Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000175

Orthogroup ID

OG0005597

Physical Location & Seq

Genomic Coordinates Forward (+)

373332 .. 377545

Gene Structure 4214 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_175G00432090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGATGAGAGAAGTGGTGCTCCGACATTGGGTGGAGAACGGTCGGAAGTAGAGAAGGAGGAGGAGAGCCCGCGAAGGCTGGCCACCCCCACCTTCGCTCTCGTCCGGGAGCCCACTCTCTCCAATCCGGCCAAGTCTAAAGTCATCGACAGCTTCAAGGCCTTGGGAGTCAATTTCATCCTGGGTGATCTGTACGACCACGAGAGCCTTGTGAAGGCGATTAAGCAAGTCGATGTGGTGATTTCGACGGTGGGTCACGCGCAGTTGGCTGATCAAGGCAAGATCATCGCCGCCATTAAAGAAGCCGGCAATGTCAAGGTTTTTCCTTCCGAGTTTGGAAACGACGTGGATCGAGTCCATGCTGTGGAGCCAGCAAAGACGGCGTTCGCTACGAAAGCCAAGGTCCGCAGAGATGTTGAGGCGGCCGGGATTCCCTACACTTATGTGTCATCAAACTTCTTTGCTGGTTACTTCTTGCCCAATCTGAACCAGGCCGGAGCTACTGTTCCTCCCAGGGACAAAGTCGTCATTTTGGGTGATGGCAACCCCAAAGCAATCTTTAACAAGGAAGAGGATATTGGTACCTATACCATTAAGGCTGTGGATGACCCAAGAACATTGAACAAGATCCTCTACATCCGGCCACCTGCCAACACCATCTCCTTCAACGAACTTGTGGCTCTTTGGGAGAAGAAGATTGGAAAAACCATCGAGAAGGCTGCGGTTCCAGTCAATGTGATACTGTCAATCGGTCACTCAGTTTTTGTGAAAGGAGACCACACTAACTTTGAGATCGAGCCCTCATTTGGAGTGGAAGCTACTGCTCTTTACCCTGATGTCAAGTACACTACTGTGGATGAGTACCTCTCCCAGTTCGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009806 GO:0009807 GO:0009987 GO:0010035 GO:0010038 GO:0016491 GO:0016651 GO:0019438 GO:0019748 GO:0042221 GO:0044237 GO:0044249 GO:0044550 GO:0046686 GO:0050664 GO:0050896 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NmrA

Protein Analysis

293

Amino Acids

31.99

Weight (kDa)

5.66

Isoelectric Point (pI)

33.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NmrA	PF05368	30 - 289	1.3e-76	NmrA-like family
NAD_binding_10	PF13460	50 - 151	8.3e-08	NAD(P)H-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005597)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39230
fragaria_vesca	FvH4_2g09110 FvH4_2g09120
malus_domestica	MD10G1073200.v1.1 MD10G1073500.v1.1
prunus_persica	Prupe.8G094500_v2.0.a1
pyrus_communis	pycom10g05770 pycom10g05780
rosa_chinensis	RchiOBHm_Chr6g0265001 RchiOBHm_Chr6g0265011
rosa_laevigata	RLG00000014216 RLG00000014221 RLG00000014224
rosa_multiflora	Rmu_sc0000546.1_g000080 Rmu_sc0002934.1_g000023
rosa_roxburghii	Rroxscaffold_175G00432080 Rroxscaffold_175G00432090 Rroxscaffold_7G00203100 Rroxscaffold_7G00203110
rosa_rugosa	Rorug06G0013800 Rorug06G0013900
rosa_samantha	Rh6AG136100 Rh6BG132900 Rh6BG133100 Rh6DG118700 Rh6DG118900
rosa_wichuraiana	Rw6G011720 Rw6G011730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	655
AasI	GACNNNNNNGTC	1 cut(s)	524
Acc36I	ACCTGC	1 cut(s)	655
Acc65I	GGTACC	1 cut(s)	581
AccB1I	GGYRCC	1 cut(s)	581
AccB7I	CCANNNNNTGG	1 cut(s)	364
AccII	CGCG	2 cut(s)	73, 260
AciI	CCGC	5 cut(s)	71, 291, 406, 422, 722
AclWI	GGATC	2 cut(s)	357, 622
AcoI	YGGCCR	4 cut(s)	81, 129, 423, 641
AfaI	GTAC	4 cut(s)	194, 583, 845, 863
AfiI	CCNNNNNNNGG	4 cut(s)	29, 214, 364, 806
AgsI	TTSAA	3 cut(s)	157, 622, 667
AhdI	GACNNNNNGTC	1 cut(s)	252
AjiI	CACGTC	1 cut(s)	346
AjnI	CCWGG	3 cut(s)	180, 489, 512
AjuI	GAANNNNNNNTTGG	2 cut(s)	561, 593
AleI	CACNNNNGTG	2 cut(s)	443, 851
AloI	GAACNNNNNNTCC	2 cut(s)	489, 521
AluBI	AGCT	3 cut(s)	153, 500, 818
AluI	AGCT	3 cut(s)	153, 500, 818
Alw21I	GWGCWC	1 cut(s)	22
Alw26I	GTCTC	1 cut(s)	768
AlwI	GGATC	2 cut(s)	357, 622
AoxI	GGCC	6 cut(s)	81, 129, 159, 423, 492, 641
ApeKI	GCWGC	1 cut(s)	719
Asp718I	GGTACC	1 cut(s)	581
AspLEI	GCGC	1 cut(s)	262
AspS9I	GGNCC	1 cut(s)	403
AsuC2I	CCSGG	2 cut(s)	107, 427
AsuHPI	GGTGA	3 cut(s)	197, 250, 548
AvaII	GGWCC	1 cut(s)	403
BalI	TGGCCA	1 cut(s)	83
BanI	GGYRCC	1 cut(s)	581
BanII	GRGCYC	3 cut(s)	71, 114, 801
BauI	CACGAG	1 cut(s)	200
Bbv12I	GWGCWC	1 cut(s)	22
BbvI	GCAGC	1 cut(s)	706
BccI	CCATC	3 cut(s)	533, 665, 716
BceAI	ACGGC	1 cut(s)	396
BcgI	CGANNNNNNTGC	4 cut(s)	268, 302, 701, 735
BciT130I	CCWGG	3 cut(s)	182, 491, 514
BclI	TGATCA	1 cut(s)	271
BcnI	CCSGG	2 cut(s)	107, 427
BcoDI	GTCTC	1 cut(s)	768
BfuAI	ACCTGC	1 cut(s)	655
BisI	GCNGC	3 cut(s)	291, 423, 720
BlsI	GCNGC	3 cut(s)	292, 424, 721
Bme1390I	CCNGG	5 cut(s)	107, 182, 427, 491, 514
Bme18I	GGWCC	1 cut(s)	403
BmeRI	GACNNNNNGTC	1 cut(s)	252
BmgBI	CACGTC	1 cut(s)	346
BmgT120I	GGNCC	1 cut(s)	403
BmiI	GGNNCC	4 cut(s)	111, 369, 583, 726
BmrFI	CCNGG	5 cut(s)	107, 182, 427, 491, 514
BmrI	ACTGGG	1 cut(s)	865
BmuI	ACTGGG	1 cut(s)	865
BplI	GAGNNNNNCTC	1 cut(s)	851
BpuMI	CCSGG	2 cut(s)	107, 427
BsaI	GGTCTC	1 cut(s)	768
BsaJI	CCNNGG	5 cut(s)	162, 181, 399, 512, 513
BsaXI	ACNNNNNCTCC	6 cut(s)	489, 493, 519, 523, 644, 674
Bsc4I	CCNNNNNNNGG	4 cut(s)	29, 214, 364, 806
Bse118I	RCCGGY	1 cut(s)	305
Bse1I	ACTGG	2 cut(s)	728, 871
Bse3DI	GCAATG	1 cut(s)	316
BseBI	CCWGG	3 cut(s)	182, 491, 514
BseDI	CCNNGG	5 cut(s)	162, 181, 399, 512, 513
BseGI	GGATG	5 cut(s)	10, 177, 610, 636, 862
BseLI	CCNNNNNNNGG	4 cut(s)	29, 214, 364, 806
BseMI	GCAATG	1 cut(s)	316
BseMII	CTCAG	1 cut(s)	771
BseNI	ACTGG	2 cut(s)	728, 871
BseRI	GAGGAG	2 cut(s)	74, 77
BseX3I	CGGCCG	1 cut(s)	423
BseXI	GCAGC	1 cut(s)	706
Bsh1236I	CGCG	2 cut(s)	73, 260
Bsh1285I	CGRYCG	2 cut(s)	44, 426
BshFI	GGCC	6 cut(s)	83, 131, 161, 425, 494, 643
BshNI	GGYRCC	1 cut(s)	581
BsiEI	CGRYCG	2 cut(s)	44, 426
BsiHKAI	GWGCWC	1 cut(s)	22
BsiSI	CCGG	6 cut(s)	106, 128, 306, 426, 495, 640
BslFI	GGGAC	1 cut(s)	530
BslI	CCNNNNNNNGG	4 cut(s)	29, 214, 364, 806
BsmAI	GTCTC	1 cut(s)	768
BsmFI	GGGAC	1 cut(s)	530
BsnI	GGCC	6 cut(s)	83, 131, 161, 425, 494, 643
Bso31I	GGTCTC	1 cut(s)	768
Bsp1286I	GDGCHC	4 cut(s)	22, 71, 114, 801
Bsp143I	GATC	6 cut(s)	187, 271, 282, 349, 627, 792
BspACI	CCGC	5 cut(s)	71, 291, 406, 422, 722
BspANI	GGCC	6 cut(s)	83, 131, 161, 425, 494, 643
BspCNI	CTCAG	1 cut(s)	770
BspFNI	CGCG	2 cut(s)	73, 260
BspLI	GGNNCC	4 cut(s)	111, 369, 583, 726
BspMI	ACCTGC	1 cut(s)	655
BspPI	GGATC	2 cut(s)	357, 622
BspT107I	GGYRCC	1 cut(s)	581
BspTNI	GGTCTC	1 cut(s)	768
BsrDI	GCAATG	1 cut(s)	316
BsrFI	RCCGGY	1 cut(s)	305
BsrI	ACTGG	2 cut(s)	728, 871
BssAI	RCCGGY	1 cut(s)	305
BssECI	CCNNGG	5 cut(s)	162, 181, 399, 512, 513
BssMI	GATC	6 cut(s)	187, 271, 282, 349, 627, 792
BssSI	CACGAG	1 cut(s)	200
BssT1I	CCWWGG	2 cut(s)	162, 399
Bst2BI	CACGAG	1 cut(s)	200
Bst2UI	CCWGG	3 cut(s)	182, 491, 514
Bst4CI	ACNGT	5 cut(s)	42, 250, 505, 744, 853
Bst6I	CTCTTC	1 cut(s)	564
BstC8I	GCNNGC	4 cut(s)	71, 81, 307, 372
BstDEI	CTNAG	1 cut(s)	757
BstENI	CCTNNNNNAGG	1 cut(s)	212
BstF5I	GGATG	5 cut(s)	10, 177, 610, 636, 862
BstFNI	CGCG	2 cut(s)	73, 260
BstHHI	GCGC	1 cut(s)	262
BstKTI	GATC	6 cut(s)	190, 274, 285, 352, 630, 795
BstMAI	GTCTC	1 cut(s)	768
BstMBI	GATC	6 cut(s)	187, 271, 282, 349, 627, 792
BstMCI	CGRYCG	2 cut(s)	44, 426
BstMWI	GCNNNNNNNGC	3 cut(s)	266, 380, 395
BstNI	CCWGG	3 cut(s)	182, 491, 514
BstSCI	CCNGG	5 cut(s)	105, 180, 425, 489, 512
BstUI	CGCG	2 cut(s)	73, 260
BstV1I	GCAGC	1 cut(s)	706
BstX2I	RGATCY	1 cut(s)	627
BstYI	RGATCY	1 cut(s)	627
BstZI	CGGCCG	1 cut(s)	423
BsuRI	GGCC	6 cut(s)	83, 131, 161, 425, 494, 643
BtgZI	GCGATG	1 cut(s)	271
BtrI	CACGTC	1 cut(s)	346
BtsCI	GGATG	5 cut(s)	10, 177, 610, 636, 862
BveI	ACCTGC	1 cut(s)	655
Cac8I	GCNNGC	4 cut(s)	71, 81, 307, 372
CfoI	GCGC	1 cut(s)	262
Cfr10I	RCCGGY	1 cut(s)	305
Cfr13I	GGNCC	1 cut(s)	403
Csp6I	GTAC	4 cut(s)	193, 582, 844, 862
CviAII	CATG	1 cut(s)	359
CviQI	GTAC	4 cut(s)	193, 582, 844, 862
DdeI	CTNAG	1 cut(s)	757
DpnI	GATC	6 cut(s)	189, 273, 284, 351, 629, 794
DpnII	GATC	6 cut(s)	187, 271, 282, 349, 627, 792
DrdI	GACNNNNNNGTC	1 cut(s)	524
DriI	GACNNNNNGTC	1 cut(s)	252
DseDI	GACNNNNNNGTC	1 cut(s)	524
EaeI	YGGCCR	4 cut(s)	81, 129, 423, 641
EagI	CGGCCG	1 cut(s)	423
Eam1104I	CTCTTC	1 cut(s)	564
Eam1105I	GACNNNNNGTC	1 cut(s)	252
EarI	CTCTTC	1 cut(s)	564
EclXI	CGGCCG	1 cut(s)	423
Eco130I	CCWWGG	2 cut(s)	162, 399
Eco147I	AGGCCT	1 cut(s)	161
Eco24I	GRGCYC	3 cut(s)	71, 114, 801
Eco31I	GGTCTC	1 cut(s)	768
Eco47I	GGWCC	1 cut(s)	403
Eco52I	CGGCCG	1 cut(s)	423
EcoNI	CCTNNNNNAGG	1 cut(s)	212
EcoRII	CCWGG	3 cut(s)	180, 489, 512
EcoT14I	CCWWGG	2 cut(s)	162, 399
EcoT38I	GRGCYC	3 cut(s)	71, 114, 801
ErhI	CCWWGG	2 cut(s)	162, 399
FaeI	CATG	1 cut(s)	362
FaiI	YATR	3 cut(s)	360, 444, 588
FaqI	GGGAC	1 cut(s)	530
FatI	CATG	1 cut(s)	358
FauI	CCCGC	1 cut(s)	78
FbaI	TGATCA	1 cut(s)	271
Fnu4HI	GCNGC	3 cut(s)	291, 423, 720
FokI	GGATG	5 cut(s)	17, 164, 617, 623, 869
FriOI	GRGCYC	3 cut(s)	71, 114, 801
Fsp4HI	GCNGC	3 cut(s)	291, 423, 720
GlaI	GCGC	1 cut(s)	261
GluI	GCNGC	3 cut(s)	291, 423, 720
HaeIII	GGCC	6 cut(s)	83, 131, 161, 425, 494, 643
HapII	CCGG	6 cut(s)	106, 128, 306, 426, 495, 640
HhaI	GCGC	1 cut(s)	262
Hin1II	CATG	1 cut(s)	362
Hin6I	GCGC	1 cut(s)	260
HinP1I	GCGC	1 cut(s)	260
HinfI	GANTC	3 cut(s)	168, 354, 430
HpaII	CCGG	6 cut(s)	106, 128, 306, 426, 495, 640
HphI	GGTGA	3 cut(s)	197, 250, 548
Hpy166II	GTNNAC	1 cut(s)	846
Hpy188I	TCNGA	5 cut(s)	24, 46, 331, 486, 881
Hpy188III	TCNNGA	1 cut(s)	712
Hpy8I	GTNNAC	1 cut(s)	846
Hpy99I	CGWCG	2 cut(s)	250, 347
HpyAV	CCTTC	7 cut(s)	49, 69, 103, 208, 336, 673, 709
HpyCH4III	ACNGT	5 cut(s)	42, 250, 505, 744, 853
HpyCH4IV	ACGT	1 cut(s)	345
HpyF10VI	GCNNNNNNNGC	3 cut(s)	266, 380, 395
HpyF3I	CTNAG	1 cut(s)	757
HpySE526I	ACGT	1 cut(s)	345
Hsp92II	CATG	1 cut(s)	362
HspAI	GCGC	1 cut(s)	260
KpnI	GGTACC	1 cut(s)	585
KroI	GCCGGC	1 cut(s)	305
KroNI	GCCGGC	1 cut(s)	307
Ksp22I	TGATCA	1 cut(s)	271
Kzo9I	GATC	6 cut(s)	187, 271, 282, 349, 627, 792
LmnI	GCTCC	4 cut(s)	25, 109, 367, 497
Lsp1109I	GCAGC	1 cut(s)	706
MaeII	ACGT	1 cut(s)	345
MaeIII	GTNAC	3 cut(s)	254, 467, 752
MalI	GATC	6 cut(s)	189, 273, 284, 351, 629, 794
MboI	GATC	6 cut(s)	187, 271, 282, 349, 627, 792
MboII	GAAGA	3 cut(s)	581, 703, 706
MflI	RGATCY	1 cut(s)	627
MhlI	GDGCHC	4 cut(s)	22, 71, 114, 801
MlsI	TGGCCA	1 cut(s)	83
MluCI	AATT	1 cut(s)	172
MluNI	TGGCCA	1 cut(s)	83
MlyI	GAGTC	2 cut(s)	177, 363
MmeI	TCCRAC	2 cut(s)	24, 47
MnlI	CCTC	8 cut(s)	52, 55, 412, 519, 565, 641, 811, 875
Mox20I	TGGCCA	1 cut(s)	83
MroNI	GCCGGC	1 cut(s)	305
MscI	TGGCCA	1 cut(s)	83
MseI	TTAA	4 cut(s)	222, 297, 561, 594
MslI	CAYNNNNRTG	2 cut(s)	443, 851
Msp20I	TGGCCA	1 cut(s)	83
MspI	CCGG	6 cut(s)	106, 128, 306, 426, 495, 640
MspR9I	CCNGG	5 cut(s)	107, 182, 427, 491, 514
MvaI	CCWGG	3 cut(s)	182, 491, 514
MvnI	CGCG	2 cut(s)	73, 260
MwoI	GCNNNNNNNGC	3 cut(s)	266, 380, 395
NaeI	GCCGGC	1 cut(s)	307
NciI	CCSGG	2 cut(s)	107, 427
NdeII	GATC	6 cut(s)	187, 271, 282, 349, 627, 792
NgoMIV	GCCGGC	1 cut(s)	305
NlaIII	CATG	1 cut(s)	362
NlaIV	GGNNCC	4 cut(s)	111, 369, 583, 726
NmuCI	GTSAC	2 cut(s)	254, 752
OliI	CACNNNNGTG	2 cut(s)	443, 851
PaqCI	CACCTGC	1 cut(s)	655
PasI	CCCWGGG	1 cut(s)	513
PceI	AGGCCT	1 cut(s)	161
PdiI	GCCGGC	1 cut(s)	307
PfeI	GAWTC	1 cut(s)	430
PflFI	GACNNNGTC	1 cut(s)	521
PflMI	CCANNNNNTGG	1 cut(s)	364
PfoI	TCCNGGA	1 cut(s)	105
PkrI	GCNGC	3 cut(s)	292, 424, 721
PleI	GAGTC	2 cut(s)	176, 362
PpsI	GAGTC	2 cut(s)	176, 362
Psp6I	CCWGG	3 cut(s)	180, 489, 512
PspGI	CCWGG	3 cut(s)	180, 489, 512
PspN4I	GGNNCC	4 cut(s)	111, 369, 583, 726
PspPI	GGNCC	1 cut(s)	403
PsuI	RGATCY	1 cut(s)	627
PsyI	GACNNNGTC	1 cut(s)	521
RsaI	GTAC	4 cut(s)	194, 583, 845, 863
RsaNI	GTAC	4 cut(s)	193, 582, 844, 862
RseI	CAYNNNNRTG	2 cut(s)	443, 851
SaqAI	TTAA	4 cut(s)	222, 297, 561, 594
SatI	GCNGC	3 cut(s)	291, 423, 720
Sau3AI	GATC	6 cut(s)	187, 271, 282, 349, 627, 792
Sau96I	GGNCC	1 cut(s)	403
SchI	GAGTC	2 cut(s)	177, 363
ScrFI	CCNGG	5 cut(s)	107, 182, 427, 491, 514
SduI	GDGCHC	4 cut(s)	22, 71, 114, 801
SinI	GGWCC	1 cut(s)	403
SmiMI	CAYNNNNRTG	2 cut(s)	443, 851
Sse9I	AATT	1 cut(s)	172
SseBI	AGGCCT	1 cut(s)	161
SsiI	CCGC	5 cut(s)	71, 291, 406, 422, 722
StuI	AGGCCT	1 cut(s)	161
StyD4I	CCNGG	5 cut(s)	105, 180, 425, 489, 512
StyI	CCWWGG	2 cut(s)	162, 399
TaaI	ACNGT	5 cut(s)	42, 250, 505, 744, 853
TaiI	ACGT	1 cut(s)	348
TaqI	TCGA	6 cut(s)	147, 231, 245, 352, 711, 795
TaqII	GACCGA	1 cut(s)	740
TasI	AATT	1 cut(s)	172
TatI	WGTACW	1 cut(s)	843
TauI	GCSGC	2 cut(s)	293, 425
TfiI	GAWTC	1 cut(s)	430
Tru1I	TTAA	4 cut(s)	222, 297, 561, 594
Tru9I	TTAA	4 cut(s)	222, 297, 561, 594
TseFI	GTSAC	2 cut(s)	254, 752
TseI	GCWGC	1 cut(s)	719
Tsp45I	GTSAC	2 cut(s)	254, 752
TspDTI	ATGAA	1 cut(s)	166
Tth111I	GACNNNGTC	1 cut(s)	521
Van91I	CCANNNNNTGG	1 cut(s)	364
VpaK11BI	GGWCC	1 cut(s)	403
XagI	CCTNNNNNAGG	1 cut(s)	212
XcmI	CCANNNNNNNNNTGG	1 cut(s)	598

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.