Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0005597

Physical Location & Seq

Genomic Coordinates Forward (+)

8009219 .. 8011827

Gene Structure 2609 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g09110.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGCAGAAACCAAATCCAAGATTCTTATCGTCGGAAGCACCGGCTTCATTGGAAAACACCTCGTCGAAGCCAGTGCAAAGGCCGATCATCCAACCTTTGCTCTGGTTCGAGAACCCACCCTTTCTAACCCAGCCAAGTTCAAGATCATCGAAAGATTCAAGGCTTTGGGCGTCAACTTCGTCTTGGGTGATCTCTATGACCACGAGAGCCTTGTTAAGGCCATAAAACAAGTCAATGTTGTGATTTCAACAGTGGATCACTCTCAATTGGTAGATCAACGCAAGATTATAGCTGCAATTAAAGAAGCTGGCAATGTCAAGAGATTTTTTCCTTCTGAGTTTGGCAACGATGTCGATCGAGCCCATGCTGTTGAGCCCGCGAAGACGACGTATACTGTGAAATCTAACTTTCGCAGAGAAGTTGAGGCATCGGGGATTCCGTACACCTATATCGTCGGCAATTTCTTCTCTGGCTACTTCTTGCCCACTTTGAATCAGCCCGGAGCCACTGCCCCTCCTAGGGATAAAATTGTGGTTTTAGGTGATGGAAACACCAAAGCAATCTTTAACAAGGAACAGGACGTTAGTACCTATACTATTAAGGCTGTGGACGACCCGAGAACCTTAAACAAGATTCTGTACATCATGCCCCCGGGCAACACCGTCTCCTTCAACGAAATTGTATCTCTCTGGGAGAAGAAGATTGGCAAGACCCTTGAGAAGATATACGTTCCAGAAGAACAACTCCTCAAGAAGATTCAAGAGTCTGTGGAACCGATCAAATCGCTATTGTGTTATGGTTACTCAGTGTTCGTGAAGGGAGACCATACTAACTTTGAGGTCGAACCCTCATTCGGAGTCGAAGCTACTGAACTTTACCCTGATGTCAAATACACTTCAGTGGACGAGTACCTCAACCAGTTTATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009806 GO:0009807 GO:0009987 GO:0010035 GO:0010038 GO:0016491 GO:0016651 GO:0019438 GO:0019748 GO:0042221 GO:0044237 GO:0044249 GO:0044550 GO:0046686 GO:0050664 GO:0050896 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NmrA

Protein Analysis

310

Amino Acids

34.53

Weight (kDa)

6.62

Isoelectric Point (pI)

18.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NmrA	PF05368	4 - 305	6.8e-87	NmrA-like family
Epimerase	PF01370	8 - 84	2.5e-08	NAD dependent epimerase/dehydratase family
GDP_Man_Dehyd	PF16363	9 - 79	4.1e-06	GDP-mannose 4,6 dehydratase
NAD_binding_10	PF13460	12 - 151	7.2e-14	NAD(P)H-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005597)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39230
fragaria_vesca	FvH4_2g09110 FvH4_2g09120
malus_domestica	MD10G1073200.v1.1 MD10G1073500.v1.1
prunus_persica	Prupe.8G094500_v2.0.a1
pyrus_communis	pycom10g05770 pycom10g05780
rosa_chinensis	RchiOBHm_Chr6g0265001 RchiOBHm_Chr6g0265011
rosa_laevigata	RLG00000014216 RLG00000014221 RLG00000014224
rosa_multiflora	Rmu_sc0000546.1_g000080 Rmu_sc0002934.1_g000023
rosa_roxburghii	Rroxscaffold_175G00432080 Rroxscaffold_175G00432090 Rroxscaffold_7G00203100 Rroxscaffold_7G00203110
rosa_rugosa	Rorug06G0013800 Rorug06G0013900
rosa_samantha	Rh6AG136100 Rh6BG132900 Rh6BG133100 Rh6DG118700 Rh6DG118900
rosa_wichuraiana	Rw6G011720 Rw6G011730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	392
AccII	CGCG	1 cut(s)	380
AciI	CCGC	1 cut(s)	378
AclWI	GGATC	1 cut(s)	264
AcuI	CTGAAG	1 cut(s)	882
AcyI	GRCGYC	1 cut(s)	171
AfaI	GTAC	4 cut(s)	443, 589, 641, 911
AfiI	CCNNNNNNNGG	4 cut(s)	217, 519, 520, 854
AgsI	TTSAA	6 cut(s)	142, 160, 249, 493, 673, 761
AleI	CACNNNNGTG	1 cut(s)	899
AluBI	AGCT	3 cut(s)	293, 308, 866
AluI	AGCT	3 cut(s)	293, 308, 866
Alw26I	GTCTC	2 cut(s)	670, 816
AlwI	GGATC	1 cut(s)	264
Ama87I	CYCGRG	2 cut(s)	616, 652
AoxI	GGCC	2 cut(s)	81, 219
ApeKI	GCWGC	1 cut(s)	293
AspA2I	CCTAGG	1 cut(s)	518
AsuC2I	CCSGG	3 cut(s)	501, 653, 654
AsuHPI	GGTGA	2 cut(s)	200, 554
AvaI	CYCGRG	2 cut(s)	616, 652
AvrII	CCTAGG	1 cut(s)	518
BaeI	ACNNNNGTAYC	2 cut(s)	571, 604
BanII	GRGCYC	2 cut(s)	364, 378
BauI	CACGAG	1 cut(s)	203
BbsI	GAAGAC	1 cut(s)	389
BbvI	GCAGC	1 cut(s)	280
BccI	CCATC	1 cut(s)	539
BcgI	CGANNNNNNTGC	4 cut(s)	56, 90, 334, 368
BcnI	CCSGG	3 cut(s)	501, 653, 654
BcoDI	GTCTC	2 cut(s)	670, 816
BfaI	CTAG	1 cut(s)	519
BisI	GCNGC	1 cut(s)	294
BlnI	CCTAGG	1 cut(s)	518
BlsI	GCNGC	1 cut(s)	295
Bme1390I	CCNGG	3 cut(s)	501, 653, 654
BmeT110I	CYCGRG	2 cut(s)	616, 652
BmiI	GGNNCC	2 cut(s)	505, 774
BmrFI	CCNGG	3 cut(s)	501, 653, 654
BmsI	GCATC	1 cut(s)	437
BpiI	GAAGAC	1 cut(s)	389
BpuEI	CTTGAG	2 cut(s)	734, 737
BpuMI	CCSGG	3 cut(s)	501, 653, 654
BsaBI	GATNNNNATC	2 cut(s)	26, 354
BsaHI	GRCGYC	1 cut(s)	171
BsaI	GGTCTC	1 cut(s)	816
BsaJI	CCNNGG	3 cut(s)	518, 651, 652
BsaXI	ACNNNNNCTCC	4 cut(s)	499, 529, 650, 680
Bsc4I	CCNNNNNNNGG	4 cut(s)	217, 519, 520, 854
Bse118I	RCCGGY	1 cut(s)	41
Bse1I	ACTGG	2 cut(s)	72, 919
Bse3DI	GCAATG	1 cut(s)	319
Bse8I	GATNNNNATC	2 cut(s)	26, 354
BseDI	CCNNGG	3 cut(s)	518, 651, 652
BseGI	GGATG	1 cut(s)	88
BseJI	GATNNNNATC	2 cut(s)	26, 354
BseLI	CCNNNNNNNGG	4 cut(s)	217, 519, 520, 854
BseMI	GCAATG	1 cut(s)	319
BseMII	CTCAG	2 cut(s)	327, 819
BseNI	ACTGG	2 cut(s)	72, 919
BseRI	GAGGAG	1 cut(s)	737
BseXI	GCAGC	1 cut(s)	280
BseYI	CCCAGC	1 cut(s)	130
Bsh1236I	CGCG	1 cut(s)	380
Bsh1285I	CGRYCG	1 cut(s)	358
BshFI	GGCC	2 cut(s)	83, 221
BsiEI	CGRYCG	1 cut(s)	358
BsiHKCI	CYCGRG	2 cut(s)	616, 652
BsiSI	CCGG	3 cut(s)	42, 501, 653
BslI	CCNNNNNNNGG	4 cut(s)	217, 519, 520, 854
BsmAI	GTCTC	2 cut(s)	670, 816
BsmBI	CGTCTC	1 cut(s)	670
BsnI	GGCC	2 cut(s)	83, 221
Bso31I	GGTCTC	1 cut(s)	816
BsoBI	CYCGRG	2 cut(s)	616, 652
Bsp1286I	GDGCHC	2 cut(s)	364, 378
Bsp1407I	TGTACA	1 cut(s)	639
Bsp143I	GATC	7 cut(s)	85, 144, 190, 256, 274, 355, 777
BspACI	CCGC	1 cut(s)	378
BspANI	GGCC	2 cut(s)	83, 221
BspCNI	CTCAG	2 cut(s)	328, 818
BspFNI	CGCG	1 cut(s)	380
BspLI	GGNNCC	2 cut(s)	505, 774
BspPI	GGATC	1 cut(s)	264
BspTNI	GGTCTC	1 cut(s)	816
BsrDI	GCAATG	1 cut(s)	319
BsrFI	RCCGGY	1 cut(s)	41
BsrGI	TGTACA	1 cut(s)	639
BsrI	ACTGG	2 cut(s)	72, 919
BssAI	RCCGGY	1 cut(s)	41
BssECI	CCNNGG	3 cut(s)	518, 651, 652
BssMI	GATC	7 cut(s)	85, 144, 190, 256, 274, 355, 777
BssNAI	GTATAC	1 cut(s)	393
BssNI	GRCGYC	1 cut(s)	171
BssSI	CACGAG	1 cut(s)	203
BssT1I	CCWWGG	1 cut(s)	518
Bst1107I	GTATAC	1 cut(s)	393
Bst2BI	CACGAG	1 cut(s)	203
Bst4CI	ACNGT	3 cut(s)	253, 397, 664
BstACI	GRCGYC	1 cut(s)	171
BstAUI	TGTACA	1 cut(s)	639
BstC8I	GCNNGC	2 cut(s)	310, 378
BstDEI	CTNAG	2 cut(s)	336, 805
BstENI	CCTNNNNNAGG	1 cut(s)	215
BstF5I	GGATG	1 cut(s)	88
BstFNI	CGCG	1 cut(s)	380
BstKTI	GATC	7 cut(s)	88, 147, 193, 259, 277, 358, 780
BstMAI	GTCTC	2 cut(s)	670, 816
BstMBI	GATC	7 cut(s)	85, 144, 190, 256, 274, 355, 777
BstMCI	CGRYCG	1 cut(s)	358
BstSCI	CCNGG	3 cut(s)	499, 651, 652
BstUI	CGCG	1 cut(s)	380
BstV1I	GCAGC	1 cut(s)	280
BstV2I	GAAGAC	1 cut(s)	389
BstZ17I	GTATAC	1 cut(s)	393
BsuRI	GGCC	2 cut(s)	83, 221
BtsCI	GGATG	1 cut(s)	88
BtsI	GCAGTG	1 cut(s)	507
BtsIMutI	CAGTG	5 cut(s)	79, 258, 507, 813, 906
Cac8I	GCNNGC	2 cut(s)	310, 378
Cfr10I	RCCGGY	1 cut(s)	41
Cfr9I	CCCGGG	1 cut(s)	652
CseI	GACGC	1 cut(s)	160
Csp6I	GTAC	4 cut(s)	442, 588, 640, 910
CviAII	CATG	2 cut(s)	365, 646
CviQI	GTAC	4 cut(s)	442, 588, 640, 910
DdeI	CTNAG	2 cut(s)	336, 805
DpnI	GATC	7 cut(s)	87, 146, 192, 258, 276, 357, 779
DpnII	GATC	7 cut(s)	85, 144, 190, 256, 274, 355, 777
Eco130I	CCWWGG	1 cut(s)	518
Eco24I	GRGCYC	2 cut(s)	364, 378
Eco31I	GGTCTC	1 cut(s)	816
Eco57I	CTGAAG	1 cut(s)	882
Eco88I	CYCGRG	2 cut(s)	616, 652
EcoNI	CCTNNNNNAGG	1 cut(s)	215
EcoT14I	CCWWGG	1 cut(s)	518
EcoT38I	GRGCYC	2 cut(s)	364, 378
ErhI	CCWWGG	1 cut(s)	518
Esp3I	CGTCTC	1 cut(s)	670
FaeI	CATG	2 cut(s)	368, 649
FatI	CATG	2 cut(s)	364, 645
FauI	CCCGC	1 cut(s)	385
FblI	GTMKAC	1 cut(s)	392
Fnu4HI	GCNGC	1 cut(s)	294
FokI	GGATG	1 cut(s)	75
FriOI	GRGCYC	2 cut(s)	364, 378
Fsp4HI	GCNGC	1 cut(s)	294
FspBI	CTAG	1 cut(s)	519
GluI	GCNGC	1 cut(s)	294
GsaI	CCCAGC	1 cut(s)	134
HaeIII	GGCC	2 cut(s)	83, 221
HapII	CCGG	3 cut(s)	42, 501, 653
HgaI	GACGC	1 cut(s)	160
Hin1I	GRCGYC	1 cut(s)	171
Hin1II	CATG	2 cut(s)	368, 649
HincII	GTYRAC	1 cut(s)	175
HindII	GTYRAC	1 cut(s)	175
HinfI	GANTC	8 cut(s)	22, 156, 436, 493, 634, 757, 764, 858
HpaII	CCGG	3 cut(s)	42, 501, 653
HphI	GGTGA	2 cut(s)	200, 554
Hpy166II	GTNNAC	5 cut(s)	175, 393, 444, 610, 904
Hpy188I	TCNGA	4 cut(s)	35, 337, 857, 929
Hpy188III	TCNNGA	7 cut(s)	110, 142, 319, 734, 751, 761, 814
Hpy8I	GTNNAC	5 cut(s)	175, 393, 444, 610, 904
Hpy99I	CGWCG	4 cut(s)	35, 68, 391, 458
HpyAV	CCTTC	3 cut(s)	342, 679, 811
HpyCH4III	ACNGT	3 cut(s)	253, 397, 664
HpyCH4IV	ACGT	3 cut(s)	389, 582, 729
HpyCH4V	TGCA	2 cut(s)	77, 296
HpyF3I	CTNAG	2 cut(s)	336, 805
HpySE526I	ACGT	3 cut(s)	389, 582, 729
Hsp92I	GRCGYC	1 cut(s)	171
Hsp92II	CATG	2 cut(s)	368, 649
Kzo9I	GATC	7 cut(s)	85, 144, 190, 256, 274, 355, 777
LmnI	GCTCC	1 cut(s)	503
Lsp1109I	GCAGC	1 cut(s)	280
LweI	GCATC	1 cut(s)	437
MaeI	CTAG	1 cut(s)	519
MaeII	ACGT	3 cut(s)	389, 582, 729
MaeIII	GTNAC	1 cut(s)	800
MalI	GATC	7 cut(s)	87, 146, 192, 258, 276, 357, 779
MboI	GATC	7 cut(s)	85, 144, 190, 256, 274, 355, 777
MboII	GAAGA	7 cut(s)	394, 457, 709, 712, 733, 749, 766
MfeI	CAATTG	1 cut(s)	266
MhlI	GDGCHC	2 cut(s)	364, 378
MluCI	AATT	5 cut(s)	266, 297, 460, 528, 678
MlyI	GAGTC	2 cut(s)	773, 867
MmeI	TCCRAC	2 cut(s)	13, 116
MnlI	CCTC	7 cut(s)	71, 418, 525, 758, 832, 859, 923
MseI	TTAA	5 cut(s)	216, 300, 567, 600, 626
MslI	CAYNNNNRTG	1 cut(s)	899
MspI	CCGG	3 cut(s)	42, 501, 653
MspR9I	CCNGG	3 cut(s)	501, 653, 654
MunI	CAATTG	1 cut(s)	266
MvnI	CGCG	1 cut(s)	380
NciI	CCSGG	3 cut(s)	501, 653, 654
NdeII	GATC	7 cut(s)	85, 144, 190, 256, 274, 355, 777
NlaIII	CATG	2 cut(s)	368, 649
NlaIV	GGNNCC	2 cut(s)	505, 774
OliI	CACNNNNGTG	1 cut(s)	899
PcsI	WCGNNNNNNNCGW	1 cut(s)	437
PfeI	GAWTC	6 cut(s)	22, 156, 436, 493, 634, 757
PkrI	GCNGC	1 cut(s)	295
Ple19I	CGATCG	1 cut(s)	358
PleI	GAGTC	2 cut(s)	772, 866
PpsI	GAGTC	2 cut(s)	772, 866
PspFI	CCCAGC	1 cut(s)	130
PspN4I	GGNNCC	2 cut(s)	505, 774
PvuI	CGATCG	1 cut(s)	358
RsaI	GTAC	4 cut(s)	443, 589, 641, 911
RsaNI	GTAC	4 cut(s)	442, 588, 640, 910
RseI	CAYNNNNRTG	1 cut(s)	899
SaqAI	TTAA	5 cut(s)	216, 300, 567, 600, 626
SatI	GCNGC	1 cut(s)	294
Sau3AI	GATC	7 cut(s)	85, 144, 190, 256, 274, 355, 777
SchI	GAGTC	2 cut(s)	773, 867
ScrFI	CCNGG	3 cut(s)	501, 653, 654
SduI	GDGCHC	2 cut(s)	364, 378
SfaNI	GCATC	1 cut(s)	437
SmaI	CCCGGG	1 cut(s)	654
SmiMI	CAYNNNNRTG	1 cut(s)	899
SmlI	CTYRAG	2 cut(s)	716, 749
SmoI	CTYRAG	2 cut(s)	716, 749
Sse9I	AATT	5 cut(s)	266, 297, 460, 528, 678
SsiI	CCGC	1 cut(s)	378
SspMI	CTAG	1 cut(s)	519
StyD4I	CCNGG	3 cut(s)	499, 651, 652
StyI	CCWWGG	1 cut(s)	518
TaaI	ACNGT	3 cut(s)	253, 397, 664
TaiI	ACGT	3 cut(s)	392, 585, 732
TaqI	TCGA	7 cut(s)	66, 109, 150, 354, 358, 843, 861
TasI	AATT	5 cut(s)	266, 297, 460, 528, 678
TatI	WGTACW	1 cut(s)	639
TfiI	GAWTC	6 cut(s)	22, 156, 436, 493, 634, 757
Tru1I	TTAA	5 cut(s)	216, 300, 567, 600, 626
Tru9I	TTAA	5 cut(s)	216, 300, 567, 600, 626
TscAI	CASTG	5 cut(s)	79, 258, 514, 813, 906
TseI	GCWGC	1 cut(s)	293
TspDTI	ATGAA	1 cut(s)	37
TspGWI	ACGGA	1 cut(s)	429
TspMI	CCCGGG	1 cut(s)	652
TspRI	CASTG	5 cut(s)	79, 258, 514, 813, 906
XagI	CCTNNNNNAGG	1 cut(s)	215
XmaI	CCCGGG	1 cut(s)	652
XmaJI	CCTAGG	1 cut(s)	518
XmiI	GTMKAC	1 cut(s)	392
XspI	CTAG	1 cut(s)	519

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.