Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0005597

Physical Location & Seq

Genomic Coordinates Reverse (-)

12725551 .. 12727578

Gene Structure 2028 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G094500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGCATTATCAGCTACCCGTCTTGCCCTCCTCTCACTCGCAACGCTCTCTCTCGCTCTCACTCTCCAACTCCTCCCATTCCCATTTCCCAATCCAATGGCAGCAACCAAATCCAAAATCCTCTTCATCGGAGGCACTGGCTACATCGGAAAGTTCATAGTCGAAGCCAGCGCCAAGGCAGGCCACCCAACCTACGCTCTGGTTCGAGAGCCCACTCTCTCTAACCCAGCCAAGGCCAAAGTCATCGAGAACTTCAAATCTTTGGGTGTTAATTTCGTCTTGGGTGATCTCTACGACCATGAGAGCCTTGTGAAGGCGATAAAGCAAGTCGATGTGGTGATTTCAACAGTGGGTCACGCTCAGTTGGCTGATCAAGGTACGATCATCGCTGCTATCAAGGAAGCTGGCAATGTTAAGAGGTTTTTCCCATCTGAGTTTGGAAACGACGTGGATCGAGTTCATGCTGTTGAGCCAGCAAAAACTGCATTTGCAACCAAGGCCAAAATTCGCAGAACGATTGAGGCTGAGGGGATCCCTCACACCTATGTGGCCTCCAACTTCTTTGCTGGCTACTTCTTGCCCACTCTGAACCAGCCCGGAGCCACTGCCCCTCCCAGGGAGAAAGTTGTCATTTTGGGTGATGGAAACCCCAAAGCAATTTTCAACAAGGAAGAGGACATTGGGGCCTACACCATTAAGGCCGTGGATGACCCAAGAACCTTGAACAAGATCCTCTACATCAGGCCCCCAGCCAACACCATCTCATTCAATGATCTTGTGTCTCTTTGGGAGAAGAAGATTGGCAAAACCCTTGAGAGGATCTATGTTCCAGAGGAGCAACTGCTCAAGAACATTGAAGAGGCTGCTGTGCCAATCAATGTGATTCTATCGATTGGTCACTCAGTTTTTGTGAAGGGAGACCATACTAACTTTGAGGTCGAGCCCTCATTTGGAGTGGAAGCTTCGGCCCTTTACCCCGATGTCAAATACACTACCGTGGACGAGTACCTTGACCAGTTTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009806 GO:0009807 GO:0009987 GO:0010035 GO:0010038 GO:0016491 GO:0016651 GO:0019438 GO:0019748 GO:0042221 GO:0044237 GO:0044249 GO:0044550 GO:0046686 GO:0050664 GO:0050896 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NmrA

Protein Analysis

342

Amino Acids

37.18

Weight (kDa)

6.41

Isoelectric Point (pI)

29.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005597)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39230
fragaria_vesca	FvH4_2g09110 FvH4_2g09120
malus_domestica	MD10G1073200.v1.1 MD10G1073500.v1.1
prunus_persica	Prupe.8G094500_v2.0.a1
pyrus_communis	pycom10g05770 pycom10g05780
rosa_chinensis	RchiOBHm_Chr6g0265001 RchiOBHm_Chr6g0265011
rosa_laevigata	RLG00000014216 RLG00000014221 RLG00000014224
rosa_multiflora	Rmu_sc0000546.1_g000080 Rmu_sc0002934.1_g000023
rosa_roxburghii	Rroxscaffold_175G00432080 Rroxscaffold_175G00432090 Rroxscaffold_7G00203100 Rroxscaffold_7G00203110
rosa_rugosa	Rorug06G0013800 Rorug06G0013900
rosa_samantha	Rh6AG136100 Rh6BG132900 Rh6BG133100 Rh6DG118700 Rh6DG118900
rosa_wichuraiana	Rw6G011720 Rw6G011730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	5 cut(s)	459, 526, 539, 724, 827
AcsI	RAATTY	1 cut(s)	504
AfaI	GTAC	2 cut(s)	379, 1007
AfiI	CCNNNNNNNGG	6 cut(s)	232, 313, 615, 616, 816, 950
AgsI	TTSAA	6 cut(s)	256, 345, 664, 724, 769, 857
AjiI	CACGTC	1 cut(s)	448
AjnI	CCWGG	1 cut(s)	614
AjuI	GAANNNNNNNTTGG	6 cut(s)	107, 139, 644, 663, 676, 695
AleI	CACNNNNGTG	2 cut(s)	545, 995
AluBI	AGCT	3 cut(s)	14, 404, 962
AluI	AGCT	3 cut(s)	14, 404, 962
Alw26I	GTCTC	2 cut(s)	786, 912
AlwI	GGATC	5 cut(s)	459, 526, 539, 724, 827
AoxI	GGCC	8 cut(s)	181, 234, 498, 549, 684, 699, 743, 966
ApeKI	GCWGC	3 cut(s)	101, 389, 863
ApoI	RAATTY	1 cut(s)	504
AspLEI	GCGC	1 cut(s)	173
AspS9I	GGNCC	3 cut(s)	684, 744, 967
AsuC2I	CCSGG	1 cut(s)	597
AsuHPI	GGTGA	3 cut(s)	296, 349, 650
BamHI	GGATCC	1 cut(s)	531
BanII	GRGCYC	2 cut(s)	213, 945
BbvCI	CCTCAGC	1 cut(s)	525
BbvI	GCAGC	3 cut(s)	113, 376, 850
BccI	CCATC	3 cut(s)	436, 635, 767
BceAI	ACGGC	1 cut(s)	686
BciT130I	CCWGG	1 cut(s)	616
BclI	TGATCA	1 cut(s)	370
BcnI	CCSGG	1 cut(s)	597
BcoDI	GTCTC	2 cut(s)	786, 912
BfoI	RGCGCY	1 cut(s)	174
BisI	GCNGC	3 cut(s)	102, 390, 864
BlsI	GCNGC	3 cut(s)	103, 391, 865
Bme1390I	CCNGG	2 cut(s)	597, 616
BmgBI	CACGTC	1 cut(s)	448
BmgT120I	GGNCC	3 cut(s)	684, 744, 967
BmiI	GGNNCC	4 cut(s)	533, 601, 685, 746
BmrFI	CCNGG	2 cut(s)	597, 616
Bpu10I	CCTNAGC	1 cut(s)	525
BpuEI	CTTGAG	2 cut(s)	830, 833
BpuMI	CCSGG	1 cut(s)	597
Bsa29I	ATCGAT	1 cut(s)	890
BsaI	GGTCTC	1 cut(s)	912
BsaJI	CCNNGG	7 cut(s)	174, 231, 495, 614, 615, 702, 996
BsaXI	ACNNNNNCTCC	2 cut(s)	595, 625
Bsc4I	CCNNNNNNNGG	6 cut(s)	232, 313, 615, 616, 816, 950
Bse1I	ACTGG	2 cut(s)	142, 1015
Bse3DI	GCAATG	1 cut(s)	415
BseBI	CCWGG	1 cut(s)	616
BseCI	ATCGAT	1 cut(s)	890
BseDI	CCNNGG	7 cut(s)	174, 231, 495, 614, 615, 702, 996
BseGI	GGATG	1 cut(s)	712
BseLI	CCNNNNNNNGG	6 cut(s)	232, 313, 615, 616, 816, 950
BseMI	GCAATG	1 cut(s)	415
BseMII	CTCAG	4 cut(s)	374, 423, 516, 915
BseNI	ACTGG	2 cut(s)	142, 1015
BseRI	GAGGAG	3 cut(s)	20, 62, 848
BseXI	GCAGC	3 cut(s)	113, 376, 850
BseYI	CCCAGC	2 cut(s)	226, 748
BshFI	GGCC	8 cut(s)	183, 236, 500, 551, 686, 701, 745, 968
BshVI	ATCGAT	1 cut(s)	890
BsiSI	CCGG	1 cut(s)	597
BslI	CCNNNNNNNGG	6 cut(s)	232, 313, 615, 616, 816, 950
BsmAI	GTCTC	2 cut(s)	786, 912
BsnI	GGCC	8 cut(s)	183, 236, 500, 551, 686, 701, 745, 968
Bso31I	GGTCTC	1 cut(s)	912
Bsp1286I	GDGCHC	2 cut(s)	213, 945
Bsp143I	GATC	8 cut(s)	286, 370, 381, 451, 531, 729, 772, 819
BspANI	GGCC	8 cut(s)	183, 236, 500, 551, 686, 701, 745, 968
BspCNI	CTCAG	4 cut(s)	373, 424, 517, 914
BspDI	ATCGAT	1 cut(s)	890
BspLI	GGNNCC	4 cut(s)	533, 601, 685, 746
BspPI	GGATC	5 cut(s)	459, 526, 539, 724, 827
BspTNI	GGTCTC	1 cut(s)	912
BsrDI	GCAATG	1 cut(s)	415
BsrI	ACTGG	2 cut(s)	142, 1015
BssECI	CCNNGG	7 cut(s)	174, 231, 495, 614, 615, 702, 996
BssMI	GATC	8 cut(s)	286, 370, 381, 451, 531, 729, 772, 819
BssT1I	CCWWGG	3 cut(s)	174, 231, 495
Bst2UI	CCWGG	1 cut(s)	616
Bst4CI	ACNGT	2 cut(s)	349, 997
Bst6I	CTCTTC	3 cut(s)	128, 666, 852
BstAPI	GCANNNNNTGC	1 cut(s)	482
BstC8I	GCNNGC	5 cut(s)	169, 181, 406, 474, 568
BstDEI	CTNAG	4 cut(s)	360, 432, 525, 901
BstDSI	CCRYGG	2 cut(s)	702, 996
BstENI	CCTNNNNNAGG	1 cut(s)	311
BstF5I	GGATG	1 cut(s)	712
BstH2I	RGCGCY	1 cut(s)	174
BstHHI	GCGC	1 cut(s)	173
BstKTI	GATC	8 cut(s)	289, 373, 384, 454, 534, 732, 775, 822
BstMAI	GTCTC	2 cut(s)	786, 912
BstMBI	GATC	8 cut(s)	286, 370, 381, 451, 531, 729, 772, 819
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 365, 482, 497
BstNI	CCWGG	1 cut(s)	616
BstSCI	CCNGG	2 cut(s)	595, 614
BstV1I	GCAGC	3 cut(s)	113, 376, 850
BstX2I	RGATCY	3 cut(s)	531, 729, 819
BstXI	CCANNNNNNTGG	1 cut(s)	97
BstYI	RGATCY	3 cut(s)	531, 729, 819
Bsu15I	ATCGAT	1 cut(s)	890
BsuRI	GGCC	8 cut(s)	183, 236, 500, 551, 686, 701, 745, 968
BsuTUI	ATCGAT	1 cut(s)	890
BtgI	CCRYGG	2 cut(s)	702, 996
BtgZI	GCGATG	1 cut(s)	370
BtrI	CACGTC	1 cut(s)	448
BtsCI	GGATG	1 cut(s)	712
BtsI	GCAGTG	1 cut(s)	603
BtsIMutI	CAGTG	3 cut(s)	135, 354, 603
Cac8I	GCNNGC	5 cut(s)	169, 181, 406, 474, 568
CfoI	GCGC	1 cut(s)	173
Cfr13I	GGNCC	3 cut(s)	684, 744, 967
ClaI	ATCGAT	1 cut(s)	890
Csp6I	GTAC	2 cut(s)	378, 1006
CviAII	CATG	2 cut(s)	299, 461
CviQI	GTAC	2 cut(s)	378, 1006
DdeI	CTNAG	4 cut(s)	360, 432, 525, 901
DpnI	GATC	8 cut(s)	288, 372, 383, 453, 533, 731, 774, 821
DpnII	GATC	8 cut(s)	286, 370, 381, 451, 531, 729, 772, 819
Eam1104I	CTCTTC	3 cut(s)	128, 666, 852
EarI	CTCTTC	3 cut(s)	128, 666, 852
Eco130I	CCWWGG	3 cut(s)	174, 231, 495
Eco24I	GRGCYC	2 cut(s)	213, 945
Eco31I	GGTCTC	1 cut(s)	912
EcoNI	CCTNNNNNAGG	1 cut(s)	311
EcoO109I	RGGNCCY	2 cut(s)	684, 744
EcoRII	CCWGG	1 cut(s)	614
EcoT14I	CCWWGG	3 cut(s)	174, 231, 495
EcoT38I	GRGCYC	2 cut(s)	213, 945
ErhI	CCWWGG	3 cut(s)	174, 231, 495
FaeI	CATG	2 cut(s)	302, 464
FaiI	YATR	6 cut(s)	158, 300, 462, 546, 825, 924
FatI	CATG	2 cut(s)	298, 460
FbaI	TGATCA	1 cut(s)	370
Fnu4HI	GCNGC	3 cut(s)	102, 390, 864
FokI	GGATG	1 cut(s)	719
FriOI	GRGCYC	2 cut(s)	213, 945
Fsp4HI	GCNGC	3 cut(s)	102, 390, 864
GlaI	GCGC	1 cut(s)	172
GluI	GCNGC	3 cut(s)	102, 390, 864
GsaI	CCCAGC	2 cut(s)	230, 752
HaeII	RGCGCY	1 cut(s)	174
HaeIII	GGCC	8 cut(s)	183, 236, 500, 551, 686, 701, 745, 968
HapII	CCGG	1 cut(s)	597
HhaI	GCGC	1 cut(s)	173
Hin1II	CATG	2 cut(s)	302, 464
Hin6I	GCGC	1 cut(s)	171
HinP1I	GCGC	1 cut(s)	171
HindIII	AAGCTT	1 cut(s)	960
HinfI	GANTC	1 cut(s)	883
HpaII	CCGG	1 cut(s)	597
HphI	GGTGA	3 cut(s)	296, 349, 650
Hpy166II	GTNNAC	1 cut(s)	1000
Hpy188I	TCNGA	4 cut(s)	131, 149, 433, 588
Hpy188III	TCNNGA	4 cut(s)	206, 247, 830, 847
Hpy8I	GTNNAC	1 cut(s)	1000
Hpy99I	CGWCG	1 cut(s)	449
HpyAV	CCTTC	2 cut(s)	307, 907
HpyCH4III	ACNGT	2 cut(s)	349, 997
HpyCH4IV	ACGT	1 cut(s)	447
HpyCH4V	TGCA	2 cut(s)	485, 491
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 365, 482, 497
HpyF3I	CTNAG	4 cut(s)	360, 432, 525, 901
HpySE526I	ACGT	1 cut(s)	447
Hsp92II	CATG	2 cut(s)	302, 464
HspAI	GCGC	1 cut(s)	171
Ksp22I	TGATCA	1 cut(s)	370
Kzo9I	GATC	8 cut(s)	286, 370, 381, 451, 531, 729, 772, 819
LmnI	GCTCC	2 cut(s)	599, 835
Lsp1109I	GCAGC	3 cut(s)	113, 376, 850
MaeII	ACGT	1 cut(s)	447
MaeIII	GTNAC	2 cut(s)	353, 896
MalI	GATC	8 cut(s)	288, 372, 383, 453, 533, 731, 774, 821
MboI	GATC	8 cut(s)	286, 370, 381, 451, 531, 729, 772, 819
MboII	GAAGA	5 cut(s)	115, 683, 805, 808, 869
MflI	RGATCY	3 cut(s)	531, 729, 819
MhlI	GDGCHC	2 cut(s)	213, 945
MluCI	AATT	3 cut(s)	271, 504, 657
MmeI	TCCRAC	2 cut(s)	91, 579
MseI	TTAA	3 cut(s)	270, 414, 696
MslI	CAYNNNNRTG	3 cut(s)	543, 545, 995
MspI	CCGG	1 cut(s)	597
MspR9I	CCNGG	2 cut(s)	597, 616
MvaI	CCWGG	1 cut(s)	616
MwoI	GCNNNNNNNGC	4 cut(s)	11, 365, 482, 497
NciI	CCSGG	1 cut(s)	597
NdeII	GATC	8 cut(s)	286, 370, 381, 451, 531, 729, 772, 819
NlaIII	CATG	2 cut(s)	302, 464
NlaIV	GGNNCC	4 cut(s)	533, 601, 685, 746
NmuCI	GTSAC	2 cut(s)	353, 896
OliI	CACNNNNGTG	2 cut(s)	545, 995
PasI	CCCWGGG	1 cut(s)	615
PfeI	GAWTC	1 cut(s)	883
PkrI	GCNGC	3 cut(s)	103, 391, 865
Psp6I	CCWGG	1 cut(s)	614
PspFI	CCCAGC	2 cut(s)	226, 748
PspGI	CCWGG	1 cut(s)	614
PspN4I	GGNNCC	4 cut(s)	533, 601, 685, 746
PspPI	GGNCC	3 cut(s)	684, 744, 967
PsuI	RGATCY	3 cut(s)	531, 729, 819
RsaI	GTAC	2 cut(s)	379, 1007
RsaNI	GTAC	2 cut(s)	378, 1006
RseI	CAYNNNNRTG	3 cut(s)	543, 545, 995
SaqAI	TTAA	3 cut(s)	270, 414, 696
SatI	GCNGC	3 cut(s)	102, 390, 864
Sau3AI	GATC	8 cut(s)	286, 370, 381, 451, 531, 729, 772, 819
Sau96I	GGNCC	3 cut(s)	684, 744, 967
ScrFI	CCNGG	2 cut(s)	597, 616
SduI	GDGCHC	2 cut(s)	213, 945
SmiMI	CAYNNNNRTG	3 cut(s)	543, 545, 995
SmlI	CTYRAG	2 cut(s)	812, 845
SmoI	CTYRAG	2 cut(s)	812, 845
Sse9I	AATT	3 cut(s)	271, 504, 657
StyD4I	CCNGG	2 cut(s)	595, 614
StyI	CCWWGG	3 cut(s)	174, 231, 495
TaaI	ACNGT	2 cut(s)	349, 997
TaiI	ACGT	1 cut(s)	450
TaqI	TCGA	7 cut(s)	162, 205, 246, 330, 454, 890, 939
TasI	AATT	3 cut(s)	271, 504, 657
TfiI	GAWTC	1 cut(s)	883
Tru1I	TTAA	3 cut(s)	270, 414, 696
Tru9I	TTAA	3 cut(s)	270, 414, 696
TscAI	CASTG	3 cut(s)	142, 354, 610
TseFI	GTSAC	2 cut(s)	353, 896
TseI	GCWGC	3 cut(s)	101, 389, 863
Tsp45I	GTSAC	2 cut(s)	353, 896
TspDTI	ATGAA	3 cut(s)	115, 145, 449
TspRI	CASTG	3 cut(s)	142, 354, 610
XagI	CCTNNNNNAGG	1 cut(s)	311
XapI	RAATTY	1 cut(s)	504
XcmI	CCANNNNNNNNNTGG	1 cut(s)	700

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.