Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0005597

Physical Location & Seq

Genomic Coordinates Forward (+)

20859031 .. 20861393

Gene Structure 2363 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G011730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGCTATTACTATCGTCCACTCGTCTAATCGTCCTTTCATTTGCAACGCTTTCTCTCGCCTTCATTCTCCGACAACAACTCCTGTTCCCGGATCCAATGGCTCAAACCAAGTCCAAGATTCTCTTCATCGGAGGCACTGGCTACATTGGTAAGTTCATAGTCGAGGCCAGCGCCAAGGCCGGCCACCCCACCTTCGTTCTCGTCCGGGAGCCCACTCTCTCCAACCCGGCCAAGTCTAAAGTCATCGACAGCTTCAAGGCCTCCGGCGTCAATTTCGTCCTGGGTGATCTGTACGACCACGAGAGCCTTGTGAAGGCGATTAAGCAAGTCGATGTGGTGATTTCGACGGTGGGTCACGGGCAGTTGGCTGATCAAGGCAAGATCATCGCCGCCATTAAAGAAGCCGGCAATGTCAAGAGGTTTTTCCCTTCCGAGTTTGGAAACGACGTGGATCGAGTCCACGCTGTGGAGCCAGCAAAGACGGCGTTCGCTACGAAAGCCAAGGTCCGCAGAGATGTTGAGGCGGCCGGGATTCCCTTCACTTATGTGTCATCAAACTTCTTTGCTGGTTACTTCTTGCCCAATCTGAACCAGCCCGGAGCTACTGCTCCTCCCAGGGACAAAGTCGTCATTTTGGGTGATGGCAACCCCAAAGCGATCTTTAACAAGGAAGAGGATATTGGTACCTATACCATTAAGGCTGTGGATGACCCAAGAACATTGAACAAGATCCTCTACATCCGGCCACCTGCCAACACCTTCTCCTTCAACGAACTTGTGGCTCTTTGGGAGAAGAAGATTGGAAAAACCCTCGAGAAGGTCTATGTCCCAGAGGAGCAACTACTCAAAAACATTCAAGAGGCTGAGGTTCCAATCAATGTGATACTGGCAATCGGTCACTCAGTTTTTGTGAAAGGAGACCACACTAACTTTGAGATCGAGCCCTCATTTGGAGTCGAAGCTACTGCTCTTTACCCTGATGTCAAATACACTACTGTGGATGAGTACCTCTCCCAGTTCGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009806 GO:0009807 GO:0009987 GO:0010035 GO:0010038 GO:0016491 GO:0016651 GO:0019438 GO:0019748 GO:0042221 GO:0044237 GO:0044249 GO:0044550 GO:0046686 GO:0050664 GO:0050896 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NmrA

Protein Analysis

341

Amino Acids

37.4

Weight (kDa)

7.03

Isoelectric Point (pI)

27.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NmrA	PF05368	36 - 337	3e-99	NmrA-like family
Epimerase	PF01370	40 - 120	1.9e-08	NAD dependent epimerase/dehydratase family
NAD_binding_10	PF13460	44 - 185	1.8e-13	NAD(P)H-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005597)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39230
fragaria_vesca	FvH4_2g09110 FvH4_2g09120
malus_domestica	MD10G1073200.v1.1 MD10G1073500.v1.1
prunus_persica	Prupe.8G094500_v2.0.a1
pyrus_communis	pycom10g05770 pycom10g05780
rosa_chinensis	RchiOBHm_Chr6g0265001 RchiOBHm_Chr6g0265011
rosa_laevigata	RLG00000014216 RLG00000014221 RLG00000014224
rosa_multiflora	Rmu_sc0000546.1_g000080 Rmu_sc0002934.1_g000023
rosa_roxburghii	Rroxscaffold_175G00432080 Rroxscaffold_175G00432090 Rroxscaffold_7G00203100 Rroxscaffold_7G00203110
rosa_rugosa	Rorug06G0013800 Rorug06G0013900
rosa_samantha	Rh6AG136100 Rh6BG132900 Rh6BG133100 Rh6DG118700 Rh6DG118900
rosa_wichuraiana	Rw6G011720 Rw6G011730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	757
AasI	GACNNNNNNGTC	1 cut(s)	626
Acc36I	ACCTGC	1 cut(s)	757
Acc65I	GGTACC	1 cut(s)	683
AccB1I	GGYRCC	1 cut(s)	683
AccB7I	CCANNNNNTGG	1 cut(s)	466
AciI	CCGC	3 cut(s)	390, 508, 524
AclWI	GGATC	4 cut(s)	86, 99, 459, 724
AcoI	YGGCCR	4 cut(s)	181, 228, 525, 743
AcyI	GRCGYC	1 cut(s)	267
AdeI	CACNNNGTG	1 cut(s)	466
AfaI	GTAC	3 cut(s)	293, 685, 1007
AfiI	CCNNNNNNNGG	5 cut(s)	88, 313, 466, 817, 950
AgsI	TTSAA	4 cut(s)	256, 724, 769, 857
AhdI	GACNNNNNGTC	1 cut(s)	351
AjiI	CACGTC	1 cut(s)	448
AjnI	CCWGG	2 cut(s)	279, 614
AjuI	GAANNNNNNNTTGG	4 cut(s)	107, 139, 663, 695
AleI	CACNNNNGTG	2 cut(s)	545, 995
AluBI	AGCT	3 cut(s)	252, 602, 962
AluI	AGCT	3 cut(s)	252, 602, 962
Alw26I	GTCTC	1 cut(s)	912
AlwI	GGATC	4 cut(s)	86, 99, 459, 724
Ama87I	CYCGRG	1 cut(s)	812
AoxI	GGCC	7 cut(s)	165, 177, 181, 228, 258, 525, 743
Asp718I	GGTACC	1 cut(s)	683
AspLEI	GCGC	1 cut(s)	173
AspS9I	GGNCC	1 cut(s)	505
AsuC2I	CCSGG	5 cut(s)	89, 206, 227, 529, 597
AsuHPI	GGTGA	3 cut(s)	296, 349, 650
AvaI	CYCGRG	1 cut(s)	812
AvaII	GGWCC	1 cut(s)	505
BamHI	GGATCC	1 cut(s)	91
BanI	GGYRCC	1 cut(s)	683
BanII	GRGCYC	2 cut(s)	213, 945
BauI	CACGAG	1 cut(s)	299
BbvCI	CCTCAGC	1 cut(s)	864
BccI	CCATC	1 cut(s)	635
BceAI	ACGGC	1 cut(s)	498
BcgI	CGANNNNNNTGC	4 cut(s)	367, 401, 947, 981
BciT130I	CCWGG	2 cut(s)	281, 616
BclI	TGATCA	1 cut(s)	370
BcnI	CCSGG	5 cut(s)	89, 206, 227, 529, 597
BcoDI	GTCTC	1 cut(s)	912
BfoI	RGCGCY	1 cut(s)	174
BfuAI	ACCTGC	1 cut(s)	757
BisI	GCNGC	2 cut(s)	390, 525
BlsI	GCNGC	2 cut(s)	391, 526
Bme1390I	CCNGG	7 cut(s)	89, 206, 227, 281, 529, 597, 616
Bme18I	GGWCC	1 cut(s)	505
BmeRI	GACNNNNNGTC	1 cut(s)	351
BmeT110I	CYCGRG	1 cut(s)	812
BmgBI	CACGTC	1 cut(s)	448
BmgT120I	GGNCC	1 cut(s)	505
BmiI	GGNNCC	5 cut(s)	93, 210, 471, 685, 870
BmrFI	CCNGG	7 cut(s)	89, 206, 227, 281, 529, 597, 616
BmrI	ACTGGG	1 cut(s)	1009
BmuI	ACTGGG	1 cut(s)	1009
BplI	GAGNNNNNCTC	1 cut(s)	995
Bpu10I	CCTNAGC	1 cut(s)	864
BpuMI	CCSGG	5 cut(s)	89, 206, 227, 529, 597
BsaHI	GRCGYC	1 cut(s)	267
BsaI	GGTCTC	1 cut(s)	912
BsaJI	CCNNGG	5 cut(s)	174, 280, 501, 614, 615
BsaXI	ACNNNNNCTCC	6 cut(s)	63, 93, 595, 625, 746, 776
Bsc4I	CCNNNNNNNGG	5 cut(s)	88, 313, 466, 817, 950
Bse118I	RCCGGY	2 cut(s)	179, 404
Bse1I	ACTGG	3 cut(s)	142, 891, 1015
Bse3DI	GCAATG	1 cut(s)	415
BseBI	CCWGG	2 cut(s)	281, 616
BseDI	CCNNGG	5 cut(s)	174, 280, 501, 614, 615
BseGI	GGATG	3 cut(s)	712, 738, 1006
BseLI	CCNNNNNNNGG	5 cut(s)	88, 313, 466, 817, 950
BseMI	GCAATG	1 cut(s)	415
BseMII	CTCAG	2 cut(s)	855, 915
BseNI	ACTGG	3 cut(s)	142, 891, 1015
BseRI	GAGGAG	2 cut(s)	600, 848
BseX3I	CGGCCG	1 cut(s)	525
Bsh1285I	CGRYCG	1 cut(s)	528
BshFI	GGCC	7 cut(s)	167, 179, 183, 230, 260, 527, 745
BshNI	GGYRCC	1 cut(s)	683
BsiEI	CGRYCG	1 cut(s)	528
BsiHKCI	CYCGRG	1 cut(s)	812
BsiSI	CCGG	9 cut(s)	89, 180, 205, 227, 264, 405, 528, 597, 742
BslFI	GGGAC	2 cut(s)	632, 812
BslI	CCNNNNNNNGG	5 cut(s)	88, 313, 466, 817, 950
BsmAI	GTCTC	1 cut(s)	912
BsmFI	GGGAC	2 cut(s)	632, 812
BsnI	GGCC	7 cut(s)	167, 179, 183, 230, 260, 527, 745
Bso31I	GGTCTC	1 cut(s)	912
BsoBI	CYCGRG	1 cut(s)	812
Bsp1286I	GDGCHC	2 cut(s)	213, 945
Bsp143I	GATC	8 cut(s)	91, 286, 370, 381, 451, 657, 729, 936
BspACI	CCGC	3 cut(s)	390, 508, 524
BspANI	GGCC	7 cut(s)	167, 179, 183, 230, 260, 527, 745
BspCNI	CTCAG	2 cut(s)	856, 914
BspLI	GGNNCC	5 cut(s)	93, 210, 471, 685, 870
BspMI	ACCTGC	1 cut(s)	757
BspPI	GGATC	4 cut(s)	86, 99, 459, 724
BspT107I	GGYRCC	1 cut(s)	683
BspTNI	GGTCTC	1 cut(s)	912
BsrDI	GCAATG	1 cut(s)	415
BsrFI	RCCGGY	2 cut(s)	179, 404
BsrI	ACTGG	3 cut(s)	142, 891, 1015
BssAI	RCCGGY	2 cut(s)	179, 404
BssECI	CCNNGG	5 cut(s)	174, 280, 501, 614, 615
BssMI	GATC	8 cut(s)	91, 286, 370, 381, 451, 657, 729, 936
BssNI	GRCGYC	1 cut(s)	267
BssSI	CACGAG	1 cut(s)	299
BssT1I	CCWWGG	2 cut(s)	174, 501
Bst2BI	CACGAG	1 cut(s)	299
Bst2UI	CCWGG	2 cut(s)	281, 616
Bst4CI	ACNGT	2 cut(s)	349, 997
Bst6I	CTCTTC	2 cut(s)	128, 666
BstACI	GRCGYC	1 cut(s)	267
BstC8I	GCNNGC	4 cut(s)	169, 181, 406, 474
BstDEI	CTNAG	2 cut(s)	864, 901
BstENI	CCTNNNNNAGG	2 cut(s)	311, 815
BstF5I	GGATG	3 cut(s)	712, 738, 1006
BstH2I	RGCGCY	1 cut(s)	174
BstHHI	GCGC	1 cut(s)	173
BstKTI	GATC	8 cut(s)	94, 289, 373, 384, 454, 660, 732, 939
BstMAI	GTCTC	1 cut(s)	912
BstMBI	GATC	8 cut(s)	91, 286, 370, 381, 451, 657, 729, 936
BstMCI	CGRYCG	1 cut(s)	528
BstMWI	GCNNNNNNNGC	2 cut(s)	482, 497
BstNI	CCWGG	2 cut(s)	281, 616
BstSCI	CCNGG	7 cut(s)	87, 204, 225, 279, 527, 595, 614
BstX2I	RGATCY	2 cut(s)	91, 729
BstYI	RGATCY	2 cut(s)	91, 729
BstZI	CGGCCG	1 cut(s)	525
BsuRI	GGCC	7 cut(s)	167, 179, 183, 230, 260, 527, 745
BtgZI	GCGATG	1 cut(s)	370
BtrI	CACGTC	1 cut(s)	448
BtsCI	GGATG	3 cut(s)	712, 738, 1006
BtsIMutI	CAGTG	1 cut(s)	135
BveI	ACCTGC	1 cut(s)	757
Cac8I	GCNNGC	4 cut(s)	169, 181, 406, 474
CfoI	GCGC	1 cut(s)	173
Cfr10I	RCCGGY	2 cut(s)	179, 404
Cfr13I	GGNCC	1 cut(s)	505
CseI	GACGC	1 cut(s)	256
Csp6I	GTAC	3 cut(s)	292, 684, 1006
CviQI	GTAC	3 cut(s)	292, 684, 1006
DdeI	CTNAG	2 cut(s)	864, 901
DpnI	GATC	8 cut(s)	93, 288, 372, 383, 453, 659, 731, 938
DpnII	GATC	8 cut(s)	91, 286, 370, 381, 451, 657, 729, 936
DraIII	CACNNNGTG	1 cut(s)	466
DrdI	GACNNNNNNGTC	1 cut(s)	626
DriI	GACNNNNNGTC	1 cut(s)	351
DseDI	GACNNNNNNGTC	1 cut(s)	626
EaeI	YGGCCR	4 cut(s)	181, 228, 525, 743
EagI	CGGCCG	1 cut(s)	525
Eam1104I	CTCTTC	2 cut(s)	128, 666
Eam1105I	GACNNNNNGTC	1 cut(s)	351
EarI	CTCTTC	2 cut(s)	128, 666
EclXI	CGGCCG	1 cut(s)	525
Eco130I	CCWWGG	2 cut(s)	174, 501
Eco147I	AGGCCT	1 cut(s)	260
Eco24I	GRGCYC	2 cut(s)	213, 945
Eco31I	GGTCTC	1 cut(s)	912
Eco47I	GGWCC	1 cut(s)	505
Eco52I	CGGCCG	1 cut(s)	525
Eco88I	CYCGRG	1 cut(s)	812
EcoNI	CCTNNNNNAGG	2 cut(s)	311, 815
EcoRII	CCWGG	2 cut(s)	279, 614
EcoT14I	CCWWGG	2 cut(s)	174, 501
EcoT38I	GRGCYC	2 cut(s)	213, 945
ErhI	CCWWGG	2 cut(s)	174, 501
FaiI	YATR	4 cut(s)	158, 546, 690, 825
FalI	AAGNNNNNCTT	2 cut(s)	107, 139
FaqI	GGGAC	2 cut(s)	632, 812
FbaI	TGATCA	1 cut(s)	370
Fnu4HI	GCNGC	2 cut(s)	390, 525
FokI	GGATG	3 cut(s)	719, 725, 1013
FriOI	GRGCYC	2 cut(s)	213, 945
FseI	GGCCGGCC	1 cut(s)	183
Fsp4HI	GCNGC	2 cut(s)	390, 525
GlaI	GCGC	1 cut(s)	172
GluI	GCNGC	2 cut(s)	390, 525
HaeII	RGCGCY	1 cut(s)	174
HaeIII	GGCC	7 cut(s)	167, 179, 183, 230, 260, 527, 745
HapII	CCGG	9 cut(s)	89, 180, 205, 227, 264, 405, 528, 597, 742
HgaI	GACGC	1 cut(s)	256
HhaI	GCGC	1 cut(s)	173
Hin1I	GRCGYC	1 cut(s)	267
Hin6I	GCGC	1 cut(s)	171
HinP1I	GCGC	1 cut(s)	171
HinfI	GANTC	4 cut(s)	118, 456, 532, 954
HpaII	CCGG	9 cut(s)	89, 180, 205, 227, 264, 405, 528, 597, 742
HphI	GGTGA	3 cut(s)	296, 349, 650
Hpy166II	GTNNAC	2 cut(s)	18, 460
Hpy188I	TCNGA	4 cut(s)	71, 131, 433, 588
Hpy188III	TCNNGA	3 cut(s)	415, 814, 857
Hpy8I	GTNNAC	2 cut(s)	18, 460
Hpy99I	CGWCG	2 cut(s)	349, 449
HpyAV	CCTTC	8 cut(s)	70, 202, 307, 438, 547, 769, 775, 811
HpyCH4III	ACNGT	2 cut(s)	349, 997
HpyCH4IV	ACGT	1 cut(s)	447
HpyCH4V	TGCA	1 cut(s)	44
HpyF10VI	GCNNNNNNNGC	2 cut(s)	482, 497
HpyF3I	CTNAG	2 cut(s)	864, 901
HpySE526I	ACGT	1 cut(s)	447
Hsp92I	GRCGYC	1 cut(s)	267
HspAI	GCGC	1 cut(s)	171
KpnI	GGTACC	1 cut(s)	687
KroI	GCCGGC	2 cut(s)	179, 404
KroNI	GCCGGC	2 cut(s)	181, 406
Ksp22I	TGATCA	1 cut(s)	370
Kzo9I	GATC	8 cut(s)	91, 286, 370, 381, 451, 657, 729, 936
LmnI	GCTCC	5 cut(s)	208, 469, 599, 613, 835
MaeII	ACGT	1 cut(s)	447
MaeIII	GTNAC	3 cut(s)	353, 569, 896
MalI	GATC	8 cut(s)	93, 288, 372, 383, 453, 659, 731, 938
MboI	GATC	8 cut(s)	91, 286, 370, 381, 451, 657, 729, 936
MboII	GAAGA	4 cut(s)	115, 683, 805, 808
MflI	RGATCY	2 cut(s)	91, 729
MhlI	GDGCHC	2 cut(s)	213, 945
MluCI	AATT	1 cut(s)	271
MlyI	GAGTC	2 cut(s)	465, 963
MmeI	TCCRAC	2 cut(s)	94, 246
MroNI	GCCGGC	2 cut(s)	179, 404
MseI	TTAA	4 cut(s)	321, 396, 663, 696
MslI	CAYNNNNRTG	2 cut(s)	545, 995
MspI	CCGG	9 cut(s)	89, 180, 205, 227, 264, 405, 528, 597, 742
MspR9I	CCNGG	7 cut(s)	89, 206, 227, 281, 529, 597, 616
MvaI	CCWGG	2 cut(s)	281, 616
MwoI	GCNNNNNNNGC	2 cut(s)	482, 497
NaeI	GCCGGC	2 cut(s)	181, 406
NciI	CCSGG	5 cut(s)	89, 206, 227, 529, 597
NdeII	GATC	8 cut(s)	91, 286, 370, 381, 451, 657, 729, 936
NgoMIV	GCCGGC	2 cut(s)	179, 404
NlaIV	GGNNCC	5 cut(s)	93, 210, 471, 685, 870
NmuCI	GTSAC	2 cut(s)	353, 896
OliI	CACNNNNGTG	2 cut(s)	545, 995
PaeR7I	CTCGAG	1 cut(s)	812
PaqCI	CACCTGC	1 cut(s)	757
PasI	CCCWGGG	1 cut(s)	615
PceI	AGGCCT	1 cut(s)	260
PdiI	GCCGGC	2 cut(s)	181, 406
PfeI	GAWTC	2 cut(s)	118, 532
PflFI	GACNNNGTC	1 cut(s)	623
PflMI	CCANNNNNTGG	1 cut(s)	466
PfoI	TCCNGGA	2 cut(s)	87, 204
PkrI	GCNGC	2 cut(s)	391, 526
PleI	GAGTC	2 cut(s)	464, 962
PpsI	GAGTC	2 cut(s)	464, 962
Psp6I	CCWGG	2 cut(s)	279, 614
PspGI	CCWGG	2 cut(s)	279, 614
PspN4I	GGNNCC	5 cut(s)	93, 210, 471, 685, 870
PspPI	GGNCC	1 cut(s)	505
PsuI	RGATCY	2 cut(s)	91, 729
PsyI	GACNNNGTC	1 cut(s)	623
RigI	GGCCGGCC	1 cut(s)	183
RsaI	GTAC	3 cut(s)	293, 685, 1007
RsaNI	GTAC	3 cut(s)	292, 684, 1006
RseI	CAYNNNNRTG	2 cut(s)	545, 995
SaqAI	TTAA	4 cut(s)	321, 396, 663, 696
SatI	GCNGC	2 cut(s)	390, 525
Sau3AI	GATC	8 cut(s)	91, 286, 370, 381, 451, 657, 729, 936
Sau96I	GGNCC	1 cut(s)	505
SchI	GAGTC	2 cut(s)	465, 963
ScrFI	CCNGG	7 cut(s)	89, 206, 227, 281, 529, 597, 616
SduI	GDGCHC	2 cut(s)	213, 945
Sfr274I	CTCGAG	1 cut(s)	812
SinI	GGWCC	1 cut(s)	505
SlaI	CTCGAG	1 cut(s)	812
SmiMI	CAYNNNNRTG	2 cut(s)	545, 995
SmlI	CTYRAG	1 cut(s)	812
SmoI	CTYRAG	1 cut(s)	812
Sse9I	AATT	1 cut(s)	271
SseBI	AGGCCT	1 cut(s)	260
SsiI	CCGC	3 cut(s)	390, 508, 524
StuI	AGGCCT	1 cut(s)	260
StyD4I	CCNGG	7 cut(s)	87, 204, 225, 279, 527, 595, 614
StyI	CCWWGG	2 cut(s)	174, 501
TaaI	ACNGT	2 cut(s)	349, 997
TaiI	ACGT	1 cut(s)	450
TaqI	TCGA	8 cut(s)	162, 246, 330, 344, 454, 813, 939, 957
TaqII	GACCGA	1 cut(s)	884
TasI	AATT	1 cut(s)	271
TauI	GCSGC	2 cut(s)	392, 527
TfiI	GAWTC	2 cut(s)	118, 532
Tru1I	TTAA	4 cut(s)	321, 396, 663, 696
Tru9I	TTAA	4 cut(s)	321, 396, 663, 696
TscAI	CASTG	1 cut(s)	142
TseFI	GTSAC	2 cut(s)	353, 896
Tsp45I	GTSAC	2 cut(s)	353, 896
TspDTI	ATGAA	4 cut(s)	27, 52, 115, 145
TspRI	CASTG	1 cut(s)	142
Tth111I	GACNNNGTC	1 cut(s)	623
Van91I	CCANNNNNTGG	1 cut(s)	466
VpaK11BI	GGWCC	1 cut(s)	505
XagI	CCTNNNNNAGG	2 cut(s)	311, 815
XcmI	CCANNNNNNNNNTGG	1 cut(s)	700
XhoI	CTCGAG	1 cut(s)	812

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.