Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0005597

Physical Location & Seq

Genomic Coordinates Forward (+)

8048362 .. 8050962

Gene Structure 2601 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g09120.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGAGGACATTCTCGTCATTCCAATCTCCCACCGGTCCTATTAATACCAGCAAAGTGAACGGCATGCTTATACTCTCCTCATCTTCTGCTCGACTACTCCTCGTTTCACTTGCAACGCTTTCTCTCGCTTTCTTCCTCCGACTTTTCCCAATGGCGCATACCAAATCCAATATTCTCTTCATCGGCGGCACCGGCTACATTGGTAAGTTCATCGTCGAGGCCAGCGCCAAGGCTGGCCACCCCACTTTCGTTCTCGTCCGGGAGTCCACTCTCTCCAACCCGGACAAGTCCAAAGTCATCGACTCCTTCAAAGCCTCCGGCGTCAACTTCGTCCTTGGTGATCTGTACGACCACGAGAGCCTTGTGAAGGCGATTAAGCAAGTCGATGTGGTGATTTCGACGGTGGGTCACGCTCAGTTGGCCGATCAGGGCAACATTATCGCTGCCATTAAAGAAGCCGGAAATGTTAAGAGATTTTTCCCTTCCGAGTTTGGAAACGACGTGGATCGAGTGCACGCCGTTGAGCCAGCAAAGACGGCGTTCGCTACAAAAGCTAAGGTCAGAAGAGATGTTGAGGCGGCCGGGATTCCCTACACTTATGTGTCGTCAAACTTCTTTGCTGGGTACTTCCTGCCCAGTCTGAACCAGCCCGGAGCTACTGCTCCTCCCAAGGACAAAGTCGTCATTTTGGGTGATGGCAACCCCAAAGCAATTTTTAACAAGGAAGAGGATATTGCTACCTATACCATTAACGCTGTGGATGATCCAAGAACATTGAACAAGATCCTCTACATCCGGCCACCTGCCAACACCATCTCCTTCAACGAACTTGTGGCTCTTTGGGAGAAGAAGATTGGCAAAACCCTGGAGAAGGTCTATATCCATGAGGAGCAACTACTCAAGAACATTCAAGAGGCTCCAGTTCCAATCAATGTGATACTATCAATCGGTCACTCGGTTTTTGTGAAAGGAGACCACACTAACTTTGAGGTCGAGCCGTCATTTGGAGTGGAAGCTACTGCTCTTTACCCTGATGTCAAATACACTATTGTGGAGGAGTACCTCTCCCAGTTTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009806 GO:0009807 GO:0009987 GO:0010035 GO:0010038 GO:0016491 GO:0016651 GO:0019438 GO:0019748 GO:0042221 GO:0044237 GO:0044249 GO:0044550 GO:0046686 GO:0050664 GO:0050896 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NmrA

Protein Analysis

360

Amino Acids

39.24

Weight (kDa)

7.11

Isoelectric Point (pI)

31.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NmrA	PF05368	54 - 355	1.2e-96	NmrA-like family
Epimerase	PF01370	58 - 137	2.5e-08	NAD dependent epimerase/dehydratase family
NAD_binding_10	PF13460	62 - 204	3.9e-14	NAD(P)H-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005597)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39230
fragaria_vesca	FvH4_2g09110 FvH4_2g09120
malus_domestica	MD10G1073200.v1.1 MD10G1073500.v1.1
prunus_persica	Prupe.8G094500_v2.0.a1
pyrus_communis	pycom10g05770 pycom10g05780
rosa_chinensis	RchiOBHm_Chr6g0265001 RchiOBHm_Chr6g0265011
rosa_laevigata	RLG00000014216 RLG00000014221 RLG00000014224
rosa_multiflora	Rmu_sc0000546.1_g000080 Rmu_sc0002934.1_g000023
rosa_roxburghii	Rroxscaffold_175G00432080 Rroxscaffold_175G00432090 Rroxscaffold_7G00203100 Rroxscaffold_7G00203110
rosa_rugosa	Rorug06G0013800 Rorug06G0013900
rosa_samantha	Rh6AG136100 Rh6BG132900 Rh6BG133100 Rh6DG118700 Rh6DG118900
rosa_wichuraiana	Rw6G011720 Rw6G011730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	811
AasI	GACNNNNNNGTC	2 cut(s)	13, 680
Acc36I	ACCTGC	1 cut(s)	811
AccB1I	GGYRCC	1 cut(s)	188
AciI	CCGC	2 cut(s)	186, 578
AclWI	GGATC	3 cut(s)	513, 758, 778
AcoI	YGGCCR	4 cut(s)	235, 420, 579, 797
AcyI	GRCGYC	1 cut(s)	321
AfaI	GTAC	3 cut(s)	347, 626, 1061
AfiI	CCNNNNNNNGG	3 cut(s)	367, 871, 1004
AgeI	ACCGGT	1 cut(s)	32
AgsI	TTSAA	4 cut(s)	310, 778, 823, 911
AhdI	GACNNNNNGTC	1 cut(s)	405
AjiI	CACGTC	1 cut(s)	502
AjnI	CCWGG	1 cut(s)	864
AjuI	GAANNNNNNNTTGG	2 cut(s)	161, 193
AleI	CACNNNNGTG	2 cut(s)	599, 1049
AluBI	AGCT	3 cut(s)	554, 656, 1016
AluI	AGCT	3 cut(s)	554, 656, 1016
Alw21I	GWGCWC	1 cut(s)	516
Alw26I	GTCTC	1 cut(s)	966
Alw44I	GTGCAC	1 cut(s)	512
AlwI	GGATC	3 cut(s)	513, 758, 778
AoxI	GGCC	5 cut(s)	219, 235, 420, 579, 797
ApaLI	GTGCAC	1 cut(s)	512
ApeKI	GCWGC	1 cut(s)	443
AseI	ATTAAT	1 cut(s)	42
AsiGI	ACCGGT	1 cut(s)	32
AspLEI	GCGC	2 cut(s)	157, 227
AspS9I	GGNCC	1 cut(s)	35
AsuC2I	CCSGG	4 cut(s)	260, 281, 583, 651
AsuHPI	GGTGA	3 cut(s)	350, 403, 704
AvaII	GGWCC	1 cut(s)	35
BaeGI	GKGCMC	1 cut(s)	516
BalI	TGGCCA	1 cut(s)	237
BanI	GGYRCC	1 cut(s)	188
BauI	CACGAG	1 cut(s)	353
Bbv12I	GWGCWC	1 cut(s)	516
BbvI	GCAGC	1 cut(s)	430
BccI	CCATC	2 cut(s)	689, 821
BceAI	ACGGC	4 cut(s)	76, 503, 552, 982
BcgI	CGANNNNNNTGC	2 cut(s)	421, 455
BciT130I	CCWGG	1 cut(s)	866
BcnI	CCSGG	4 cut(s)	260, 281, 583, 651
BcoDI	GTCTC	1 cut(s)	966
BfoI	RGCGCY	1 cut(s)	228
BfuAI	ACCTGC	1 cut(s)	811
BisI	GCNGC	3 cut(s)	187, 444, 579
BlsI	GCNGC	3 cut(s)	188, 445, 580
Bme1390I	CCNGG	5 cut(s)	260, 281, 583, 651, 866
Bme18I	GGWCC	1 cut(s)	35
BmeRI	GACNNNNNGTC	1 cut(s)	405
BmgBI	CACGTC	1 cut(s)	502
BmgT120I	GGNCC	1 cut(s)	35
BmiI	GGNNCC	2 cut(s)	190, 918
BmrFI	CCNGG	5 cut(s)	260, 281, 583, 651, 866
BmrI	ACTGGG	2 cut(s)	630, 1063
BmuI	ACTGGG	2 cut(s)	630, 1063
BplI	GAGNNNNNCTC	1 cut(s)	1049
BpmI	CTGGAG	2 cut(s)	887, 903
Bpu10I	CCTNAGC	1 cut(s)	555
BpuEI	CTTGAG	1 cut(s)	884
BpuMI	CCSGG	4 cut(s)	260, 281, 583, 651
BsaHI	GRCGYC	1 cut(s)	321
BsaI	GGTCTC	1 cut(s)	966
BsaJI	CCNNGG	4 cut(s)	228, 334, 669, 864
BsaWI	WCCGGW	1 cut(s)	32
BsaXI	ACNNNNNCTCC	4 cut(s)	649, 679, 800, 830
Bsc4I	CCNNNNNNNGG	3 cut(s)	367, 871, 1004
Bse118I	RCCGGY	2 cut(s)	32, 191
Bse1I	ACTGG	3 cut(s)	636, 920, 1069
BseBI	CCWGG	1 cut(s)	866
BseDI	CCNNGG	4 cut(s)	228, 334, 669, 864
BseGI	GGATG	2 cut(s)	766, 792
BseLI	CCNNNNNNNGG	3 cut(s)	367, 871, 1004
BseMII	CTCAG	1 cut(s)	428
BseNI	ACTGG	3 cut(s)	636, 920, 1069
BseRI	GAGGAG	5 cut(s)	67, 89, 654, 902, 1070
BseSI	GKGCMC	1 cut(s)	516
BseX3I	CGGCCG	1 cut(s)	579
BseXI	GCAGC	1 cut(s)	430
BseYI	CCCAGC	1 cut(s)	620
Bsh1285I	CGRYCG	1 cut(s)	582
BshFI	GGCC	5 cut(s)	221, 237, 422, 581, 799
BshNI	GGYRCC	1 cut(s)	188
BshTI	ACCGGT	1 cut(s)	32
BsiEI	CGRYCG	1 cut(s)	582
BsiHKAI	GWGCWC	1 cut(s)	516
BsiSI	CCGG	9 cut(s)	33, 192, 259, 281, 318, 459, 582, 651, 796
BslI	CCNNNNNNNGG	3 cut(s)	367, 871, 1004
BsmAI	GTCTC	1 cut(s)	966
BsnI	GGCC	5 cut(s)	221, 237, 422, 581, 799
Bso31I	GGTCTC	1 cut(s)	966
Bsp1286I	GDGCHC	1 cut(s)	516
Bsp143I	GATC	5 cut(s)	340, 424, 505, 763, 783
BspACI	CCGC	2 cut(s)	186, 578
BspANI	GGCC	5 cut(s)	221, 237, 422, 581, 799
BspCNI	CTCAG	1 cut(s)	427
BspLI	GGNNCC	2 cut(s)	190, 918
BspMI	ACCTGC	1 cut(s)	811
BspPI	GGATC	3 cut(s)	513, 758, 778
BspT107I	GGYRCC	1 cut(s)	188
BspTNI	GGTCTC	1 cut(s)	966
BsrFI	RCCGGY	2 cut(s)	32, 191
BsrI	ACTGG	3 cut(s)	636, 920, 1069
BssAI	RCCGGY	2 cut(s)	32, 191
BssECI	CCNNGG	4 cut(s)	228, 334, 669, 864
BssMI	GATC	5 cut(s)	340, 424, 505, 763, 783
BssNI	GRCGYC	1 cut(s)	321
BssSI	CACGAG	1 cut(s)	353
BssT1I	CCWWGG	3 cut(s)	228, 334, 669
Bst2BI	CACGAG	1 cut(s)	353
Bst2UI	CCWGG	1 cut(s)	866
Bst4CI	ACNGT	1 cut(s)	403
Bst6I	CTCTTC	3 cut(s)	182, 559, 720
BstACI	GRCGYC	1 cut(s)	321
BstC8I	GCNNGC	5 cut(s)	65, 223, 235, 516, 528
BstDEI	CTNAG	2 cut(s)	414, 555
BstENI	CCTNNNNNAGG	2 cut(s)	365, 869
BstF5I	GGATG	2 cut(s)	766, 792
BstH2I	RGCGCY	1 cut(s)	228
BstHHI	GCGC	2 cut(s)	157, 227
BstKTI	GATC	5 cut(s)	343, 427, 508, 766, 786
BstMAI	GTCTC	1 cut(s)	966
BstMBI	GATC	5 cut(s)	340, 424, 505, 763, 783
BstMCI	CGRYCG	1 cut(s)	582
BstMWI	GCNNNNNNNGC	4 cut(s)	192, 419, 536, 551
BstNI	CCWGG	1 cut(s)	866
BstNSI	RCATGY	1 cut(s)	67
BstSCI	CCNGG	5 cut(s)	258, 279, 581, 649, 864
BstSLI	GKGCMC	1 cut(s)	516
BstV1I	GCAGC	1 cut(s)	430
BstX2I	RGATCY	1 cut(s)	783
BstYI	RGATCY	1 cut(s)	783
BstZI	CGGCCG	1 cut(s)	579
BsuRI	GGCC	5 cut(s)	221, 237, 422, 581, 799
BtrI	CACGTC	1 cut(s)	502
BtsCI	GGATG	2 cut(s)	766, 792
BveI	ACCTGC	1 cut(s)	811
Cac8I	GCNNGC	5 cut(s)	65, 223, 235, 516, 528
CfoI	GCGC	2 cut(s)	157, 227
Cfr10I	RCCGGY	2 cut(s)	32, 191
Cfr13I	GGNCC	1 cut(s)	35
CseI	GACGC	1 cut(s)	310
Csp6I	GTAC	3 cut(s)	346, 625, 1060
CspAI	ACCGGT	1 cut(s)	32
CviAII	CATG	2 cut(s)	64, 884
CviQI	GTAC	3 cut(s)	346, 625, 1060
DdeI	CTNAG	2 cut(s)	414, 555
DpnI	GATC	5 cut(s)	342, 426, 507, 765, 785
DpnII	GATC	5 cut(s)	340, 424, 505, 763, 783
DrdI	GACNNNNNNGTC	2 cut(s)	13, 680
DriI	GACNNNNNGTC	1 cut(s)	405
DseDI	GACNNNNNNGTC	2 cut(s)	13, 680
EaeI	YGGCCR	4 cut(s)	235, 420, 579, 797
EagI	CGGCCG	1 cut(s)	579
Eam1104I	CTCTTC	3 cut(s)	182, 559, 720
Eam1105I	GACNNNNNGTC	1 cut(s)	405
EarI	CTCTTC	3 cut(s)	182, 559, 720
EclXI	CGGCCG	1 cut(s)	579
Eco130I	CCWWGG	3 cut(s)	228, 334, 669
Eco31I	GGTCTC	1 cut(s)	966
Eco47I	GGWCC	1 cut(s)	35
Eco52I	CGGCCG	1 cut(s)	579
EcoNI	CCTNNNNNAGG	2 cut(s)	365, 869
EcoRII	CCWGG	1 cut(s)	864
EcoT14I	CCWWGG	3 cut(s)	228, 334, 669
ErhI	CCWWGG	3 cut(s)	228, 334, 669
FaeI	CATG	2 cut(s)	67, 887
FaiI	YATR	7 cut(s)	65, 71, 159, 600, 744, 879, 885
FatI	CATG	2 cut(s)	63, 883
Fnu4HI	GCNGC	3 cut(s)	187, 444, 579
FokI	GGATG	2 cut(s)	773, 779
Fsp4HI	GCNGC	3 cut(s)	187, 444, 579
GlaI	GCGC	2 cut(s)	156, 226
GluI	GCNGC	3 cut(s)	187, 444, 579
GsaI	CCCAGC	1 cut(s)	624
GsuI	CTGGAG	2 cut(s)	887, 903
HaeII	RGCGCY	1 cut(s)	228
HaeIII	GGCC	5 cut(s)	221, 237, 422, 581, 799
HapII	CCGG	9 cut(s)	33, 192, 259, 281, 318, 459, 582, 651, 796
HgaI	GACGC	1 cut(s)	310
HhaI	GCGC	2 cut(s)	157, 227
Hin1I	GRCGYC	1 cut(s)	321
Hin1II	CATG	2 cut(s)	67, 887
Hin6I	GCGC	2 cut(s)	155, 225
HinP1I	GCGC	2 cut(s)	155, 225
HincII	GTYRAC	1 cut(s)	325
HindII	GTYRAC	1 cut(s)	325
HinfI	GANTC	3 cut(s)	263, 302, 586
HpaII	CCGG	9 cut(s)	33, 192, 259, 281, 318, 459, 582, 651, 796
HphI	GGTGA	3 cut(s)	350, 403, 704
Hpy166II	GTNNAC	4 cut(s)	58, 267, 325, 514
Hpy188I	TCNGA	5 cut(s)	140, 487, 563, 642, 1079
Hpy188III	TCNNGA	2 cut(s)	901, 911
Hpy8I	GTNNAC	4 cut(s)	58, 267, 325, 514
Hpy99I	CGWCG	3 cut(s)	218, 403, 503
HpyAV	CCTTC	5 cut(s)	316, 361, 492, 829, 865
HpyCH4III	ACNGT	1 cut(s)	403
HpyCH4IV	ACGT	1 cut(s)	501
HpyCH4V	TGCA	2 cut(s)	113, 514
HpyF10VI	GCNNNNNNNGC	4 cut(s)	192, 419, 536, 551
HpyF3I	CTNAG	2 cut(s)	414, 555
HpySE526I	ACGT	1 cut(s)	501
Hsp92I	GRCGYC	1 cut(s)	321
Hsp92II	CATG	2 cut(s)	67, 887
HspAI	GCGC	2 cut(s)	155, 225
Kzo9I	GATC	5 cut(s)	340, 424, 505, 763, 783
LmnI	GCTCC	4 cut(s)	653, 667, 889, 922
Lsp1109I	GCAGC	1 cut(s)	430
MaeII	ACGT	1 cut(s)	501
MaeIII	GTNAC	2 cut(s)	407, 950
MalI	GATC	5 cut(s)	342, 426, 507, 765, 785
MboI	GATC	5 cut(s)	340, 424, 505, 763, 783
MboII	GAAGA	7 cut(s)	75, 124, 169, 576, 737, 859, 862
MflI	RGATCY	1 cut(s)	783
MhlI	GDGCHC	1 cut(s)	516
MlsI	TGGCCA	1 cut(s)	237
MluCI	AATT	1 cut(s)	711
MluNI	TGGCCA	1 cut(s)	237
MlyI	GAGTC	2 cut(s)	272, 296
MmeI	TCCRAC	2 cut(s)	163, 300
Mox20I	TGGCCA	1 cut(s)	237
MscI	TGGCCA	1 cut(s)	237
MseI	TTAA	6 cut(s)	42, 375, 450, 468, 717, 750
MslI	CAYNNNNRTG	2 cut(s)	599, 1049
Msp20I	TGGCCA	1 cut(s)	237
MspI	CCGG	9 cut(s)	33, 192, 259, 281, 318, 459, 582, 651, 796
MspR9I	CCNGG	5 cut(s)	260, 281, 583, 651, 866
MvaI	CCWGG	1 cut(s)	866
MwoI	GCNNNNNNNGC	4 cut(s)	192, 419, 536, 551
NciI	CCSGG	4 cut(s)	260, 281, 583, 651
NdeII	GATC	5 cut(s)	340, 424, 505, 763, 783
NlaIII	CATG	2 cut(s)	67, 887
NlaIV	GGNNCC	2 cut(s)	190, 918
NmuCI	GTSAC	2 cut(s)	407, 950
NspI	RCATGY	1 cut(s)	67
OliI	CACNNNNGTG	2 cut(s)	599, 1049
PaeI	GCATGC	1 cut(s)	67
PaqCI	CACCTGC	1 cut(s)	811
PfeI	GAWTC	1 cut(s)	586
PflFI	GACNNNGTC	1 cut(s)	677
PfoI	TCCNGGA	1 cut(s)	258
PinAI	ACCGGT	1 cut(s)	32
PkrI	GCNGC	3 cut(s)	188, 445, 580
PleI	GAGTC	2 cut(s)	271, 296
PpsI	GAGTC	2 cut(s)	271, 296
PshBI	ATTAAT	1 cut(s)	42
Psp6I	CCWGG	1 cut(s)	864
PspFI	CCCAGC	1 cut(s)	620
PspGI	CCWGG	1 cut(s)	864
PspN4I	GGNNCC	2 cut(s)	190, 918
PspPI	GGNCC	1 cut(s)	35
PsuI	RGATCY	1 cut(s)	783
PsyI	GACNNNGTC	1 cut(s)	677
RsaI	GTAC	3 cut(s)	347, 626, 1061
RsaNI	GTAC	3 cut(s)	346, 625, 1060
RseI	CAYNNNNRTG	2 cut(s)	599, 1049
SaqAI	TTAA	6 cut(s)	42, 375, 450, 468, 717, 750
SatI	GCNGC	3 cut(s)	187, 444, 579
Sau3AI	GATC	5 cut(s)	340, 424, 505, 763, 783
Sau96I	GGNCC	1 cut(s)	35
SchI	GAGTC	2 cut(s)	272, 296
ScrFI	CCNGG	5 cut(s)	260, 281, 583, 651, 866
SduI	GDGCHC	1 cut(s)	516
SinI	GGWCC	1 cut(s)	35
SmiMI	CAYNNNNRTG	2 cut(s)	599, 1049
SmlI	CTYRAG	1 cut(s)	899
SmoI	CTYRAG	1 cut(s)	899
SphI	GCATGC	1 cut(s)	67
Sse9I	AATT	1 cut(s)	711
SsiI	CCGC	2 cut(s)	186, 578
SspI	AATATT	1 cut(s)	172
StyD4I	CCNGG	5 cut(s)	258, 279, 581, 649, 864
StyI	CCWWGG	3 cut(s)	228, 334, 669
TaaI	ACNGT	1 cut(s)	403
TaiI	ACGT	1 cut(s)	504
TaqI	TCGA	7 cut(s)	91, 216, 300, 384, 398, 508, 993
TaqII	GACCGA	1 cut(s)	938
TasI	AATT	1 cut(s)	711
TauI	GCSGC	2 cut(s)	189, 581
TfiI	GAWTC	1 cut(s)	586
Tru1I	TTAA	6 cut(s)	42, 375, 450, 468, 717, 750
Tru9I	TTAA	6 cut(s)	42, 375, 450, 468, 717, 750
TseFI	GTSAC	2 cut(s)	407, 950
TseI	GCWGC	1 cut(s)	443
Tsp45I	GTSAC	2 cut(s)	407, 950
TspDTI	ATGAA	2 cut(s)	169, 199
Tth111I	GACNNNGTC	1 cut(s)	677
VneI	GTGCAC	1 cut(s)	512
VpaK11BI	GGWCC	1 cut(s)	35
VspI	ATTAAT	1 cut(s)	42
XagI	CCTNNNNNAGG	2 cut(s)	365, 869
XceI	RCATGY	1 cut(s)	67
XcmI	CCANNNNNNNNNTGG	1 cut(s)	754

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.