Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0005597

Physical Location & Seq

Genomic Coordinates Reverse (-)

49528607 .. 49530598

Gene Structure 1992 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014221

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGCGCAAACCGAGTCCAAGATTCTCTTCATCGGAGGCACTGGCTACATTGGTAAGTTCATAGTCGAGGCCAGCGCCAAGGCCGGCCACCCCACCTTCGTTCTCGTCCGGGAGCCCACTCTCTCCAACCCGGCCAAGTCTAAAGTCATCGACAGCTTCAAGGCAATCGGCGTCAATTTCGTCGTGGGTGATCTGTACGACCACGAGAGCCTTGTGAAGGCGATTAAGCAAGTCGATGTGGTGATTTCGACGGTGGGTCACGCGCAGTTGGCTGATCAAGGCAAGATCATCGCCGCCATTAAAGAAGCCGGCAATGTCAAGAGGTTTTTCCCTTCAGAGTTTGGAAACGACGTGGATCGAGTCCACGCTGTGGAGCCAGCAAAGACGGCGTTCGCTACGAAAGCCAAGGTCCGCAGAGATGTTGAGGCGGCCGGGATTCCCTACACTTATGTGTCATCAAACTTCTTTGCTGGTTACTTCTTGCCCAATCTGAACCAGCCCGGAGCTACTGCTCCTCCCAGGGACAAAGTCGTCATTTTGGGTGATGGCAACCCCAAAGCAATCTTTAACAAGGAAGAGGATATTGGTACCTATACCATTAAGGCTGTGGATGACCCAAGAACATTGAACAAGATCCTCTACATCCGGCCACCTGCCAACACCTTCTCCTTCAACGAACTTGTGGCTCTTTGGGAGAAGAAGATTGGAAAAACCCTTGAGAAGGTCTATGTCCCGGAGGAGCAACTACTCAAAAACATTCAAGAGGCTGCGGTTCCAATCAATGTGATACTGGCAATCGGTCACTCAGTTTTTGTGAAAGGAGACCACACTAACTTTGAGATCGATCCCTCATTTGGAGTGGAAGCTACTGCTCTTTACCCTGATGTCAAATACACTACTGTGGATGAGTACCTCTCCCAGTTCGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009806 GO:0009807 GO:0009987 GO:0010035 GO:0010038 GO:0016491 GO:0016651 GO:0019438 GO:0019748 GO:0042221 GO:0044237 GO:0044249 GO:0044550 GO:0046686 GO:0050664 GO:0050896 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NmrA

Protein Analysis

310

Amino Acids

33.8

Weight (kDa)

6.33

Isoelectric Point (pI)

25.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NmrA	PF05368	5 - 305	7.7e-100	NmrA-like family
Epimerase	PF01370	8 - 88	1.4e-08	NAD dependent epimerase/dehydratase family
NAD_binding_10	PF13460	12 - 153	5.6e-14	NAD(P)H-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005597)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39230
fragaria_vesca	FvH4_2g09110 FvH4_2g09120
malus_domestica	MD10G1073200.v1.1 MD10G1073500.v1.1
prunus_persica	Prupe.8G094500_v2.0.a1
pyrus_communis	pycom10g05770 pycom10g05780
rosa_chinensis	RchiOBHm_Chr6g0265001 RchiOBHm_Chr6g0265011
rosa_laevigata	RLG00000014216 RLG00000014221 RLG00000014224
rosa_multiflora	Rmu_sc0000546.1_g000080 Rmu_sc0002934.1_g000023
rosa_roxburghii	Rroxscaffold_175G00432080 Rroxscaffold_175G00432090 Rroxscaffold_7G00203100 Rroxscaffold_7G00203110
rosa_rugosa	Rorug06G0013800 Rorug06G0013900
rosa_samantha	Rh6AG136100 Rh6BG132900 Rh6BG133100 Rh6DG118700 Rh6DG118900
rosa_wichuraiana	Rw6G011720 Rw6G011730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	661
AasI	GACNNNNNNGTC	1 cut(s)	530
Acc36I	ACCTGC	1 cut(s)	661
Acc65I	GGTACC	1 cut(s)	587
AccB1I	GGYRCC	1 cut(s)	587
AccB7I	CCANNNNNTGG	1 cut(s)	370
AccII	CGCG	1 cut(s)	263
AciI	CCGC	4 cut(s)	294, 412, 428, 770
AclWI	GGATC	3 cut(s)	363, 628, 839
AcoI	YGGCCR	4 cut(s)	85, 132, 429, 647
AcuI	CTGAAG	1 cut(s)	318
AcyI	GRCGYC	1 cut(s)	171
AdeI	CACNNNGTG	1 cut(s)	370
AfaI	GTAC	3 cut(s)	197, 589, 911
AfiI	CCNNNNNNNGG	4 cut(s)	217, 370, 721, 854
AgsI	TTSAA	4 cut(s)	160, 628, 673, 761
AhdI	GACNNNNNGTC	1 cut(s)	255
AjiI	CACGTC	1 cut(s)	352
AjnI	CCWGG	1 cut(s)	518
AjuI	GAANNNNNNNTTGG	4 cut(s)	11, 43, 567, 599
AleI	CACNNNNGTG	2 cut(s)	449, 899
AluBI	AGCT	3 cut(s)	156, 506, 866
AluI	AGCT	3 cut(s)	156, 506, 866
Alw26I	GTCTC	1 cut(s)	816
AlwI	GGATC	3 cut(s)	363, 628, 839
AoxI	GGCC	6 cut(s)	69, 81, 85, 132, 429, 647
ApeKI	GCWGC	1 cut(s)	767
Asp718I	GGTACC	1 cut(s)	587
AspLEI	GCGC	3 cut(s)	7, 77, 265
AspS9I	GGNCC	1 cut(s)	409
AsuC2I	CCSGG	5 cut(s)	110, 131, 433, 501, 734
AsuHPI	GGTGA	3 cut(s)	200, 253, 554
AvaII	GGWCC	1 cut(s)	409
BanI	GGYRCC	1 cut(s)	587
BanII	GRGCYC	1 cut(s)	117
BauI	CACGAG	1 cut(s)	203
BbvI	GCAGC	1 cut(s)	754
BccI	CCATC	1 cut(s)	539
BceAI	ACGGC	1 cut(s)	402
BcgI	CGANNNNNNTGC	2 cut(s)	271, 305
BciT130I	CCWGG	1 cut(s)	520
BclI	TGATCA	1 cut(s)	274
BcnI	CCSGG	5 cut(s)	110, 131, 433, 501, 734
BcoDI	GTCTC	1 cut(s)	816
BfoI	RGCGCY	1 cut(s)	78
BfuAI	ACCTGC	1 cut(s)	661
BisI	GCNGC	3 cut(s)	294, 429, 768
BlsI	GCNGC	3 cut(s)	295, 430, 769
Bme1390I	CCNGG	6 cut(s)	110, 131, 433, 501, 520, 734
Bme18I	GGWCC	1 cut(s)	409
BmeRI	GACNNNNNGTC	1 cut(s)	255
BmgBI	CACGTC	1 cut(s)	352
BmgT120I	GGNCC	1 cut(s)	409
BmiI	GGNNCC	4 cut(s)	114, 375, 589, 774
BmrFI	CCNGG	6 cut(s)	110, 131, 433, 501, 520, 734
BmrI	ACTGGG	1 cut(s)	913
BmuI	ACTGGG	1 cut(s)	913
BplI	GAGNNNNNCTC	1 cut(s)	899
BpuEI	CTTGAG	1 cut(s)	737
BpuMI	CCSGG	5 cut(s)	110, 131, 433, 501, 734
Bsa29I	ATCGAT	1 cut(s)	843
BsaHI	GRCGYC	1 cut(s)	171
BsaI	GGTCTC	1 cut(s)	816
BsaJI	CCNNGG	4 cut(s)	78, 405, 518, 519
BsaXI	ACNNNNNCTCC	4 cut(s)	499, 529, 650, 680
Bsc4I	CCNNNNNNNGG	4 cut(s)	217, 370, 721, 854
Bse118I	RCCGGY	2 cut(s)	83, 308
Bse1I	ACTGG	3 cut(s)	46, 795, 919
Bse3DI	GCAATG	1 cut(s)	319
BseBI	CCWGG	1 cut(s)	520
BseCI	ATCGAT	1 cut(s)	843
BseDI	CCNNGG	4 cut(s)	78, 405, 518, 519
BseGI	GGATG	3 cut(s)	616, 642, 910
BseLI	CCNNNNNNNGG	4 cut(s)	217, 370, 721, 854
BseMI	GCAATG	1 cut(s)	319
BseMII	CTCAG	1 cut(s)	819
BseNI	ACTGG	3 cut(s)	46, 795, 919
BseRI	GAGGAG	2 cut(s)	504, 752
BseX3I	CGGCCG	1 cut(s)	429
BseXI	GCAGC	1 cut(s)	754
Bsh1236I	CGCG	1 cut(s)	263
Bsh1285I	CGRYCG	1 cut(s)	432
BshFI	GGCC	6 cut(s)	71, 83, 87, 134, 431, 649
BshNI	GGYRCC	1 cut(s)	587
BshVI	ATCGAT	1 cut(s)	843
BsiEI	CGRYCG	1 cut(s)	432
BsiSI	CCGG	8 cut(s)	84, 109, 131, 309, 432, 501, 646, 734
BslFI	GGGAC	2 cut(s)	536, 716
BslI	CCNNNNNNNGG	4 cut(s)	217, 370, 721, 854
BsmAI	GTCTC	1 cut(s)	816
BsmFI	GGGAC	2 cut(s)	536, 716
BsnI	GGCC	6 cut(s)	71, 83, 87, 134, 431, 649
Bso31I	GGTCTC	1 cut(s)	816
Bsp1286I	GDGCHC	1 cut(s)	117
Bsp143I	GATC	7 cut(s)	190, 274, 285, 355, 633, 840, 844
BspACI	CCGC	4 cut(s)	294, 412, 428, 770
BspANI	GGCC	6 cut(s)	71, 83, 87, 134, 431, 649
BspCNI	CTCAG	1 cut(s)	818
BspDI	ATCGAT	1 cut(s)	843
BspFNI	CGCG	1 cut(s)	263
BspLI	GGNNCC	4 cut(s)	114, 375, 589, 774
BspMI	ACCTGC	1 cut(s)	661
BspPI	GGATC	3 cut(s)	363, 628, 839
BspT107I	GGYRCC	1 cut(s)	587
BspTNI	GGTCTC	1 cut(s)	816
BsrDI	GCAATG	1 cut(s)	319
BsrFI	RCCGGY	2 cut(s)	83, 308
BsrI	ACTGG	3 cut(s)	46, 795, 919
BssAI	RCCGGY	2 cut(s)	83, 308
BssECI	CCNNGG	4 cut(s)	78, 405, 518, 519
BssMI	GATC	7 cut(s)	190, 274, 285, 355, 633, 840, 844
BssNI	GRCGYC	1 cut(s)	171
BssSI	CACGAG	1 cut(s)	203
BssT1I	CCWWGG	2 cut(s)	78, 405
Bst2BI	CACGAG	1 cut(s)	203
Bst2UI	CCWGG	1 cut(s)	520
Bst4CI	ACNGT	2 cut(s)	253, 901
Bst6I	CTCTTC	2 cut(s)	32, 570
BstACI	GRCGYC	1 cut(s)	171
BstC8I	GCNNGC	4 cut(s)	73, 85, 310, 378
BstDEI	CTNAG	1 cut(s)	805
BstENI	CCTNNNNNAGG	2 cut(s)	215, 719
BstF5I	GGATG	3 cut(s)	616, 642, 910
BstFNI	CGCG	1 cut(s)	263
BstH2I	RGCGCY	1 cut(s)	78
BstHHI	GCGC	3 cut(s)	7, 77, 265
BstKTI	GATC	7 cut(s)	193, 277, 288, 358, 636, 843, 847
BstMAI	GTCTC	1 cut(s)	816
BstMBI	GATC	7 cut(s)	190, 274, 285, 355, 633, 840, 844
BstMCI	CGRYCG	1 cut(s)	432
BstMWI	GCNNNNNNNGC	3 cut(s)	269, 386, 401
BstNI	CCWGG	1 cut(s)	520
BstSCI	CCNGG	6 cut(s)	108, 129, 431, 499, 518, 732
BstUI	CGCG	1 cut(s)	263
BstV1I	GCAGC	1 cut(s)	754
BstX2I	RGATCY	1 cut(s)	633
BstYI	RGATCY	1 cut(s)	633
BstZI	CGGCCG	1 cut(s)	429
Bsu15I	ATCGAT	1 cut(s)	843
BsuRI	GGCC	6 cut(s)	71, 83, 87, 134, 431, 649
BsuTUI	ATCGAT	1 cut(s)	843
BtgZI	GCGATG	1 cut(s)	274
BtrI	CACGTC	1 cut(s)	352
BtsCI	GGATG	3 cut(s)	616, 642, 910
BtsIMutI	CAGTG	1 cut(s)	39
BveI	ACCTGC	1 cut(s)	661
Cac8I	GCNNGC	4 cut(s)	73, 85, 310, 378
CfoI	GCGC	3 cut(s)	7, 77, 265
Cfr10I	RCCGGY	2 cut(s)	83, 308
Cfr13I	GGNCC	1 cut(s)	409
ClaI	ATCGAT	1 cut(s)	843
CseI	GACGC	1 cut(s)	160
Csp6I	GTAC	3 cut(s)	196, 588, 910
CviQI	GTAC	3 cut(s)	196, 588, 910
DdeI	CTNAG	1 cut(s)	805
DpnI	GATC	7 cut(s)	192, 276, 287, 357, 635, 842, 846
DpnII	GATC	7 cut(s)	190, 274, 285, 355, 633, 840, 844
DraIII	CACNNNGTG	1 cut(s)	370
DrdI	GACNNNNNNGTC	1 cut(s)	530
DriI	GACNNNNNGTC	1 cut(s)	255
DseDI	GACNNNNNNGTC	1 cut(s)	530
EaeI	YGGCCR	4 cut(s)	85, 132, 429, 647
EagI	CGGCCG	1 cut(s)	429
Eam1104I	CTCTTC	2 cut(s)	32, 570
Eam1105I	GACNNNNNGTC	1 cut(s)	255
EarI	CTCTTC	2 cut(s)	32, 570
EclXI	CGGCCG	1 cut(s)	429
Eco130I	CCWWGG	2 cut(s)	78, 405
Eco24I	GRGCYC	1 cut(s)	117
Eco31I	GGTCTC	1 cut(s)	816
Eco47I	GGWCC	1 cut(s)	409
Eco52I	CGGCCG	1 cut(s)	429
Eco57I	CTGAAG	1 cut(s)	318
EcoNI	CCTNNNNNAGG	2 cut(s)	215, 719
EcoRII	CCWGG	1 cut(s)	518
EcoT14I	CCWWGG	2 cut(s)	78, 405
EcoT38I	GRGCYC	1 cut(s)	117
ErhI	CCWWGG	2 cut(s)	78, 405
FaiI	YATR	4 cut(s)	62, 450, 594, 729
FalI	AAGNNNNNCTT	2 cut(s)	11, 43
FaqI	GGGAC	2 cut(s)	536, 716
FbaI	TGATCA	1 cut(s)	274
Fnu4HI	GCNGC	3 cut(s)	294, 429, 768
FokI	GGATG	3 cut(s)	623, 629, 917
FriOI	GRGCYC	1 cut(s)	117
FseI	GGCCGGCC	1 cut(s)	87
Fsp4HI	GCNGC	3 cut(s)	294, 429, 768
GlaI	GCGC	3 cut(s)	6, 76, 264
GluI	GCNGC	3 cut(s)	294, 429, 768
HaeII	RGCGCY	1 cut(s)	78
HaeIII	GGCC	6 cut(s)	71, 83, 87, 134, 431, 649
HapII	CCGG	8 cut(s)	84, 109, 131, 309, 432, 501, 646, 734
HgaI	GACGC	1 cut(s)	160
HhaI	GCGC	3 cut(s)	7, 77, 265
Hin1I	GRCGYC	1 cut(s)	171
Hin6I	GCGC	3 cut(s)	5, 75, 263
HinP1I	GCGC	3 cut(s)	5, 75, 263
HinfI	GANTC	4 cut(s)	14, 22, 360, 436
HpaII	CCGG	8 cut(s)	84, 109, 131, 309, 432, 501, 646, 734
HphI	GGTGA	3 cut(s)	200, 253, 554
Hpy166II	GTNNAC	1 cut(s)	364
Hpy188I	TCNGA	4 cut(s)	35, 337, 492, 929
Hpy188III	TCNNGA	2 cut(s)	319, 761
Hpy8I	GTNNAC	1 cut(s)	364
Hpy99I	CGWCG	3 cut(s)	185, 253, 353
HpyAV	CCTTC	6 cut(s)	106, 211, 342, 673, 679, 715
HpyCH4III	ACNGT	2 cut(s)	253, 901
HpyCH4IV	ACGT	1 cut(s)	351
HpyF10VI	GCNNNNNNNGC	3 cut(s)	269, 386, 401
HpyF3I	CTNAG	1 cut(s)	805
HpySE526I	ACGT	1 cut(s)	351
Hsp92I	GRCGYC	1 cut(s)	171
HspAI	GCGC	3 cut(s)	5, 75, 263
KpnI	GGTACC	1 cut(s)	591
KroI	GCCGGC	2 cut(s)	83, 308
KroNI	GCCGGC	2 cut(s)	85, 310
Ksp22I	TGATCA	1 cut(s)	274
Kzo9I	GATC	7 cut(s)	190, 274, 285, 355, 633, 840, 844
LmnI	GCTCC	5 cut(s)	112, 373, 503, 517, 739
Lsp1109I	GCAGC	1 cut(s)	754
MaeII	ACGT	1 cut(s)	351
MaeIII	GTNAC	3 cut(s)	257, 473, 800
MalI	GATC	7 cut(s)	192, 276, 287, 357, 635, 842, 846
MboI	GATC	7 cut(s)	190, 274, 285, 355, 633, 840, 844
MboII	GAAGA	4 cut(s)	19, 587, 709, 712
MflI	RGATCY	1 cut(s)	633
MhlI	GDGCHC	1 cut(s)	117
MluCI	AATT	1 cut(s)	175
MlyI	GAGTC	2 cut(s)	23, 369
MmeI	TCCRAC	1 cut(s)	150
MroNI	GCCGGC	2 cut(s)	83, 308
MseI	TTAA	4 cut(s)	225, 300, 567, 600
MslI	CAYNNNNRTG	2 cut(s)	449, 899
MspI	CCGG	8 cut(s)	84, 109, 131, 309, 432, 501, 646, 734
MspR9I	CCNGG	6 cut(s)	110, 131, 433, 501, 520, 734
MvaI	CCWGG	1 cut(s)	520
MvnI	CGCG	1 cut(s)	263
MwoI	GCNNNNNNNGC	3 cut(s)	269, 386, 401
NaeI	GCCGGC	2 cut(s)	85, 310
NciI	CCSGG	5 cut(s)	110, 131, 433, 501, 734
NdeII	GATC	7 cut(s)	190, 274, 285, 355, 633, 840, 844
NgoMIV	GCCGGC	2 cut(s)	83, 308
NlaIV	GGNNCC	4 cut(s)	114, 375, 589, 774
NmuCI	GTSAC	2 cut(s)	257, 800
OliI	CACNNNNGTG	2 cut(s)	449, 899
PaqCI	CACCTGC	1 cut(s)	661
PasI	CCCWGGG	1 cut(s)	519
PdiI	GCCGGC	2 cut(s)	85, 310
PfeI	GAWTC	2 cut(s)	22, 436
PflFI	GACNNNGTC	1 cut(s)	527
PflMI	CCANNNNNTGG	1 cut(s)	370
PfoI	TCCNGGA	2 cut(s)	108, 732
PkrI	GCNGC	3 cut(s)	295, 430, 769
PleI	GAGTC	2 cut(s)	22, 368
PpsI	GAGTC	2 cut(s)	22, 368
Psp6I	CCWGG	1 cut(s)	518
PspGI	CCWGG	1 cut(s)	518
PspN4I	GGNNCC	4 cut(s)	114, 375, 589, 774
PspPI	GGNCC	1 cut(s)	409
PsuI	RGATCY	1 cut(s)	633
PsyI	GACNNNGTC	1 cut(s)	527
RigI	GGCCGGCC	1 cut(s)	87
RsaI	GTAC	3 cut(s)	197, 589, 911
RsaNI	GTAC	3 cut(s)	196, 588, 910
RseI	CAYNNNNRTG	2 cut(s)	449, 899
SaqAI	TTAA	4 cut(s)	225, 300, 567, 600
SatI	GCNGC	3 cut(s)	294, 429, 768
Sau3AI	GATC	7 cut(s)	190, 274, 285, 355, 633, 840, 844
Sau96I	GGNCC	1 cut(s)	409
SchI	GAGTC	2 cut(s)	23, 369
ScrFI	CCNGG	6 cut(s)	110, 131, 433, 501, 520, 734
SduI	GDGCHC	1 cut(s)	117
SinI	GGWCC	1 cut(s)	409
SmiMI	CAYNNNNRTG	2 cut(s)	449, 899
SmlI	CTYRAG	1 cut(s)	716
SmoI	CTYRAG	1 cut(s)	716
Sse9I	AATT	1 cut(s)	175
SsiI	CCGC	4 cut(s)	294, 412, 428, 770
StyD4I	CCNGG	6 cut(s)	108, 129, 431, 499, 518, 732
StyI	CCWWGG	2 cut(s)	78, 405
TaaI	ACNGT	2 cut(s)	253, 901
TaiI	ACGT	1 cut(s)	354
TaqI	TCGA	6 cut(s)	66, 150, 234, 248, 358, 843
TaqII	GACCGA	1 cut(s)	788
TasI	AATT	1 cut(s)	175
TauI	GCSGC	2 cut(s)	296, 431
TfiI	GAWTC	2 cut(s)	22, 436
Tru1I	TTAA	4 cut(s)	225, 300, 567, 600
Tru9I	TTAA	4 cut(s)	225, 300, 567, 600
TscAI	CASTG	1 cut(s)	46
TseFI	GTSAC	2 cut(s)	257, 800
TseI	GCWGC	1 cut(s)	767
Tsp45I	GTSAC	2 cut(s)	257, 800
TspDTI	ATGAA	2 cut(s)	19, 49
TspRI	CASTG	1 cut(s)	46
Tth111I	GACNNNGTC	1 cut(s)	527
Van91I	CCANNNNNTGG	1 cut(s)	370
VpaK11BI	GGWCC	1 cut(s)	409
XagI	CCTNNNNNAGG	2 cut(s)	215, 719
XcmI	CCANNNNNNNNNTGG	1 cut(s)	604

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.