Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0005597

Physical Location & Seq

Genomic Coordinates Forward (+)

20781064 .. 20784583

Gene Structure 3520 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG132900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGTTCTCAGAACCAGCTCCACGTCTATTTCTTCTTCCCTGTCCTTTGCAACGCTCTCTGTTTCAAACCAACTCCAGAATCTCCTTCTCATTTTCATTCTCATTCTCATTCCCTACTCCAATGGCAGAAACCAAATCCAAGATTCTCATTGTCGGAAGCACCGGCTTCATTGGAAAACACCTCGTCGAAGCCAGCGCGAAAGCCGGTCACCCAACCTTTGCTCTGGTTCGAGAACCCACTCTCTCTAACCCAGCCAAGTCCAAGATCATCCAAAGTTTCAAGGCTTTGGGCGTCAACTTCGTCTTGGGTGATCTCTATGACCACGATAGCCTTGTGAAGGCGATAAAACAGGTCGATGTGGTGATTTCAACAGTGTACCACTCCCAATTAGCAGATCAACGCAAGATTATAACTGCAATTAAAGAAGCTGGCAATGTCAAGAGATTTTTCCCTTCCGAGTTTGGCAACGATGTCGATCGAGCTCATGCTGTTGAGCCAGCGAAAACAACGTATGCTGTGAAAGCTGACTTTCGCAGAGAAGTTGAGGCATCGGGGATTCCGTACACCTATATCGTTGGCAATTTCTTTTCCGGCTACTTCTTGCCCACTTTGAATCAACCTGGAGCCACTGCCCCTCCAAGGGATAAAATCGTGGTTTTAGGGGATGGAAACACCAAAGCTATCTTTAACAAGGAACAGGACGTTAGTACCTATACTATTAAGGCTGTGGATGATCCGAGAACCTTAAACAAGATCCTCTACATCATGCCCCCGGGCAACACCGTCTCCTTCAACGAAATTGTATCTCTCTGGGAGAAGAAGATTGGCAAGACCCTTGAGAAGATACATGTTCCGGAAGAACAGCTCCTCAAGAAGATTCAAGAGGCTGTGGAACCAATCAAATCGCTACTGTGTTATGGTTACTCAGTCTTCGTGAAGGGAGACCATACTAACTTTGAGGTCGAGCCCACATTCGGAGTAGAAGCTACTGAACTTTACCCTGATGTCAAATACACTTCAGTGGACGAGTACCTCAACCAGTTTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009806 GO:0009807 GO:0009987 GO:0010035 GO:0010038 GO:0016491 GO:0016651 GO:0019438 GO:0019748 GO:0042221 GO:0044237 GO:0044249 GO:0044550 GO:0046686 GO:0050664 GO:0050896 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NmrA

Protein Analysis

349

Amino Acids

38.9

Weight (kDa)

7.71

Isoelectric Point (pI)

24.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NmrA	PF05368	44 - 345	3.8e-89	NmrA-like family
Epimerase	PF01370	48 - 126	2.1e-10	NAD dependent epimerase/dehydratase family
GDP_Man_Dehyd	PF16363	49 - 127	2.6e-07	GDP-mannose 4,6 dehydratase
NAD_binding_10	PF13460	52 - 191	7.2e-15	NAD(P)H-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005597)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39230
fragaria_vesca	FvH4_2g09110 FvH4_2g09120
malus_domestica	MD10G1073200.v1.1 MD10G1073500.v1.1
prunus_persica	Prupe.8G094500_v2.0.a1
pyrus_communis	pycom10g05770 pycom10g05780
rosa_chinensis	RchiOBHm_Chr6g0265001 RchiOBHm_Chr6g0265011
rosa_laevigata	RLG00000014216 RLG00000014221 RLG00000014224
rosa_multiflora	Rmu_sc0000546.1_g000080 Rmu_sc0002934.1_g000023
rosa_roxburghii	Rroxscaffold_175G00432080 Rroxscaffold_175G00432090 Rroxscaffold_7G00203100 Rroxscaffold_7G00203110
rosa_rugosa	Rorug06G0013800 Rorug06G0013900
rosa_samantha	Rh6AG136100 Rh6BG132900 Rh6BG133100 Rh6DG118700 Rh6DG118900
rosa_wichuraiana	Rw6G011720 Rw6G011730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	410
AccII	CGCG	1 cut(s)	197
AccIII	TCCGGA	1 cut(s)	853
AclWI	GGATC	2 cut(s)	728, 748
AcuI	CTGAAG	1 cut(s)	1002
AcyI	GRCGYC	1 cut(s)	291
AfaI	GTAC	4 cut(s)	377, 563, 709, 1031
AfiI	CCNNNNNNNGG	4 cut(s)	337, 639, 640, 974
AflIII	ACRYGT	1 cut(s)	847
AgsI	TTSAA	6 cut(s)	65, 280, 369, 613, 793, 881
AjiI	CACGTC	1 cut(s)	23
AjnI	CCWGG	1 cut(s)	619
AleI	CACNNNNGTG	1 cut(s)	1019
AluBI	AGCT	7 cut(s)	17, 428, 482, 524, 680, 865, 986
AluI	AGCT	7 cut(s)	17, 428, 482, 524, 680, 865, 986
Alw21I	GWGCWC	1 cut(s)	484
Alw26I	GTCTC	2 cut(s)	790, 936
AlwI	GGATC	2 cut(s)	728, 748
Ama87I	CYCGRG	1 cut(s)	772
Aor13HI	TCCGGA	1 cut(s)	853
AspLEI	GCGC	1 cut(s)	197
AsuC2I	CCSGG	2 cut(s)	773, 774
AsuHPI	GGTGA	3 cut(s)	200, 320, 373
AvaI	CYCGRG	1 cut(s)	772
BaeI	ACNNNNGTAYC	2 cut(s)	691, 724
BanII	GRGCYC	2 cut(s)	484, 969
BbsI	GAAGAC	1 cut(s)	922
Bbv12I	GWGCWC	1 cut(s)	484
BccI	CCATC	1 cut(s)	659
BcgI	CGANNNNNNTGC	2 cut(s)	454, 488
BciT130I	CCWGG	1 cut(s)	621
BcnI	CCSGG	2 cut(s)	773, 774
BcoDI	GTCTC	2 cut(s)	790, 936
Bme1390I	CCNGG	3 cut(s)	621, 773, 774
BmeT110I	CYCGRG	1 cut(s)	772
BmgBI	CACGTC	1 cut(s)	23
BmiI	GGNNCC	2 cut(s)	625, 894
BmrFI	CCNGG	3 cut(s)	621, 773, 774
BmsI	GCATC	1 cut(s)	557
BpiI	GAAGAC	1 cut(s)	922
BpmI	CTGGAG	2 cut(s)	58, 642
BpuEI	CTTGAG	2 cut(s)	854, 857
BpuMI	CCSGG	2 cut(s)	773, 774
BsaBI	GATNNNNATC	1 cut(s)	474
BsaHI	GRCGYC	1 cut(s)	291
BsaI	GGTCTC	1 cut(s)	936
BsaJI	CCNNGG	3 cut(s)	638, 771, 772
BsaWI	WCCGGW	1 cut(s)	853
BsaXI	ACNNNNNCTCC	4 cut(s)	619, 649, 770, 800
Bsc4I	CCNNNNNNNGG	4 cut(s)	337, 639, 640, 974
Bse118I	RCCGGY	2 cut(s)	161, 203
Bse1I	ACTGG	1 cut(s)	1039
Bse3DI	GCAATG	1 cut(s)	439
Bse8I	GATNNNNATC	1 cut(s)	474
BseAI	TCCGGA	1 cut(s)	853
BseBI	CCWGG	1 cut(s)	621
BseDI	CCNNGG	3 cut(s)	638, 771, 772
BseGI	GGATG	3 cut(s)	267, 670, 736
BseJI	GATNNNNATC	1 cut(s)	474
BseLI	CCNNNNNNNGG	4 cut(s)	337, 639, 640, 974
BseMI	GCAATG	1 cut(s)	439
BseMII	CTCAG	2 cut(s)	21, 939
BseNI	ACTGG	1 cut(s)	1039
BseRI	GAGGAG	1 cut(s)	857
BseYI	CCCAGC	1 cut(s)	250
Bsh1236I	CGCG	1 cut(s)	197
Bsh1285I	CGRYCG	1 cut(s)	478
BsiEI	CGRYCG	1 cut(s)	478
BsiHKAI	GWGCWC	1 cut(s)	484
BsiHKCI	CYCGRG	1 cut(s)	772
BsiSI	CCGG	5 cut(s)	162, 204, 591, 773, 854
BslI	CCNNNNNNNGG	4 cut(s)	337, 639, 640, 974
BsmAI	GTCTC	2 cut(s)	790, 936
BsmBI	CGTCTC	1 cut(s)	790
Bso31I	GGTCTC	1 cut(s)	936
BsoBI	CYCGRG	1 cut(s)	772
Bsp1286I	GDGCHC	2 cut(s)	484, 969
Bsp13I	TCCGGA	1 cut(s)	853
Bsp143I	GATC	6 cut(s)	264, 310, 394, 475, 733, 753
BspCNI	CTCAG	2 cut(s)	20, 938
BspEI	TCCGGA	1 cut(s)	853
BspFNI	CGCG	1 cut(s)	197
BspLI	GGNNCC	2 cut(s)	625, 894
BspPI	GGATC	2 cut(s)	728, 748
BspTNI	GGTCTC	1 cut(s)	936
BsrDI	GCAATG	1 cut(s)	439
BsrFI	RCCGGY	2 cut(s)	161, 203
BsrI	ACTGG	1 cut(s)	1039
BssAI	RCCGGY	2 cut(s)	161, 203
BssECI	CCNNGG	3 cut(s)	638, 771, 772
BssMI	GATC	6 cut(s)	264, 310, 394, 475, 733, 753
BssNI	GRCGYC	1 cut(s)	291
BssT1I	CCWWGG	1 cut(s)	638
Bst2UI	CCWGG	1 cut(s)	621
Bst4CI	ACNGT	3 cut(s)	373, 784, 912
BstACI	GRCGYC	1 cut(s)	291
BstC8I	GCNNGC	3 cut(s)	193, 430, 498
BstDEI	CTNAG	2 cut(s)	7, 925
BstEII	GGTNACC	1 cut(s)	206
BstENI	CCTNNNNNAGG	1 cut(s)	335
BstF5I	GGATG	3 cut(s)	267, 670, 736
BstFNI	CGCG	1 cut(s)	197
BstHHI	GCGC	1 cut(s)	197
BstKTI	GATC	6 cut(s)	267, 313, 397, 478, 736, 756
BstMAI	GTCTC	2 cut(s)	790, 936
BstMBI	GATC	6 cut(s)	264, 310, 394, 475, 733, 753
BstMCI	CGRYCG	1 cut(s)	478
BstMWI	GCNNNNNNNGC	1 cut(s)	521
BstNI	CCWGG	1 cut(s)	621
BstNSI	RCATGY	1 cut(s)	851
BstPI	GGTNACC	1 cut(s)	206
BstSCI	CCNGG	3 cut(s)	619, 771, 772
BstUI	CGCG	1 cut(s)	197
BstV2I	GAAGAC	1 cut(s)	922
BstX2I	RGATCY	1 cut(s)	753
BstYI	RGATCY	1 cut(s)	753
BtrI	CACGTC	1 cut(s)	23
BtsCI	GGATG	3 cut(s)	267, 670, 736
BtsI	GCAGTG	1 cut(s)	627
BtsIMutI	CAGTG	3 cut(s)	378, 627, 1026
Cac8I	GCNNGC	3 cut(s)	193, 430, 498
CfoI	GCGC	1 cut(s)	197
Cfr10I	RCCGGY	2 cut(s)	161, 203
Cfr9I	CCCGGG	1 cut(s)	772
CseI	GACGC	1 cut(s)	280
Csp6I	GTAC	4 cut(s)	376, 562, 708, 1030
CviAII	CATG	3 cut(s)	485, 766, 848
CviQI	GTAC	4 cut(s)	376, 562, 708, 1030
DdeI	CTNAG	2 cut(s)	7, 925
DpnI	GATC	6 cut(s)	266, 312, 396, 477, 735, 755
DpnII	GATC	6 cut(s)	264, 310, 394, 475, 733, 753
Ecl136II	GAGCTC	1 cut(s)	482
Eco130I	CCWWGG	1 cut(s)	638
Eco24I	GRGCYC	2 cut(s)	484, 969
Eco31I	GGTCTC	1 cut(s)	936
Eco53kI	GAGCTC	1 cut(s)	482
Eco57I	CTGAAG	1 cut(s)	1002
Eco88I	CYCGRG	1 cut(s)	772
Eco91I	GGTNACC	1 cut(s)	206
EcoICRI	GAGCTC	1 cut(s)	482
EcoNI	CCTNNNNNAGG	1 cut(s)	335
EcoO65I	GGTNACC	1 cut(s)	206
EcoRII	CCWGG	1 cut(s)	619
EcoT14I	CCWWGG	1 cut(s)	638
EcoT38I	GRGCYC	2 cut(s)	484, 969
ErhI	CCWWGG	1 cut(s)	638
Esp3I	CGTCTC	1 cut(s)	790
FaeI	CATG	3 cut(s)	488, 769, 851
FatI	CATG	3 cut(s)	484, 765, 847
FokI	GGATG	3 cut(s)	254, 677, 743
FriOI	GRGCYC	2 cut(s)	484, 969
GlaI	GCGC	1 cut(s)	196
GsaI	CCCAGC	1 cut(s)	254
GsuI	CTGGAG	2 cut(s)	58, 642
HapII	CCGG	5 cut(s)	162, 204, 591, 773, 854
HgaI	GACGC	1 cut(s)	280
HhaI	GCGC	1 cut(s)	197
Hin1I	GRCGYC	1 cut(s)	291
Hin1II	CATG	3 cut(s)	488, 769, 851
Hin6I	GCGC	1 cut(s)	195
HinP1I	GCGC	1 cut(s)	195
HincII	GTYRAC	1 cut(s)	295
HindII	GTYRAC	1 cut(s)	295
HinfI	GANTC	5 cut(s)	78, 142, 556, 613, 877
HpaII	CCGG	5 cut(s)	162, 204, 591, 773, 854
HphI	GGTGA	3 cut(s)	200, 320, 373
Hpy166II	GTNNAC	4 cut(s)	295, 376, 564, 1024
Hpy188I	TCNGA	5 cut(s)	10, 155, 457, 738, 977
Hpy188III	TCNNGA	7 cut(s)	75, 230, 439, 854, 871, 881, 934
Hpy8I	GTNNAC	4 cut(s)	295, 376, 564, 1024
Hpy99I	CGWCG	1 cut(s)	188
HpyAV	CCTTC	5 cut(s)	94, 331, 462, 799, 931
HpyCH4III	ACNGT	3 cut(s)	373, 784, 912
HpyCH4IV	ACGT	3 cut(s)	22, 509, 702
HpyCH4V	TGCA	2 cut(s)	49, 416
HpyF10VI	GCNNNNNNNGC	1 cut(s)	521
HpyF3I	CTNAG	2 cut(s)	7, 925
HpySE526I	ACGT	3 cut(s)	22, 509, 702
Hsp92I	GRCGYC	1 cut(s)	291
Hsp92II	CATG	3 cut(s)	488, 769, 851
HspAI	GCGC	1 cut(s)	195
Kpn2I	TCCGGA	1 cut(s)	853
Kzo9I	GATC	6 cut(s)	264, 310, 394, 475, 733, 753
LmnI	GCTCC	3 cut(s)	22, 623, 870
LweI	GCATC	1 cut(s)	557
MaeII	ACGT	3 cut(s)	22, 509, 702
MaeIII	GTNAC	2 cut(s)	206, 920
MalI	GATC	6 cut(s)	266, 312, 396, 477, 735, 755
MboI	GATC	6 cut(s)	264, 310, 394, 475, 733, 753
MboII	GAAGA	8 cut(s)	23, 26, 829, 832, 853, 869, 886, 922
MflI	RGATCY	1 cut(s)	753
MhlI	GDGCHC	2 cut(s)	484, 969
MluCI	AATT	4 cut(s)	386, 417, 580, 798
MmeI	TCCRAC	1 cut(s)	133
MnlI	CCTC	8 cut(s)	191, 538, 645, 767, 877, 878, 952, 1043
MroI	TCCGGA	1 cut(s)	853
MseI	TTAA	4 cut(s)	420, 687, 720, 746
MslI	CAYNNNNRTG	1 cut(s)	1019
MspI	CCGG	5 cut(s)	162, 204, 591, 773, 854
MspR9I	CCNGG	3 cut(s)	621, 773, 774
MvaI	CCWGG	1 cut(s)	621
MvnI	CGCG	1 cut(s)	197
MwoI	GCNNNNNNNGC	1 cut(s)	521
NciI	CCSGG	2 cut(s)	773, 774
NdeII	GATC	6 cut(s)	264, 310, 394, 475, 733, 753
NlaIII	CATG	3 cut(s)	488, 769, 851
NlaIV	GGNNCC	2 cut(s)	625, 894
NmuCI	GTSAC	1 cut(s)	206
NspI	RCATGY	1 cut(s)	851
OliI	CACNNNNGTG	1 cut(s)	1019
PciI	ACATGT	1 cut(s)	847
PcsI	WCGNNNNNNNCGW	1 cut(s)	557
PfeI	GAWTC	5 cut(s)	78, 142, 556, 613, 877
Ple19I	CGATCG	1 cut(s)	478
PscI	ACATGT	1 cut(s)	847
PsiI	TTATAA	1 cut(s)	410
Psp124BI	GAGCTC	1 cut(s)	484
Psp6I	CCWGG	1 cut(s)	619
PspEI	GGTNACC	1 cut(s)	206
PspFI	CCCAGC	1 cut(s)	250
PspGI	CCWGG	1 cut(s)	619
PspN4I	GGNNCC	2 cut(s)	625, 894
PsuI	RGATCY	1 cut(s)	753
PvuI	CGATCG	1 cut(s)	478
RsaI	GTAC	4 cut(s)	377, 563, 709, 1031
RsaNI	GTAC	4 cut(s)	376, 562, 708, 1030
RseI	CAYNNNNRTG	1 cut(s)	1019
SacI	GAGCTC	1 cut(s)	484
SaqAI	TTAA	4 cut(s)	420, 687, 720, 746
Sau3AI	GATC	6 cut(s)	264, 310, 394, 475, 733, 753
ScrFI	CCNGG	3 cut(s)	621, 773, 774
SduI	GDGCHC	2 cut(s)	484, 969
SfaNI	GCATC	1 cut(s)	557
SmaI	CCCGGG	1 cut(s)	774
SmiMI	CAYNNNNRTG	1 cut(s)	1019
SmlI	CTYRAG	2 cut(s)	836, 869
SmoI	CTYRAG	2 cut(s)	836, 869
Sse9I	AATT	4 cut(s)	386, 417, 580, 798
SstI	GAGCTC	1 cut(s)	484
StyD4I	CCNGG	3 cut(s)	619, 771, 772
StyI	CCWWGG	1 cut(s)	638
TaaI	ACNGT	3 cut(s)	373, 784, 912
TaiI	ACGT	3 cut(s)	25, 512, 705
TaqI	TCGA	6 cut(s)	186, 229, 354, 474, 478, 963
TasI	AATT	4 cut(s)	386, 417, 580, 798
TfiI	GAWTC	5 cut(s)	78, 142, 556, 613, 877
Tru1I	TTAA	4 cut(s)	420, 687, 720, 746
Tru9I	TTAA	4 cut(s)	420, 687, 720, 746
TscAI	CASTG	3 cut(s)	378, 634, 1026
TseFI	GTSAC	1 cut(s)	206
Tsp45I	GTSAC	1 cut(s)	206
TspDTI	ATGAA	2 cut(s)	84, 157
TspGWI	ACGGA	1 cut(s)	549
TspMI	CCCGGG	1 cut(s)	772
TspRI	CASTG	3 cut(s)	378, 634, 1026
XagI	CCTNNNNNAGG	1 cut(s)	335
XceI	RCATGY	1 cut(s)	851
XmaI	CCCGGG	1 cut(s)	772

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.