCGG	4 cut(s)	42, 84, 527, 608
HhaI	GCGC	1 cut(s)	77
Hin1II	CATG	5 cut(s)	242, 422, 430, 523, 605
Hin6I	GCGC	1 cut(s)	75
HinP1I	GCGC	1 cut(s)	75
HinfI	GANTC	4 cut(s)	22, 310, 367, 631
HpaII	CCGG	4 cut(s)	42, 84, 527, 608
HphI	GGTGA	2 cut(s)	80, 127
Hpy166II	GTNNAC	3 cut(s)	130, 318, 778
Hpy188I	TCNGA	4 cut(s)	35, 211, 492, 731
Hpy188III	TCNNGA	6 cut(s)	193, 419, 608, 625, 635, 688
Hpy8I	GTNNAC	3 cut(s)	130, 318, 778
Hpy99I	CGWCG	1 cut(s)	68
HpyAV	CCTTC	3 cut(s)	216, 553, 685
HpyCH4III	ACNGT	3 cut(s)	127, 538, 666
HpyCH4IV	ACGT	2 cut(s)	263, 456
HpyCH4V	TGCA	1 cut(s)	170
HpyF10VI	GCNNNNNNNGC	1 cut(s)	275
HpySE526I	ACGT	2 cut(s)	263, 456
Hsp92II	CATG	5 cut(s)	242, 422, 430, 523, 605
HspAI	GCGC	1 cut(s)	75
Kpn2I	TCCGGA	1 cut(s)	607
Kzo9I	GATC	4 cut(s)	148, 229, 487, 507
LmnI	GCTCC	2 cut(s)	377, 624
LweI	GCATC	1 cut(s)	311
MaeII	ACGT	2 cut(s)	263, 456
MaeIII	GTNAC	2 cut(s)	86, 674
MalI	GATC	4 cut(s)	150, 231, 489, 509
MboI	GATC	4 cut(s)	148, 229, 487, 507
MboII	GAAGA	6 cut(s)	583, 586, 607, 623, 640, 676
MfeI	CAATTG	1 cut(s)	411
MflI	RGATCY	1 cut(s)	507
MhlI	GDGCHC	2 cut(s)	238, 723
MluCI	AATT	6 cut(s)	140, 171, 334, 411, 552, 794
MmeI	TCCRAC	1 cut(s)	13
MnlI	CCTC	8 cut(s)	71, 292, 398, 521, 631, 632, 706, 797
MroI	TCCGGA	1 cut(s)	607
MseI	TTAA	4 cut(s)	174, 441, 474, 500
MslI	CAYNNNNRTG	1 cut(s)	773
MspI	CCGG	4 cut(s)	42, 84, 527, 608
MspR9I	CCNGG	3 cut(s)	375, 527, 528
MunI	CAATTG	1 cut(s)	411
MvaI	CCWGG	1 cut(s)	375
MvnI	CGCG	1 cut(s)	77
MwoI	GCNNNNNNNGC	1 cut(s)	275
NciI	CCSGG	2 cut(s)	527, 528
NdeII	GATC	4 cut(s)	148, 229, 487, 507
NlaIII	CATG	5 cut(s)	242, 422, 430, 523, 605
NlaIV	GGNNCC	2 cut(s)	379, 648
NmuCI	GTSAC	1 cut(s)	86
NspI	RCATGY	2 cut(s)	430, 605
OliI	CACNNNNGTG	1 cut(s)	773
PagI	TCATGA	1 cut(s)	418
PciI	ACATGT	1 cut(s)	601
PcsI	WCGNNNNNNNCGW	1 cut(s)	311
PfeI	GAWTC	4 cut(s)	22, 310, 367, 631
Ple19I	CGATCG	1 cut(s)	232
PscI	ACATGT	1 cut(s)	601
PsiI	TTATAA	1 cut(s)	164
Psp124BI	GAGCTC	1 cut(s)	238
Psp6I	CCWGG	1 cut(s)	373
PspEI	GGTNACC	1 cut(s)	86
PspGI	CCWGG	1 cut(s)	373
PspN4I	GGNNCC	2 cut(s)	379, 648
PspPI	GGNCC	1 cut(s)	130
PsuI	RGATCY	1 cut(s)	507
PvuI	CGATCG	1 cut(s)	232
RsaI	GTAC	3 cut(s)	317, 463, 785
RsaNI	GTAC	3 cut(s)	316, 462, 784
RseI	CAYNNNNRTG	1 cut(s)	773
SacI	GAGCTC	1 cut(s)	238
SaqAI	TTAA	4 cut(s)	174, 441, 474, 500
Sau3AI	GATC	4 cut(s)	148, 229, 487, 507
Sau96I	GGNCC	1 cut(s)	130
ScrFI	CCNGG	3 cut(s)	375, 527, 528
SduI	GDGCHC	2 cut(s)	238, 723
SfaNI	GCATC	1 cut(s)	311
SinI	GGWCC	1 cut(s)	130
SmaI	CCCGGG	1 cut(s)	528
SmiMI	CAYNNNNRTG	1 cut(s)	773
SmlI	CTYRAG	2 cut(s)	590, 623
SmoI	CTYRAG	2 cut(s)	590, 623
Sse9I	AATT	6 cut(s)	140, 171, 334, 411, 552, 794
SstI	GAGCTC	1 cut(s)	238
StyD4I	CCNGG	3 cut(s)	373, 525, 526
StyI	CCWWGG	1 cut(s)	391
TaaI	ACNGT	3 cut(s)	127, 538, 666
TaiI	ACGT	2 cut(s)	266, 459
TaqI	TCGA	5 cut(s)	66, 108, 228, 232, 717
TaqII	GACCGA	1 cut(s)	670
TasI	AATT	6 cut(s)	140, 171, 334, 411, 552, 794
TfiI	GAWTC	4 cut(s)	22, 310, 367, 631
Tru1I	TTAA	4 cut(s)	174, 441, 474, 500
Tru9I	TTAA	4 cut(s)	174, 441, 474, 500
TscAI	CASTG	3 cut(s)	132, 388, 780
TseFI	GTSAC	1 cut(s)	86
Tsp45I	GTSAC	1 cut(s)	86
TspDTI	ATGAA	1 cut(s)	37
TspGWI	ACGGA	1 cut(s)	303
TspMI	CCCGGG	1 cut(s)	526
TspRI	CASTG	3 cut(s)	132, 388, 780
VpaK11BI	GGWCC	1 cut(s)	130
XceI	RCATGY	2 cut(s)	430, 605
XmaI	CCCGGG	1 cut(s)	526

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.