RchiOBHm_Chr3g0483641

calcium-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0006634
Physical Location & Seq
Reverse (-)
29937571 .. 29939995
2425 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44839

Sequence Viewer

Length: 840 bp
ATGTCCGGATACCCACAACCACCGCCAAACTACGGCTACGGCAGCGCCCCTCCGCCCGGCAAACCCTACGCCGCCTCCCCTCCCTACGGCGCACCTCCTCCCGCCCAACACCAACACCAACAACACCAGGCCTCCCCCTACGGAGCTCCCTCCGCGCCTCCCTACGCCGCTCCTCCTCACGGAAGCAGCGGCGGCAGCGCTGGATACGGTGCTCCTTACGCGGCTCCTCCACAACACGGCGGCGGCGGATACCCGACCCCGGCCCCGGCTCCGGGCTACGGAAGCCCCTTCGGTGCCCTGGTGCCGTCGTCGTTCCCGCCCGGCACGGACCCGAACGTGGTGGCCTGCTTCCAGATTGCTGATCAGGACGGCAGCGGGCTCATCGACGACAAGGAGTTGCAGAAGGCGCTCTCGTCGTACAATCAGAGCTTCAGCTTGAGGACTGTTCATCTTCTCATGTATCTCTTCACCCAGACCAACACCAGAAAGATCGGGCCTAAGGAATTCACCGCGGTGTTTTACAGTCTTCAGAACTGGAGGGGAATATTTGAGAAGTTCGACAGAGACAGGAGTGGGAAAATTGACTCAAATGAGTTGAGAGATGCATTGGGGAGTCTGGGATTTTCTGTCTCACCTGCGGTTTTGGATTTGCTGGTGTCCAAGTTTGATAAGACTGGAGGCCACATGAAGGCCATTGAATATGATAATTTCATCGAGTGTTGTCTCACAGTTAAGGGATTAACTGAGAAGTTTAAGGAGAAGGACAAAGCATACACTGGTCATGCAACTTTTAGTTACGAGGACTTCATGTTGATTGTTTTGCCTTTCCTCATCGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
EF-hand_1 EF-hand_5 EF-hand_6

Protein Analysis

279

Amino Acids

29.87

Weight (kDa)

6.43

Isoelectric Point (pI)

56.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EF-hand_7 PF13499 179 - 239 1.6e-08 EF-hand domain pair
EF-hand_6 PF13405 179 - 207 2.2e-07 EF-hand domain
EF-hand_1 PF00036 180 - 205 2.1e-06 EF hand domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 643
Acc36I ACCTGC 1 cut(s) 643
AccB1I GGYRCC 2 cut(s) 293, 301
AccBSI CCGCTC 1 cut(s) 170
AccII CGCG 3 cut(s) 155, 221, 512
AccIII TCCGGA 1 cut(s) 5
AcsI RAATTY 1 cut(s) 503
AcuI CTGAAG 2 cut(s) 415, 512
AfaI GTAC 1 cut(s) 419
AfeI AGCGCT 1 cut(s) 199
AgsI TTSAA 1 cut(s) 698
AjnI CCWGG 2 cut(s) 126, 297
AleI CACNNNNGTG 1 cut(s) 512
AluBI AGCT 3 cut(s) 146, 429, 435
AluI AGCT 3 cut(s) 146, 429, 435
Alw21I GWGCWC 2 cut(s) 148, 214
Alw26I GTCTC 3 cut(s) 558, 634, 728
Aor13HI TCCGGA 1 cut(s) 5
Aor51HI AGCGCT 1 cut(s) 199
AoxI GGCC 6 cut(s) 129, 261, 342, 494, 679, 690
ApeKI GCWGC 4 cut(s) 42, 186, 195, 372
ApoI RAATTY 1 cut(s) 503
AspLEI GCGC 5 cut(s) 47, 92, 157, 200, 409
AspS9I GGNCC 3 cut(s) 262, 328, 494
AsuC2I CCSGG 5 cut(s) 57, 260, 266, 273, 321
AsuHPI GGTGA 3 cut(s) 460, 499, 624
AvaII GGWCC 1 cut(s) 328
AxyI CCTNAGG 1 cut(s) 498
BaeGI GKGCMC 1 cut(s) 298
BanI GGYRCC 2 cut(s) 293, 301
BanII GRGCYC 2 cut(s) 148, 381
BbsI GAAGAC 1 cut(s) 518
Bbv12I GWGCWC 2 cut(s) 148, 214
BbvI GCAGC 4 cut(s) 54, 198, 207, 384
BceAI ACGGC 6 cut(s) 49, 55, 103, 253, 289, 385
BciT130I CCWGG 2 cut(s) 128, 299
BciVI GTATCC 2 cut(s) 197, 242
BclI TGATCA 1 cut(s) 361
BcnI CCSGG 5 cut(s) 57, 260, 266, 273, 321
BcoDI GTCTC 3 cut(s) 558, 634, 728
BfoI RGCGCY 3 cut(s) 48, 201, 410
BfuAI ACCTGC 1 cut(s) 643
BfuI GTATCC 2 cut(s) 197, 242
Bme1390I CCNGG 7 cut(s) 57, 128, 260, 266, 273, 299, 321
Bme18I GGWCC 1 cut(s) 328
BmgT120I GGNCC 3 cut(s) 262, 328, 494
BmiI GGNNCC 6 cut(s) 225, 264, 270, 295, 303, 330
BmrFI CCNGG 7 cut(s) 57, 128, 260, 266, 273, 299, 321
BmsI GCATC 1 cut(s) 592
BpiI GAAGAC 1 cut(s) 518
BpmI CTGGAG 2 cut(s) 556, 696
BpuEI CTTGAG 1 cut(s) 457
BpuMI CCSGG 5 cut(s) 57, 260, 266, 273, 321
BsaJI CCNNGG 4 cut(s) 258, 264, 297, 510
BsaWI WCCGGW 1 cut(s) 5
BsaXI ACNNNNNCTCC 4 cut(s) 59, 89, 116, 146
Bse1I ACTGG 3 cut(s) 539, 679, 781
Bse21I CCTNAGG 1 cut(s) 498
BseAI TCCGGA 1 cut(s) 5
BseBI CCWGG 2 cut(s) 128, 299
BseDI CCNNGG 4 cut(s) 258, 264, 297, 510
BseMII CTCAG 1 cut(s) 735
BseNI ACTGG 3 cut(s) 539, 679, 781
BseRI GAGGAG 4 cut(s) 87, 162, 165, 216
BseSI GKGCMC 1 cut(s) 298
BseXI GCAGC 4 cut(s) 54, 198, 207, 384
Bsh1236I CGCG 3 cut(s) 155, 221, 512
BshFI GGCC 6 cut(s) 131, 263, 344, 496, 681, 692
BshNI GGYRCC 2 cut(s) 293, 301
BsiHKAI GWGCWC 2 cut(s) 148, 214
BsiSI CCGG 6 cut(s) 6, 57, 260, 266, 272, 321
BsmAI GTCTC 3 cut(s) 558, 634, 728
BsnI GGCC 6 cut(s) 131, 263, 344, 496, 681, 692
Bsp1286I GDGCHC 4 cut(s) 148, 214, 298, 381
Bsp13I TCCGGA 1 cut(s) 5
Bsp143I GATC 2 cut(s) 361, 489
BspANI GGCC 6 cut(s) 131, 263, 344, 496, 681, 692
BspCNI CTCAG 1 cut(s) 736
BspEI TCCGGA 1 cut(s) 5
BspFNI CGCG 3 cut(s) 155, 221, 512
BspLI GGNNCC 6 cut(s) 225, 264, 270, 295, 303, 330
BspMI ACCTGC 1 cut(s) 643
BspT107I GGYRCC 2 cut(s) 293, 301
BsrBI CCGCTC 1 cut(s) 170
BsrI ACTGG 3 cut(s) 539, 679, 781
BssECI CCNNGG 4 cut(s) 258, 264, 297, 510
BssMI GATC 2 cut(s) 361, 489
Bst2UI CCWGG 2 cut(s) 128, 299
Bst4CI ACNGT 4 cut(s) 209, 445, 524, 730
Bst6I CTCTTC 1 cut(s) 470
BstC8I GCNNGC 2 cut(s) 346, 377
BstDEI CTNAG 2 cut(s) 498, 744
BstDSI CCRYGG 1 cut(s) 510
BstFNI CGCG 3 cut(s) 155, 221, 512
BstH2I RGCGCY 3 cut(s) 48, 201, 410
BstHHI GCGC 5 cut(s) 47, 92, 157, 200, 409
BstKTI GATC 2 cut(s) 364, 492
BstMAI GTCTC 3 cut(s) 558, 634, 728
BstMBI GATC 2 cut(s) 361, 489
BstMWI GCNNNNNNNGC 7 cut(s) 42, 152, 192, 195, 218, 282, 406
BstNI CCWGG 2 cut(s) 128, 299
BstSCI CCNGG 7 cut(s) 55, 126, 258, 264, 271, 297, 319
BstSLI GKGCMC 1 cut(s) 298
BstUI CGCG 3 cut(s) 155, 221, 512
BstV1I GCAGC 4 cut(s) 54, 198, 207, 384
BstV2I GAAGAC 1 cut(s) 518
Bsu36I CCTNAGG 1 cut(s) 498
BsuI GTATCC 2 cut(s) 197, 242
BsuRI GGCC 6 cut(s) 131, 263, 344, 496, 681, 692
BtgI CCRYGG 1 cut(s) 510
BtgZI GCGATG 1 cut(s) 817
BtsIMutI CAGTG 1 cut(s) 774
BveI ACCTGC 1 cut(s) 643
Cac8I GCNNGC 2 cut(s) 346, 377
CfoI GCGC 5 cut(s) 47, 92, 157, 200, 409
Cfr13I GGNCC 3 cut(s) 262, 328, 494
Cfr42I CCGCGG 1 cut(s) 513
Csp6I GTAC 1 cut(s) 418
CviAII CATG 4 cut(s) 457, 685, 782, 808
CviQI GTAC 1 cut(s) 418
DdeI CTNAG 2 cut(s) 498, 744
DpnI GATC 2 cut(s) 363, 491
DpnII GATC 2 cut(s) 361, 489
Eam1104I CTCTTC 1 cut(s) 470
EarI CTCTTC 1 cut(s) 470
EciI GGCGGA 2 cut(s) 42, 261
Ecl136II GAGCTC 1 cut(s) 146
Eco147I AGGCCT 1 cut(s) 131
Eco24I GRGCYC 2 cut(s) 148, 381
Eco47I GGWCC 1 cut(s) 328
Eco47III AGCGCT 1 cut(s) 199
Eco53kI GAGCTC 1 cut(s) 146
Eco57I CTGAAG 2 cut(s) 415, 512
Eco81I CCTNAGG 1 cut(s) 498
EcoICRI GAGCTC 1 cut(s) 146
EcoRI GAATTC 1 cut(s) 503
EcoRII CCWGG 2 cut(s) 126, 297
EcoT22I ATGCAT 1 cut(s) 607
EcoT38I GRGCYC 2 cut(s) 148, 381
FaeI CATG 4 cut(s) 460, 688, 785, 811
FaiI YATR 7 cut(s) 458, 686, 702, 772, 783, 809, 838
FatI CATG 4 cut(s) 456, 684, 781, 807
FauI CCCGC 3 cut(s) 109, 324, 368
FbaI TGATCA 1 cut(s) 361
FriOI GRGCYC 2 cut(s) 148, 381
GlaI GCGC 5 cut(s) 46, 91, 156, 199, 408
GsuI CTGGAG 2 cut(s) 556, 696
HaeII RGCGCY 3 cut(s) 48, 201, 410
HaeIII GGCC 6 cut(s) 131, 263, 344, 496, 681, 692
HapII CCGG 6 cut(s) 6, 57, 260, 266, 272, 321
HhaI GCGC 5 cut(s) 47, 92, 157, 200, 409
Hin1II CATG 4 cut(s) 460, 688, 785, 811
Hin6I GCGC 5 cut(s) 45, 90, 155, 198, 407
HinP1I GCGC 5 cut(s) 45, 90, 155, 198, 407
HinfI GANTC 2 cut(s) 584, 613
HpaII CCGG 6 cut(s) 6, 57, 260, 266, 272, 321
HphI GGTGA 3 cut(s) 460, 499, 624
Hpy188I TCNGA 2 cut(s) 426, 531
Hpy188III TCNNGA 3 cut(s) 6, 352, 365
Hpy99I CGWCG 4 cut(s) 310, 313, 389, 418
HpyAV CCTTC 4 cut(s) 298, 397, 682, 754
HpyCH4III ACNGT 4 cut(s) 209, 445, 524, 730
HpyCH4IV ACGT 1 cut(s) 336
HpyCH4V TGCA 3 cut(s) 400, 605, 785
HpyF10VI GCNNNNNNNGC 7 cut(s) 42, 152, 192, 195, 218, 282, 406
HpyF3I CTNAG 2 cut(s) 498, 744
HpySE526I ACGT 1 cut(s) 336
Hsp92II CATG 4 cut(s) 460, 688, 785, 811
HspAI GCGC 5 cut(s) 45, 90, 155, 198, 407
Kpn2I TCCGGA 1 cut(s) 5
Ksp22I TGATCA 1 cut(s) 361
KspI CCGCGG 1 cut(s) 513
Kzo9I GATC 2 cut(s) 361, 489
LmnI GCTCC 6 cut(s) 143, 151, 175, 217, 229, 274
Lsp1109I GCAGC 4 cut(s) 54, 198, 207, 384
LweI GCATC 1 cut(s) 592
MaeII ACGT 1 cut(s) 336
MaeIII GTNAC 1 cut(s) 794
MalI GATC 2 cut(s) 363, 491
MbiI CCGCTC 1 cut(s) 170
MboI GATC 2 cut(s) 361, 489
MboII GAAGA 3 cut(s) 443, 457, 518
MhlI GDGCHC 4 cut(s) 148, 214, 298, 381
MluCI AATT 3 cut(s) 503, 579, 706
MlyI GAGTC 2 cut(s) 578, 622
Mph1103I ATGCAT 1 cut(s) 607
MroI TCCGGA 1 cut(s) 5
MseI TTAA 3 cut(s) 732, 740, 753
MslI CAYNNNNRTG 1 cut(s) 512
MspA1I CMGCKG 3 cut(s) 189, 375, 512
MspI CCGG 6 cut(s) 6, 57, 260, 266, 272, 321
MspR9I CCNGG 7 cut(s) 57, 128, 260, 266, 273, 299, 321
MvaI CCWGG 2 cut(s) 128, 299
MvnI CGCG 3 cut(s) 155, 221, 512
MwoI GCNNNNNNNGC 7 cut(s) 42, 152, 192, 195, 218, 282, 406
NciI CCSGG 5 cut(s) 57, 260, 266, 273, 321
NdeII GATC 2 cut(s) 361, 489
NlaIII CATG 4 cut(s) 460, 688, 785, 811
NlaIV GGNNCC 6 cut(s) 225, 264, 270, 295, 303, 330
NsiI ATGCAT 1 cut(s) 607
OliI CACNNNNGTG 1 cut(s) 512
PaqCI CACCTGC 1 cut(s) 643
PceI AGGCCT 1 cut(s) 131
PleI GAGTC 2 cut(s) 578, 621
PpsI GAGTC 2 cut(s) 578, 621
Psp124BI GAGCTC 1 cut(s) 148
Psp6I CCWGG 2 cut(s) 126, 297
PspGI CCWGG 2 cut(s) 126, 297
PspN4I GGNNCC 6 cut(s) 225, 264, 270, 295, 303, 330
PspPI GGNCC 3 cut(s) 262, 328, 494
RsaI GTAC 1 cut(s) 419
RsaNI GTAC 1 cut(s) 418
RseI CAYNNNNRTG 1 cut(s) 512
SacI GAGCTC 1 cut(s) 148
SacII CCGCGG 1 cut(s) 513
SaqAI TTAA 3 cut(s) 732, 740, 753
Sau3AI GATC 2 cut(s) 361, 489
Sau96I GGNCC 3 cut(s) 262, 328, 494
SchI GAGTC 2 cut(s) 578, 622
ScrFI CCNGG 7 cut(s) 57, 128, 260, 266, 273, 299, 321
SduI GDGCHC 4 cut(s) 148, 214, 298, 381
SetI ASST 6 cut(s) 97, 148, 339, 431, 437, 637
SfaNI GCATC 1 cut(s) 592
Sfr303I CCGCGG 1 cut(s) 513
SgrBI CCGCGG 1 cut(s) 513
SinI GGWCC 1 cut(s) 328
SmiMI CAYNNNNRTG 1 cut(s) 512
SmlI CTYRAG 1 cut(s) 436
SmoI CTYRAG 1 cut(s) 436
Sse9I AATT 3 cut(s) 503, 579, 706
SseBI AGGCCT 1 cut(s) 131
SspI AATATT 1 cut(s) 546
SstI GAGCTC 1 cut(s) 148
StuI AGGCCT 1 cut(s) 131
StyD4I CCNGG 7 cut(s) 55, 126, 258, 264, 271, 297, 319
TaaI ACNGT 4 cut(s) 209, 445, 524, 730
TaiI ACGT 1 cut(s) 339
TaqI TCGA 3 cut(s) 384, 558, 714
TasI AATT 3 cut(s) 503, 579, 706
TauI GCSGC 7 cut(s) 74, 170, 192, 195, 224, 243, 246
Tru1I TTAA 3 cut(s) 732, 740, 753
Tru9I TTAA 3 cut(s) 732, 740, 753
TscAI CASTG 1 cut(s) 781
TseI GCWGC 4 cut(s) 42, 186, 195, 372
TspDTI ATGAA 4 cut(s) 437, 700, 701, 796
TspGWI ACGGA 4 cut(s) 156, 195, 294, 341
TspRI CASTG 1 cut(s) 781
VpaK11BI GGWCC 1 cut(s) 328
XapI RAATTY 1 cut(s) 503
Zsp2I ATGCAT 1 cut(s) 607
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.