Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000546.1

Orthogroup ID

OG0005597

Physical Location & Seq

Genomic Coordinates Forward (+)

364931 .. 367408

Gene Structure 2478 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000546.1_g000080.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

atggcagaaaccaaatccaagattctcattgtcggaagcaccggcttcattggaaaacacctcgtcgaagccagcgcgaaagccggtcacccaacctttgctctggttcgagaacccactctctctaacccagccaagtccaagatcatccaaagtttcaaggctttgggcgtcaacttcgtcttgagatttttcccttccgagtttggcaacgatgtcgatcgagctcatgctgttgagccagcgaagacgacgtatgctgtgaaagctgactttcgcagggaagttgaggcatcagggattccgtacacctatatcgtcgggaatttcttctctggatacttcttgcccactttgaatcagcctggagccactgcccctccaagggataaaatcgtcgttttaggggatggaaacaccaaagctatctttaacaaggaacaggacgttagtacctatactattaaggctgtggatgacccgagaaccttaaacaagatcctctacatcatgcccccaggcaacaccgtctccttcaacgaaatcgtatctctctgggagaagaagattggcaagacccttgagaagatacatgttccggaagaacagctcctcaagaagattcaagaggctgtggaaccaatcaaatcgctactgtgttatggttactcagtcttcgtgaagggagaccatactaactttgaggtcgagcccacattcggagtagaagctactgaactttaccctgatgtcaaatacacttcagtggacgagtacctcaaccagtttgtctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009806 GO:0009807 GO:0009987 GO:0010035 GO:0010038 GO:0016491 GO:0016651 GO:0019438 GO:0019748 GO:0042221 GO:0044237 GO:0044249 GO:0044550 GO:0046686 GO:0050664 GO:0050896 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NmrA

Protein Analysis

264

Amino Acids

29.33

Weight (kDa)

6.54

Isoelectric Point (pI)

21.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005597)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39230
fragaria_vesca	FvH4_2g09110 FvH4_2g09120
malus_domestica	MD10G1073200.v1.1 MD10G1073500.v1.1
prunus_persica	Prupe.8G094500_v2.0.a1
pyrus_communis	pycom10g05770 pycom10g05780
rosa_chinensis	RchiOBHm_Chr6g0265001 RchiOBHm_Chr6g0265011
rosa_laevigata	RLG00000014216 RLG00000014221 RLG00000014224
rosa_multiflora	Rmu_sc0000546.1_g000080 Rmu_sc0002934.1_g000023
rosa_roxburghii	Rroxscaffold_175G00432080 Rroxscaffold_175G00432090 Rroxscaffold_7G00203100 Rroxscaffold_7G00203110
rosa_rugosa	Rorug06G0013800 Rorug06G0013900
rosa_samantha	Rh6AG136100 Rh6BG132900 Rh6BG133100 Rh6DG118700 Rh6DG118900
rosa_wichuraiana	Rw6G011720 Rw6G011730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	77
AccIII	TCCGGA	1 cut(s)	598
AclWI	GGATC	1 cut(s)	493
AcsI	RAATTY	1 cut(s)	325
AcuI	CTGAAG	1 cut(s)	747
AcyI	GRCGYC	1 cut(s)	171
AfaI	GTAC	3 cut(s)	308, 454, 776
AfiI	CCNNNNNNNGG	3 cut(s)	384, 385, 719
AflIII	ACRYGT	1 cut(s)	592
AgsI	TTSAA	4 cut(s)	160, 358, 538, 626
AjnI	CCWGG	2 cut(s)	364, 517
AleI	CACNNNNGTG	1 cut(s)	764
AluBI	AGCT	5 cut(s)	227, 269, 425, 610, 731
AluI	AGCT	5 cut(s)	227, 269, 425, 610, 731
Alw21I	GWGCWC	1 cut(s)	229
Alw26I	GTCTC	2 cut(s)	535, 681
AlwI	GGATC	1 cut(s)	493
Ama87I	CYCGRG	1 cut(s)	481
Aor13HI	TCCGGA	1 cut(s)	598
ApoI	RAATTY	1 cut(s)	325
Asp700I	GAANNNNTTC	1 cut(s)	329
AspLEI	GCGC	1 cut(s)	77
AsuHPI	GGTGA	1 cut(s)	80
AvaI	CYCGRG	1 cut(s)	481
BaeI	ACNNNNGTAYC	2 cut(s)	436, 469
BanII	GRGCYC	2 cut(s)	229, 714
BbsI	GAAGAC	2 cut(s)	254, 667
Bbv12I	GWGCWC	1 cut(s)	229
BccI	CCATC	1 cut(s)	404
BcgI	CGANNNNNNTGC	2 cut(s)	199, 233
BciT130I	CCWGG	2 cut(s)	366, 519
BciVI	GTATCC	1 cut(s)	332
BcoDI	GTCTC	2 cut(s)	535, 681
BfuI	GTATCC	1 cut(s)	332
Bme1390I	CCNGG	2 cut(s)	366, 519
BmeT110I	CYCGRG	1 cut(s)	481
BmiI	GGNNCC	2 cut(s)	370, 639
BmrFI	CCNGG	2 cut(s)	366, 519
BmsI	GCATC	1 cut(s)	302
BpiI	GAAGAC	2 cut(s)	254, 667
BpmI	CTGGAG	1 cut(s)	387
BpuEI	CTTGAG	3 cut(s)	205, 599, 602
BsaBI	GATNNNNATC	1 cut(s)	219
BsaHI	GRCGYC	1 cut(s)	171
BsaI	GGTCTC	1 cut(s)	681
BsaJI	CCNNGG	2 cut(s)	383, 517
BsaWI	WCCGGW	1 cut(s)	598
BsaXI	ACNNNNNCTCC	4 cut(s)	364, 394, 515, 545
Bsc4I	CCNNNNNNNGG	3 cut(s)	384, 385, 719
Bse118I	RCCGGY	2 cut(s)	41, 83
Bse1I	ACTGG	1 cut(s)	784
Bse8I	GATNNNNATC	1 cut(s)	219
BseAI	TCCGGA	1 cut(s)	598
BseBI	CCWGG	2 cut(s)	366, 519
BseDI	CCNNGG	2 cut(s)	383, 517
BseGI	GGATG	3 cut(s)	147, 415, 481
BseJI	GATNNNNATC	1 cut(s)	219
BseLI	CCNNNNNNNGG	3 cut(s)	384, 385, 719
BseMII	CTCAG	1 cut(s)	684
BseNI	ACTGG	1 cut(s)	784
BseRI	GAGGAG	1 cut(s)	602
BseYI	CCCAGC	1 cut(s)	130
Bsh1236I	CGCG	1 cut(s)	77
Bsh1285I	CGRYCG	1 cut(s)	223
BsiEI	CGRYCG	1 cut(s)	223
BsiHKAI	GWGCWC	1 cut(s)	229
BsiHKCI	CYCGRG	1 cut(s)	481
BsiSI	CCGG	3 cut(s)	42, 84, 599
BslI	CCNNNNNNNGG	3 cut(s)	384, 385, 719
BsmAI	GTCTC	2 cut(s)	535, 681
BsmBI	CGTCTC	1 cut(s)	535
Bso31I	GGTCTC	1 cut(s)	681
BsoBI	CYCGRG	1 cut(s)	481
Bsp1286I	GDGCHC	2 cut(s)	229, 714
Bsp13I	TCCGGA	1 cut(s)	598
Bsp143I	GATC	3 cut(s)	144, 220, 498
BspCNI	CTCAG	1 cut(s)	683
BspEI	TCCGGA	1 cut(s)	598
BspFNI	CGCG	1 cut(s)	77
BspLI	GGNNCC	2 cut(s)	370, 639
BspPI	GGATC	1 cut(s)	493
BspTNI	GGTCTC	1 cut(s)	681
BsrFI	RCCGGY	2 cut(s)	41, 83
BsrI	ACTGG	1 cut(s)	784
BssAI	RCCGGY	2 cut(s)	41, 83
BssECI	CCNNGG	2 cut(s)	383, 517
BssMI	GATC	3 cut(s)	144, 220, 498
BssNI	GRCGYC	1 cut(s)	171
BssT1I	CCWWGG	1 cut(s)	383
Bst2UI	CCWGG	2 cut(s)	366, 519
Bst4CI	ACNGT	2 cut(s)	529, 657
BstACI	GRCGYC	1 cut(s)	171
BstC8I	GCNNGC	2 cut(s)	73, 243
BstDEI	CTNAG	1 cut(s)	670
BstEII	GGTNACC	1 cut(s)	86
BstF5I	GGATG	3 cut(s)	147, 415, 481
BstFNI	CGCG	1 cut(s)	77
BstHHI	GCGC	1 cut(s)	77
BstKTI	GATC	3 cut(s)	147, 223, 501
BstMAI	GTCTC	2 cut(s)	535, 681
BstMBI	GATC	3 cut(s)	144, 220, 498
BstMCI	CGRYCG	1 cut(s)	223
BstMWI	GCNNNNNNNGC	1 cut(s)	266
BstNI	CCWGG	2 cut(s)	366, 519
BstNSI	RCATGY	1 cut(s)	596
BstPI	GGTNACC	1 cut(s)	86
BstSCI	CCNGG	2 cut(s)	364, 517
BstUI	CGCG	1 cut(s)	77
BstV2I	GAAGAC	2 cut(s)	254, 667
BstX2I	RGATCY	1 cut(s)	498
BstYI	RGATCY	1 cut(s)	498
BsuI	GTATCC	1 cut(s)	332
BtsCI	GGATG	3 cut(s)	147, 415, 481
BtsI	GCAGTG	1 cut(s)	372
BtsIMutI	CAGTG	2 cut(s)	372, 771
Cac8I	GCNNGC	2 cut(s)	73, 243
CfoI	GCGC	1 cut(s)	77
Cfr10I	RCCGGY	2 cut(s)	41, 83
CseI	GACGC	1 cut(s)	160
Csp6I	GTAC	3 cut(s)	307, 453, 775
CviAII	CATG	3 cut(s)	230, 511, 593
CviQI	GTAC	3 cut(s)	307, 453, 775
DdeI	CTNAG	1 cut(s)	670
DpnI	GATC	3 cut(s)	146, 222, 500
DpnII	GATC	3 cut(s)	144, 220, 498
Ecl136II	GAGCTC	1 cut(s)	227
Eco130I	CCWWGG	1 cut(s)	383
Eco24I	GRGCYC	2 cut(s)	229, 714
Eco31I	GGTCTC	1 cut(s)	681
Eco53kI	GAGCTC	1 cut(s)	227
Eco57I	CTGAAG	1 cut(s)	747
Eco88I	CYCGRG	1 cut(s)	481
Eco91I	GGTNACC	1 cut(s)	86
EcoICRI	GAGCTC	1 cut(s)	227
EcoO65I	GGTNACC	1 cut(s)	86
EcoRII	CCWGG	2 cut(s)	364, 517
EcoT14I	CCWWGG	1 cut(s)	383
EcoT38I	GRGCYC	2 cut(s)	229, 714
ErhI	CCWWGG	1 cut(s)	383
Esp3I	CGTCTC	1 cut(s)	535
FaeI	CATG	3 cut(s)	233, 514, 596
FaiI	YATR	8 cut(s)	231, 258, 315, 459, 512, 594, 663, 693
FatI	CATG	3 cut(s)	229, 510, 592
FokI	GGATG	3 cut(s)	134, 422, 488
FriOI	GRGCYC	2 cut(s)	229, 714
GlaI	GCGC	1 cut(s)	76
GsaI	CCCAGC	1 cut(s)	134
GsuI	CTGGAG	1 cut(s)	387
HapII	CCGG	3 cut(s)	42, 84, 599
HgaI	GACGC	1 cut(s)	160
HhaI	GCGC	1 cut(s)	77
Hin1I	GRCGYC	1 cut(s)	171
Hin1II	CATG	3 cut(s)	233, 514, 596
Hin6I	GCGC	1 cut(s)	75
HinP1I	GCGC	1 cut(s)	75
HincII	GTYRAC	1 cut(s)	175
HindII	GTYRAC	1 cut(s)	175
HinfI	GANTC	4 cut(s)	22, 301, 358, 622
HpaII	CCGG	3 cut(s)	42, 84, 599
HphI	GGTGA	1 cut(s)	80
Hpy166II	GTNNAC	3 cut(s)	175, 309, 769
Hpy188I	TCNGA	3 cut(s)	35, 202, 722
Hpy188III	TCNNGA	8 cut(s)	110, 184, 322, 336, 599, 616, 626, 679
Hpy8I	GTNNAC	3 cut(s)	175, 309, 769
Hpy99I	CGWCG	4 cut(s)	68, 256, 323, 401
HpyAV	CCTTC	3 cut(s)	207, 544, 676
HpyCH4III	ACNGT	2 cut(s)	529, 657
HpyCH4IV	ACGT	2 cut(s)	254, 447
HpyF10VI	GCNNNNNNNGC	1 cut(s)	266
HpyF3I	CTNAG	1 cut(s)	670
HpySE526I	ACGT	2 cut(s)	254, 447
Hsp92I	GRCGYC	1 cut(s)	171
Hsp92II	CATG	3 cut(s)	233, 514, 596
HspAI	GCGC	1 cut(s)	75
Kpn2I	TCCGGA	1 cut(s)	598
Kzo9I	GATC	3 cut(s)	144, 220, 498
LmnI	GCTCC	2 cut(s)	368, 615
LweI	GCATC	1 cut(s)	302
MaeII	ACGT	2 cut(s)	254, 447
MaeIII	GTNAC	2 cut(s)	86, 665
MalI	GATC	3 cut(s)	146, 222, 500
MboI	GATC	3 cut(s)	144, 220, 498
MboII	GAAGA	8 cut(s)	259, 322, 574, 577, 598, 614, 631, 667
MflI	RGATCY	1 cut(s)	498
MhlI	GDGCHC	2 cut(s)	229, 714
MluCI	AATT	1 cut(s)	325
MmeI	TCCRAC	1 cut(s)	13
MnlI	CCTC	8 cut(s)	71, 283, 390, 512, 622, 623, 697, 788
MroI	TCCGGA	1 cut(s)	598
MroXI	GAANNNNTTC	1 cut(s)	329
MseI	TTAA	3 cut(s)	432, 465, 491
MslI	CAYNNNNRTG	1 cut(s)	764
MspI	CCGG	3 cut(s)	42, 84, 599
MspR9I	CCNGG	2 cut(s)	366, 519
MvaI	CCWGG	2 cut(s)	366, 519
MvnI	CGCG	1 cut(s)	77
MwoI	GCNNNNNNNGC	1 cut(s)	266
NdeII	GATC	3 cut(s)	144, 220, 498
NlaIII	CATG	3 cut(s)	233, 514, 596
NlaIV	GGNNCC	2 cut(s)	370, 639
NmuCI	GTSAC	1 cut(s)	86
NspI	RCATGY	1 cut(s)	596
OliI	CACNNNNGTG	1 cut(s)	764
PciI	ACATGT	1 cut(s)	592
PdmI	GAANNNNTTC	1 cut(s)	329
PfeI	GAWTC	4 cut(s)	22, 301, 358, 622
Ple19I	CGATCG	1 cut(s)	223
PscI	ACATGT	1 cut(s)	592
Psp124BI	GAGCTC	1 cut(s)	229
Psp6I	CCWGG	2 cut(s)	364, 517
PspEI	GGTNACC	1 cut(s)	86
PspFI	CCCAGC	1 cut(s)	130
PspGI	CCWGG	2 cut(s)	364, 517
PspN4I	GGNNCC	2 cut(s)	370, 639
PsuI	RGATCY	1 cut(s)	498
PvuI	CGATCG	1 cut(s)	223
RsaI	GTAC	3 cut(s)	308, 454, 776
RsaNI	GTAC	3 cut(s)	307, 453, 775
RseI	CAYNNNNRTG	1 cut(s)	764
SacI	GAGCTC	1 cut(s)	229
SaqAI	TTAA	3 cut(s)	432, 465, 491
Sau3AI	GATC	3 cut(s)	144, 220, 498
ScrFI	CCNGG	2 cut(s)	366, 519
SduI	GDGCHC	2 cut(s)	229, 714
SfaNI	GCATC	1 cut(s)	302
SmiMI	CAYNNNNRTG	1 cut(s)	764
SmlI	CTYRAG	3 cut(s)	184, 581, 614
SmoI	CTYRAG	3 cut(s)	184, 581, 614
Sse9I	AATT	1 cut(s)	325
SstI	GAGCTC	1 cut(s)	229
StyD4I	CCNGG	2 cut(s)	364, 517
StyI	CCWWGG	1 cut(s)	383
TaaI	ACNGT	2 cut(s)	529, 657
TaiI	ACGT	2 cut(s)	257, 450
TaqI	TCGA	5 cut(s)	66, 109, 219, 223, 708
TasI	AATT	1 cut(s)	325
TfiI	GAWTC	4 cut(s)	22, 301, 358, 622
Tru1I	TTAA	3 cut(s)	432, 465, 491
Tru9I	TTAA	3 cut(s)	432, 465, 491
TscAI	CASTG	2 cut(s)	379, 771
TseFI	GTSAC	1 cut(s)	86
Tsp45I	GTSAC	1 cut(s)	86
TspDTI	ATGAA	1 cut(s)	37
TspGWI	ACGGA	1 cut(s)	294
TspRI	CASTG	2 cut(s)	379, 771
XapI	RAATTY	1 cut(s)	325
XceI	RCATGY	1 cut(s)	596
XmnI	GAANNNNTTC	1 cut(s)	329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.