Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006634

Physical Location & Seq

Genomic Coordinates Forward (+)

1145431 .. 1147781

Gene Structure 2351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G04170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGTCAGGATATCCTCCGACTAGCCAAGGTTACGGTTACGGTTACGGCGGCGGTAATCAACCTCCACCACCTCAACCACCTTACTCTTCCGGCGGAAACAATCCTCCCTACGGATCATCAACAACCTCTTCTCCTTACGCTGTACCCTACGGCGCATCTAAACCACAATCATCATCCTCTTCTGCGCCGACGTACGGATCTTCATCATACGGAGCACCGCCTCCTTCAGCTCCGTACGCGCCTTCTCCAGGAGACTACAACAAGCCGCCAAAGGAGAAACCATACGGAGGAGGCTACGGAGCTCCACCACCGTCTGGATCTTCAGATTACGGAAGTTACGGTGCTGGACCTCGTCCGTCGCAGCCGTCTGGGCACGGTGGAGGATACGGAGCTACTCCACCGCATGGGGTTTCTGACTATGGAAGTTACGGTGGTGCTCCACCTCGTCCAGCGTCTTCTGGTCACGGTGGCGGATACGGAGGTTATCCTCCGCAAGCCTCTTATGGAAGTCCTTTTGCTTCTCTGATTCCGTCAGGTTTTGCTCCGGGGACAGATCCGAATATAGTGGCTTGCTTTCAGGCTGCAGATCAAGATGGTAGTGGCTTTATTGATGATAAGGAGCTTCAAGGAGCTCTCTCTTCTTATCAACAGAGATTCAGTATGAGAACTGTTCATCTTCTTATGTATCTATTCACCAATAGCAATGCTATGAAAATCGGACCTAAGGAGTTTACTGCACTTTTCTACAGTCTTCAGAACTGGAGGTCCATTTTTGAGAGGTCTGATAAGGACAGGAGTGGAAGAATAGATGTGAATGAGCTGAGAGATGCGCTTTTGAGCCTTGGGTTTTCGGTTTCTCCTGTGGTTTTGGATCTGCTGGTTTCCAAGTTTGACAAAAGCGGAGGCAAGAACAGGGCTATCGAATATGACAATTTCATTGAGTGCTGTCTCACTGTTAAGGGGCTGACAGAGAAGTTCAAGGAGAAGGACACAGCATACTCAGGCTCAGCTACTTTCAACTACGAAAGCTTCATGCTCACCGTCCTCCCCTTCCTCATCGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0004198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0016787 GO:0019538 GO:0043170 GO:0044238 GO:0044424 GO:0044464 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6

Protein Analysis

354

Amino Acids

37.11

Weight (kDa)

6.43

Isoelectric Point (pI)

57.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	254 - 314	1.4e-07	EF-hand domain pair
EF-hand_6	PF13405	254 - 282	5.1e-06	EF-hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006634)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10300 AT3G10300 AT3G10300 AT3G10300 AT3G10300 AT3G10300 AT5G04170
fragaria_vesca	FvH4_6g24530
malus_domestica	MD12G1082900.v1.1 MD14G1061500.v1.1 MD14G1077400.v1.1 MD14G1077700.v1.1
prunus_persica	Prupe.7G053100_v2.0.a1
pyrus_communis	pycom12g06980 pycom14g06630 pycom14g06640
rosa_chinensis	RchiOBHm_Chr3g0483641
rosa_laevigata	RLG00000023262
rosa_multiflora	Rmu_sc0000555.1_g000008
rosa_roxburghii	Rroxscaffold_6G00398160
rosa_rugosa	Rorug03G0207700
rosa_samantha	Rh3AG256100 Rh3BG292800 Rh3CG290500 Rh3DG286400
rosa_wichuraiana	Rw3G023130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	314, 404
AccII	CGCG	1 cut(s)	239
AciI	CCGC	9 cut(s)	48, 51, 93, 218, 266, 401, 471, 491, 900
AclWI	GGATC	5 cut(s)	121, 205, 325, 548, 879
AcuI	CTGAAG	3 cut(s)	210, 306, 737
AfaI	GTAC	3 cut(s)	144, 194, 236
AfiI	CCNNNNNNNGG	6 cut(s)	110, 194, 248, 287, 314, 404
AgsI	TTSAA	3 cut(s)	626, 979, 1018
AjnI	CCWGG	1 cut(s)	247
AloI	GAACNNNNNNTCC	2 cut(s)	749, 781
AluBI	AGCT	8 cut(s)	230, 302, 392, 622, 632, 820, 1010, 1029
AluI	AGCT	8 cut(s)	230, 302, 392, 622, 632, 820, 1010, 1029
Alw21I	GWGCWC	4 cut(s)	217, 304, 439, 634
Alw26I	GTCTC	2 cut(s)	246, 953
AlwI	GGATC	5 cut(s)	121, 205, 325, 548, 879
ApeKI	GCWGC	2 cut(s)	361, 581
AspLEI	GCGC	4 cut(s)	155, 187, 241, 832
AspS9I	GGNCC	3 cut(s)	347, 719, 765
AsuC2I	CCSGG	1 cut(s)	546
AsuHPI	GGTGA	2 cut(s)	685, 1030
AvaII	GGWCC	3 cut(s)	347, 719, 765
AxyI	CCTNAGG	1 cut(s)	723
BaeGI	GKGCMC	1 cut(s)	375
BaeI	ACNNNNGTAYC	2 cut(s)	466, 499
BanII	GRGCYC	2 cut(s)	304, 634
BbsI	GAAGAC	2 cut(s)	447, 743
Bbv12I	GWGCWC	4 cut(s)	217, 304, 439, 634
BbvI	GCAGC	2 cut(s)	373, 568
BccI	CCATC	1 cut(s)	587
BceAI	ACGGC	3 cut(s)	61, 166, 349
BciT130I	CCWGG	1 cut(s)	249
BciVI	GTATCC	2 cut(s)	377, 467
BcnI	CCSGG	1 cut(s)	546
BcoDI	GTCTC	2 cut(s)	246, 953
BfaI	CTAG	1 cut(s)	21
BfmI	CTRYAG	2 cut(s)	582, 745
BfuI	GTATCC	2 cut(s)	377, 467
BglI	GCCNNNNNGGC	1 cut(s)	370
BisI	GCNGC	4 cut(s)	49, 266, 362, 582
BlpI	GCTNAGC	1 cut(s)	1006
BlsI	GCNGC	4 cut(s)	50, 267, 363, 583
Bme1390I	CCNGG	2 cut(s)	249, 546
Bme18I	GGWCC	3 cut(s)	347, 719, 765
BmgT120I	GGNCC	3 cut(s)	347, 719, 765
BmrFI	CCNGG	2 cut(s)	249, 546
BmsI	GCATC	2 cut(s)	164, 817
BpiI	GAAGAC	2 cut(s)	447, 743
BpmI	CTGGAG	2 cut(s)	231, 781
Bpu1102I	GCTNAGC	1 cut(s)	1006
BpuMI	CCSGG	1 cut(s)	546
BsaBI	GATNNNNATC	1 cut(s)	202
BsaJI	CCNNGG	3 cut(s)	25, 545, 841
BsaXI	ACNNNNNCTCC	2 cut(s)	115, 145
Bsc4I	CCNNNNNNNGG	6 cut(s)	110, 194, 248, 287, 314, 404
Bse1I	ACTGG	1 cut(s)	764
Bse21I	CCTNAGG	1 cut(s)	723
Bse3DI	GCAATG	1 cut(s)	709
Bse8I	GATNNNNATC	1 cut(s)	202
BseBI	CCWGG	1 cut(s)	249
BseDI	CCNNGG	3 cut(s)	25, 545, 841
BseGI	GGATG	1 cut(s)	173
BseJI	GATNNNNATC	1 cut(s)	202
BseLI	CCNNNNNNNGG	6 cut(s)	110, 194, 248, 287, 314, 404
BseMI	GCAATG	1 cut(s)	709
BseMII	CTCAG	3 cut(s)	812, 1014, 1020
BseNI	ACTGG	1 cut(s)	764
BseRI	GAGGAG	1 cut(s)	303
BseSI	GKGCMC	1 cut(s)	375
BseXI	GCAGC	2 cut(s)	373, 568
BsgI	GTGCAG	1 cut(s)	720
Bsh1236I	CGCG	1 cut(s)	239
BsiHKAI	GWGCWC	4 cut(s)	217, 304, 439, 634
BsiSI	CCGG	2 cut(s)	90, 545
BsiWI	CGTACG	2 cut(s)	192, 234
BslFI	GGGAC	1 cut(s)	562
BslI	CCNNNNNNNGG	6 cut(s)	110, 194, 248, 287, 314, 404
BsmAI	GTCTC	2 cut(s)	246, 953
BsmFI	GGGAC	1 cut(s)	562
Bsp1286I	GDGCHC	5 cut(s)	217, 304, 375, 439, 634
Bsp143I	GATC	6 cut(s)	113, 197, 317, 553, 586, 871
Bsp1720I	GCTNAGC	1 cut(s)	1006
BspACI	CCGC	9 cut(s)	48, 51, 93, 218, 266, 401, 471, 491, 900
BspCNI	CTCAG	3 cut(s)	813, 1013, 1019
BspFNI	CGCG	1 cut(s)	239
BspMAI	CTGCAG	1 cut(s)	586
BspPI	GGATC	5 cut(s)	121, 205, 325, 548, 879
BsrDI	GCAATG	1 cut(s)	709
BsrI	ACTGG	1 cut(s)	764
BssECI	CCNNGG	3 cut(s)	25, 545, 841
BssMI	GATC	6 cut(s)	113, 197, 317, 553, 586, 871
BssT1I	CCWWGG	2 cut(s)	25, 841
Bst2UI	CCWGG	1 cut(s)	249
Bst6I	CTCTTC	4 cut(s)	91, 133, 184, 643
BstC8I	GCNNGC	2 cut(s)	495, 571
BstDEI	CTNAG	4 cut(s)	723, 821, 1000, 1006
BstENI	CCTNNNNNAGG	1 cut(s)	246
BstF5I	GGATG	1 cut(s)	173
BstFNI	CGCG	1 cut(s)	239
BstHHI	GCGC	4 cut(s)	155, 187, 241, 832
BstKTI	GATC	6 cut(s)	116, 200, 320, 556, 589, 874
BstMAI	GTCTC	2 cut(s)	246, 953
BstMBI	GATC	6 cut(s)	113, 197, 317, 553, 586, 871
BstMWI	GCNNNNNNNGC	2 cut(s)	236, 370
BstNI	CCWGG	1 cut(s)	249
BstSCI	CCNGG	2 cut(s)	247, 544
BstSFI	CTRYAG	2 cut(s)	582, 745
BstSLI	GKGCMC	1 cut(s)	375
BstUI	CGCG	1 cut(s)	239
BstV1I	GCAGC	2 cut(s)	373, 568
BstV2I	GAAGAC	2 cut(s)	447, 743
BstX2I	RGATCY	4 cut(s)	197, 317, 553, 871
BstYI	RGATCY	4 cut(s)	197, 317, 553, 871
Bsu36I	CCTNAGG	1 cut(s)	723
BsuI	GTATCC	2 cut(s)	377, 467
BtgZI	GCGATG	1 cut(s)	1042
BtsCI	GGATG	1 cut(s)	173
BtsIMutI	CAGTG	1 cut(s)	951
Cac8I	GCNNGC	2 cut(s)	495, 571
CfoI	GCGC	4 cut(s)	155, 187, 241, 832
Cfr13I	GGNCC	3 cut(s)	347, 719, 765
CseI	GACGC	1 cut(s)	441
Csp6I	GTAC	3 cut(s)	143, 193, 235
CviAII	CATG	2 cut(s)	404, 1033
CviQI	GTAC	3 cut(s)	143, 193, 235
DdeI	CTNAG	4 cut(s)	723, 821, 1000, 1006
DpnI	GATC	6 cut(s)	115, 199, 319, 555, 588, 873
DpnII	GATC	6 cut(s)	113, 197, 317, 553, 586, 871
Eam1104I	CTCTTC	4 cut(s)	91, 133, 184, 643
EarI	CTCTTC	4 cut(s)	91, 133, 184, 643
EciI	GGCGGA	2 cut(s)	108, 486
Ecl136II	GAGCTC	2 cut(s)	302, 632
Eco130I	CCWWGG	2 cut(s)	25, 841
Eco24I	GRGCYC	2 cut(s)	304, 634
Eco32I	GATATC	1 cut(s)	11
Eco47I	GGWCC	3 cut(s)	347, 719, 765
Eco53kI	GAGCTC	2 cut(s)	302, 632
Eco57I	CTGAAG	3 cut(s)	210, 306, 737
Eco81I	CCTNAGG	1 cut(s)	723
EcoICRI	GAGCTC	2 cut(s)	302, 632
EcoNI	CCTNNNNNAGG	1 cut(s)	246
EcoRII	CCWGG	1 cut(s)	247
EcoRV	GATATC	1 cut(s)	11
EcoT14I	CCWWGG	2 cut(s)	25, 841
EcoT38I	GRGCYC	2 cut(s)	304, 634
ErhI	CCWWGG	2 cut(s)	25, 841
FaeI	CATG	2 cut(s)	407, 1036
FaqI	GGGAC	1 cut(s)	562
FatI	CATG	2 cut(s)	403, 1032
Fnu4HI	GCNGC	4 cut(s)	49, 266, 362, 582
FokI	GGATG	1 cut(s)	160
FriOI	GRGCYC	2 cut(s)	304, 634
Fsp4HI	GCNGC	4 cut(s)	49, 266, 362, 582
FspBI	CTAG	1 cut(s)	21
GlaI	GCGC	4 cut(s)	154, 186, 240, 831
GluI	GCNGC	4 cut(s)	49, 266, 362, 582
GsuI	CTGGAG	2 cut(s)	231, 781
HapII	CCGG	2 cut(s)	90, 545
HgaI	GACGC	1 cut(s)	441
HhaI	GCGC	4 cut(s)	155, 187, 241, 832
Hin1II	CATG	2 cut(s)	407, 1036
Hin6I	GCGC	4 cut(s)	153, 185, 239, 830
HinP1I	GCGC	4 cut(s)	153, 185, 239, 830
HindIII	AAGCTT	1 cut(s)	1027
HinfI	GANTC	2 cut(s)	526, 654
HpaII	CCGG	2 cut(s)	90, 545
HphI	GGTGA	2 cut(s)	685, 1030
Hpy166II	GTNNAC	1 cut(s)	732
Hpy188I	TCNGA	8 cut(s)	18, 325, 415, 525, 558, 719, 756, 784
Hpy188III	TCNNGA	3 cut(s)	6, 315, 590
Hpy8I	GTNNAC	1 cut(s)	732
Hpy99I	CGWCG	2 cut(s)	193, 361
HpyAV	CCTTC	4 cut(s)	234, 252, 979, 1060
HpyCH4IV	ACGT	1 cut(s)	191
HpyCH4V	TGCA	2 cut(s)	584, 737
HpyF10VI	GCNNNNNNNGC	2 cut(s)	236, 370
HpyF3I	CTNAG	4 cut(s)	723, 821, 1000, 1006
HpySE526I	ACGT	1 cut(s)	191
Hsp92II	CATG	2 cut(s)	407, 1036
HspAI	GCGC	4 cut(s)	153, 185, 239, 830
Kzo9I	GATC	6 cut(s)	113, 197, 317, 553, 586, 871
LmnI	GCTCC	9 cut(s)	212, 235, 299, 307, 389, 442, 547, 619, 629
Lsp1109I	GCAGC	2 cut(s)	373, 568
LweI	GCATC	2 cut(s)	164, 817
MaeI	CTAG	1 cut(s)	21
MaeII	ACGT	1 cut(s)	191
MaeIII	GTNAC	6 cut(s)	29, 35, 41, 335, 425, 461
MalI	GATC	6 cut(s)	115, 199, 319, 555, 588, 873
MboI	GATC	6 cut(s)	113, 197, 317, 553, 586, 871
MflI	RGATCY	4 cut(s)	197, 317, 553, 871
MhlI	GDGCHC	5 cut(s)	217, 304, 375, 439, 634
MluCI	AATT	1 cut(s)	931
MmeI	TCCRAC	1 cut(s)	41
MseI	TTAA	1 cut(s)	957
MspI	CCGG	2 cut(s)	90, 545
MspR9I	CCNGG	2 cut(s)	249, 546
MvaI	CCWGG	1 cut(s)	249
MvnI	CGCG	1 cut(s)	239
MwoI	GCNNNNNNNGC	2 cut(s)	236, 370
NciI	CCSGG	1 cut(s)	546
NdeII	GATC	6 cut(s)	113, 197, 317, 553, 586, 871
NlaIII	CATG	2 cut(s)	407, 1036
NmuCI	GTSAC	1 cut(s)	461
PfeI	GAWTC	2 cut(s)	526, 654
Pfl23II	CGTACG	2 cut(s)	192, 234
PflFI	GACNNNGTC	1 cut(s)	351
PflMI	CCANNNNNTGG	2 cut(s)	314, 404
PfoI	TCCNGGA	1 cut(s)	247
PkrI	GCNGC	4 cut(s)	50, 267, 363, 583
Psp124BI	GAGCTC	2 cut(s)	304, 634
Psp6I	CCWGG	1 cut(s)	247
PspGI	CCWGG	1 cut(s)	247
PspLI	CGTACG	2 cut(s)	192, 234
PspPI	GGNCC	3 cut(s)	347, 719, 765
PstI	CTGCAG	1 cut(s)	586
PsuI	RGATCY	4 cut(s)	197, 317, 553, 871
PsyI	GACNNNGTC	1 cut(s)	351
RsaI	GTAC	3 cut(s)	144, 194, 236
RsaNI	GTAC	3 cut(s)	143, 193, 235
SacI	GAGCTC	2 cut(s)	304, 634
SaqAI	TTAA	1 cut(s)	957
SatI	GCNGC	4 cut(s)	49, 266, 362, 582
Sau3AI	GATC	6 cut(s)	113, 197, 317, 553, 586, 871
Sau96I	GGNCC	3 cut(s)	347, 719, 765
ScrFI	CCNGG	2 cut(s)	249, 546
SduI	GDGCHC	5 cut(s)	217, 304, 375, 439, 634
SfaNI	GCATC	2 cut(s)	164, 817
SfcI	CTRYAG	2 cut(s)	582, 745
SinI	GGWCC	3 cut(s)	347, 719, 765
Sse9I	AATT	1 cut(s)	931
SsiI	CCGC	9 cut(s)	48, 51, 93, 218, 266, 401, 471, 491, 900
SspMI	CTAG	1 cut(s)	21
SstI	GAGCTC	2 cut(s)	304, 634
StyD4I	CCNGG	2 cut(s)	247, 544
StyI	CCWWGG	2 cut(s)	25, 841
TaiI	ACGT	1 cut(s)	194
TaqI	TCGA	1 cut(s)	921
TasI	AATT	1 cut(s)	931
TauI	GCSGC	2 cut(s)	51, 268
TfiI	GAWTC	2 cut(s)	526, 654
Tru1I	TTAA	1 cut(s)	957
Tru9I	TTAA	1 cut(s)	957
TscAI	CASTG	1 cut(s)	958
TseFI	GTSAC	1 cut(s)	461
TseI	GCWGC	2 cut(s)	361, 581
Tsp45I	GTSAC	1 cut(s)	461
TspDTI	ATGAA	5 cut(s)	192, 662, 725, 925, 1021
TspRI	CASTG	1 cut(s)	958
Tth111I	GACNNNGTC	1 cut(s)	351
Van91I	CCANNNNNTGG	2 cut(s)	314, 404
VpaK11BI	GGWCC	3 cut(s)	347, 719, 765
XagI	CCTNNNNNAGG	1 cut(s)	246
XspI	CTAG	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.