Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0006634

Physical Location & Seq

Genomic Coordinates Reverse (-)

18611427 .. 18614516

Gene Structure 3090 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g24530.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGTCAGGATACCCACACCCACCGCCTAACTACGGCTACGGCAGCGCCCCTCCCCCCGGCAAACCCTACTCCTCCGCCCCTCCTCCCTACGGCGCCCCTCCTCCCGGCTCAGCTCCTCCAAACCAACACCAGCCCTCCCCCTACGGAGCTCCTTCCGCCCCCTACGCCTCTCCTCCTCCTCCCCAAGGCAGCGGCGGATACGGCGCTCCCTACGCGGCCCCACCCCAAGGCGGCGCCGGATTTCCAGCCCCTGGCCCACCACACGGCGGCGGAGGAGGAGGCGGATACCCGTCCCCGGCTCCTGGTTACGGAAGCCCGTTCGCGGCTCTGGTGCCGTCGTCGTTCCCGCCAGGAACCGACCCGAACGTGGTGGCTTGCTTCCAGATTGCCGATCAGGACGGGAGCGGGTTCATCGACGACAAGGAGTTGCAGAAGGCGCTGTCGTCGTACAACCAGAGCTTCAGCATGAGGACTGTTCATCTTCTCATGTATCTCTTCACCCAGTCCAACTCCAGAAAGATCGGGCCTAAGGAATTCACCGCTGTGTTTTACAGTCTTCAGAACTGGAGGGGAATATTTGAGAAGTTTGACAGAGACAGGAGTGGGAAGATTGACTCGAATGAGTTGAGAGATGCATTGGGGAGTCTGGGATTTTCTGTCTCGCCTGCGGTTTTGGATTTGCTGGTGTCCAAGTTTGATAAGACTGGAGGTCACATGAAGGCCATTGAATATGATAATTTCATCGAGTGTTGTCTTACTGTTAAGGGATTAACTGAGAAGTTTAAGGAGAAGGACAAAGCATACACTGGTCATGCAACTTTCAGTTATGAGGAGTTCATGTTGATTGTTTTGCCTTTCCTCATCGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6

Protein Analysis

290

Amino Acids

30.56

Weight (kDa)

6.29

Isoelectric Point (pI)

63.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	126 - 183	5.3e-07	EF-hand domain pair
EF-hand_7	PF13499	189 - 249	1.7e-08	EF-hand domain pair
EF-hand_6	PF13405	189 - 217	2.3e-07	EF-hand domain
EF-hand_1	PF00036	190 - 215	2.2e-06	EF hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006634)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10300 AT3G10300 AT3G10300 AT3G10300 AT3G10300 AT3G10300 AT5G04170
fragaria_vesca	FvH4_6g24530
malus_domestica	MD12G1082900.v1.1 MD14G1061500.v1.1 MD14G1077400.v1.1 MD14G1077700.v1.1
prunus_persica	Prupe.7G053100_v2.0.a1
pyrus_communis	pycom12g06980 pycom14g06630 pycom14g06640
rosa_chinensis	RchiOBHm_Chr3g0483641
rosa_laevigata	RLG00000023262
rosa_multiflora	Rmu_sc0000555.1_g000008
rosa_roxburghii	Rroxscaffold_6G00398160
rosa_rugosa	Rorug03G0207700
rosa_samantha	Rh3AG256100 Rh3BG292800 Rh3CG290500 Rh3DG286400
rosa_wichuraiana	Rw3G023130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	92, 233, 331
AccB7I	CCANNNNNTGG	1 cut(s)	251
AccBSI	CCGCTC	1 cut(s)	405
AccII	CGCG	2 cut(s)	215, 323
AcsI	RAATTY	1 cut(s)	533
AcuI	CTGAAG	2 cut(s)	445, 542
AcyI	GRCGYC	2 cut(s)	93, 234
AfaI	GTAC	1 cut(s)	449
AgsI	TTSAA	1 cut(s)	728
AhdI	GACNNNNNGTC	1 cut(s)	708
AjnI	CCWGG	3 cut(s)	250, 301, 349
AleI	CACNNNNGTG	1 cut(s)	542
AluBI	AGCT	3 cut(s)	113, 149, 459
AluI	AGCT	3 cut(s)	113, 149, 459
Alw21I	GWGCWC	1 cut(s)	151
Alw26I	GTCTC	2 cut(s)	588, 664
AlwNI	CAGNNNCTG	1 cut(s)	251
AoxI	GGCC	4 cut(s)	216, 253, 524, 720
ApeKI	GCWGC	2 cut(s)	42, 189
ApoI	RAATTY	1 cut(s)	533
AspLEI	GCGC	5 cut(s)	47, 95, 206, 236, 439
AspS9I	GGNCC	3 cut(s)	217, 254, 524
AsuC2I	CCSGG	3 cut(s)	57, 105, 296
AsuHPI	GGTGA	2 cut(s)	490, 529
AxyI	CCTNAGG	1 cut(s)	528
BanI	GGYRCC	3 cut(s)	92, 233, 331
BanII	GRGCYC	1 cut(s)	151
BbsI	GAAGAC	1 cut(s)	548
Bbv12I	GWGCWC	1 cut(s)	151
BbvI	GCAGC	2 cut(s)	54, 201
BceAI	ACGGC	6 cut(s)	49, 55, 106, 217, 280, 319
BciT130I	CCWGG	3 cut(s)	252, 303, 351
BciVI	GTATCC	2 cut(s)	191, 278
BcnI	CCSGG	3 cut(s)	57, 105, 296
BcoDI	GTCTC	2 cut(s)	588, 664
BfoI	RGCGCY	5 cut(s)	48, 96, 207, 237, 440
BfuI	GTATCC	2 cut(s)	191, 278
BisI	GCNGC	7 cut(s)	43, 190, 193, 216, 232, 268, 324
BlpI	GCTNAGC	1 cut(s)	109
BlsI	GCNGC	7 cut(s)	44, 191, 194, 217, 233, 269, 325
Bme1390I	CCNGG	6 cut(s)	57, 105, 252, 296, 303, 351
BmeRI	GACNNNNNGTC	1 cut(s)	708
BmgT120I	GGNCC	3 cut(s)	217, 254, 524
BmiI	GGNNCC	6 cut(s)	94, 219, 235, 300, 333, 355
BmrFI	CCNGG	6 cut(s)	57, 105, 252, 296, 303, 351
BmrI	ACTGGG	1 cut(s)	496
BmsI	GCATC	1 cut(s)	622
BmuI	ACTGGG	1 cut(s)	496
BpiI	GAAGAC	1 cut(s)	548
BpmI	CTGGAG	3 cut(s)	496, 586, 726
Bpu1102I	GCTNAGC	1 cut(s)	109
BpuMI	CCSGG	3 cut(s)	57, 105, 296
BsaHI	GRCGYC	2 cut(s)	93, 234
BsaJI	CCNNGG	5 cut(s)	55, 184, 226, 250, 294
BsaXI	ACNNNNNCTCC	4 cut(s)	119, 149, 824, 854
Bse1I	ACTGG	4 cut(s)	502, 569, 709, 811
Bse21I	CCTNAGG	1 cut(s)	528
BseBI	CCWGG	3 cut(s)	252, 303, 351
BseDI	CCNNGG	5 cut(s)	55, 184, 226, 250, 294
BseMII	CTCAG	2 cut(s)	123, 765
BseNI	ACTGG	4 cut(s)	502, 569, 709, 811
BseXI	GCAGC	2 cut(s)	54, 201
Bsh1236I	CGCG	2 cut(s)	215, 323
BshFI	GGCC	4 cut(s)	218, 255, 526, 722
BshNI	GGYRCC	3 cut(s)	92, 233, 331
BsiHKAI	GWGCWC	1 cut(s)	151
BsiSI	CCGG	4 cut(s)	57, 105, 237, 296
BslFI	GGGAC	1 cut(s)	277
BsmAI	GTCTC	2 cut(s)	588, 664
BsmFI	GGGAC	1 cut(s)	277
BsnI	GGCC	4 cut(s)	218, 255, 526, 722
Bsp1286I	GDGCHC	1 cut(s)	151
Bsp143I	GATC	2 cut(s)	391, 519
Bsp1720I	GCTNAGC	1 cut(s)	109
BspANI	GGCC	4 cut(s)	218, 255, 526, 722
BspCNI	CTCAG	2 cut(s)	122, 766
BspFNI	CGCG	2 cut(s)	215, 323
BspLI	GGNNCC	6 cut(s)	94, 219, 235, 300, 333, 355
BspT107I	GGYRCC	3 cut(s)	92, 233, 331
BsrBI	CCGCTC	1 cut(s)	405
BsrI	ACTGG	4 cut(s)	502, 569, 709, 811
BssECI	CCNNGG	5 cut(s)	55, 184, 226, 250, 294
BssMI	GATC	2 cut(s)	391, 519
BssNI	GRCGYC	2 cut(s)	93, 234
BssT1I	CCWWGG	2 cut(s)	184, 226
Bst2UI	CCWGG	3 cut(s)	252, 303, 351
Bst4CI	ACNGT	3 cut(s)	475, 554, 760
Bst6I	CTCTTC	1 cut(s)	500
BstACI	GRCGYC	2 cut(s)	93, 234
BstC8I	GCNNGC	2 cut(s)	376, 666
BstDEI	CTNAG	3 cut(s)	109, 528, 774
BstENI	CCTNNNNNAGG	1 cut(s)	183
BstFNI	CGCG	2 cut(s)	215, 323
BstH2I	RGCGCY	5 cut(s)	48, 96, 207, 237, 440
BstHHI	GCGC	5 cut(s)	47, 95, 206, 236, 439
BstKTI	GATC	2 cut(s)	394, 522
BstMAI	GTCTC	2 cut(s)	588, 664
BstMBI	GATC	2 cut(s)	391, 519
BstMWI	GCNNNNNNNGC	6 cut(s)	42, 155, 164, 201, 212, 436
BstNI	CCWGG	3 cut(s)	252, 303, 351
BstSCI	CCNGG	6 cut(s)	55, 103, 250, 294, 301, 349
BstUI	CGCG	2 cut(s)	215, 323
BstV1I	GCAGC	2 cut(s)	54, 201
BstV2I	GAAGAC	1 cut(s)	548
Bsu36I	CCTNAGG	1 cut(s)	528
BsuI	GTATCC	2 cut(s)	191, 278
BsuRI	GGCC	4 cut(s)	218, 255, 526, 722
BtgZI	GCGATG	1 cut(s)	847
BtsIMutI	CAGTG	1 cut(s)	804
Cac8I	GCNNGC	2 cut(s)	376, 666
CaiI	CAGNNNCTG	1 cut(s)	251
CfoI	GCGC	5 cut(s)	47, 95, 206, 236, 439
Cfr13I	GGNCC	3 cut(s)	217, 254, 524
Csp6I	GTAC	1 cut(s)	448
CviAII	CATG	5 cut(s)	466, 487, 715, 812, 838
CviQI	GTAC	1 cut(s)	448
DdeI	CTNAG	3 cut(s)	109, 528, 774
DinI	GGCGCC	2 cut(s)	94, 235
DpnI	GATC	2 cut(s)	393, 521
DpnII	GATC	2 cut(s)	391, 519
DriI	GACNNNNNGTC	1 cut(s)	708
Eam1104I	CTCTTC	1 cut(s)	500
Eam1105I	GACNNNNNGTC	1 cut(s)	708
EarI	CTCTTC	1 cut(s)	500
EciI	GGCGGA	5 cut(s)	64, 145, 210, 285, 297
Ecl136II	GAGCTC	1 cut(s)	149
Eco130I	CCWWGG	2 cut(s)	184, 226
Eco24I	GRGCYC	1 cut(s)	151
Eco53kI	GAGCTC	1 cut(s)	149
Eco57I	CTGAAG	2 cut(s)	445, 542
Eco81I	CCTNAGG	1 cut(s)	528
EcoICRI	GAGCTC	1 cut(s)	149
EcoNI	CCTNNNNNAGG	1 cut(s)	183
EcoRI	GAATTC	1 cut(s)	533
EcoRII	CCWGG	3 cut(s)	250, 301, 349
EcoT14I	CCWWGG	2 cut(s)	184, 226
EcoT22I	ATGCAT	1 cut(s)	637
EcoT38I	GRGCYC	1 cut(s)	151
EgeI	GGCGCC	2 cut(s)	94, 235
EheI	GGCGCC	2 cut(s)	94, 235
ErhI	CCWWGG	2 cut(s)	184, 226
FaeI	CATG	5 cut(s)	469, 490, 718, 815, 841
FaiI	YATR	9 cut(s)	467, 488, 716, 732, 802, 813, 828, 839, 868
FaqI	GGGAC	1 cut(s)	277
FatI	CATG	5 cut(s)	465, 486, 714, 811, 837
FauI	CCCGC	2 cut(s)	354, 398
Fnu4HI	GCNGC	7 cut(s)	43, 190, 193, 216, 232, 268, 324
FriOI	GRGCYC	1 cut(s)	151
Fsp4HI	GCNGC	7 cut(s)	43, 190, 193, 216, 232, 268, 324
GlaI	GCGC	5 cut(s)	46, 94, 205, 235, 438
GluI	GCNGC	7 cut(s)	43, 190, 193, 216, 232, 268, 324
GsuI	CTGGAG	3 cut(s)	496, 586, 726
HaeII	RGCGCY	5 cut(s)	48, 96, 207, 237, 440
HaeIII	GGCC	4 cut(s)	218, 255, 526, 722
HapII	CCGG	4 cut(s)	57, 105, 237, 296
HhaI	GCGC	5 cut(s)	47, 95, 206, 236, 439
Hin1I	GRCGYC	2 cut(s)	93, 234
Hin1II	CATG	5 cut(s)	469, 490, 718, 815, 841
Hin6I	GCGC	5 cut(s)	45, 93, 204, 234, 437
HinP1I	GCGC	5 cut(s)	45, 93, 204, 234, 437
HinfI	GANTC	2 cut(s)	614, 643
HpaII	CCGG	4 cut(s)	57, 105, 237, 296
HphI	GGTGA	2 cut(s)	490, 529
Hpy188I	TCNGA	1 cut(s)	561
Hpy188III	TCNNGA	4 cut(s)	6, 382, 395, 513
Hpy99I	CGWCG	4 cut(s)	340, 343, 419, 448
HpyAV	CCTTC	4 cut(s)	162, 427, 712, 784
HpyCH4III	ACNGT	3 cut(s)	475, 554, 760
HpyCH4IV	ACGT	1 cut(s)	366
HpyCH4V	TGCA	3 cut(s)	430, 635, 815
HpyF10VI	GCNNNNNNNGC	6 cut(s)	42, 155, 164, 201, 212, 436
HpyF3I	CTNAG	3 cut(s)	109, 528, 774
HpySE526I	ACGT	1 cut(s)	366
Hsp92I	GRCGYC	2 cut(s)	93, 234
Hsp92II	CATG	5 cut(s)	469, 490, 718, 815, 841
HspAI	GCGC	5 cut(s)	45, 93, 204, 234, 437
KasI	GGCGCC	2 cut(s)	92, 233
Kzo9I	GATC	2 cut(s)	391, 519
LmnI	GCTCC	6 cut(s)	118, 146, 154, 211, 304, 402
Lsp1109I	GCAGC	2 cut(s)	54, 201
LweI	GCATC	1 cut(s)	622
MaeII	ACGT	1 cut(s)	366
MaeIII	GTNAC	2 cut(s)	305, 710
MalI	GATC	2 cut(s)	393, 521
MbiI	CCGCTC	1 cut(s)	405
MboI	GATC	2 cut(s)	391, 519
MboII	GAAGA	4 cut(s)	473, 487, 548, 619
MhlI	GDGCHC	1 cut(s)	151
MluCI	AATT	2 cut(s)	533, 736
Mly113I	GGCGCC	2 cut(s)	93, 234
MlyI	GAGTC	2 cut(s)	608, 652
MmeI	TCCRAC	1 cut(s)	531
Mph1103I	ATGCAT	1 cut(s)	637
MseI	TTAA	3 cut(s)	762, 770, 783
MslI	CAYNNNNRTG	1 cut(s)	542
MspA1I	CMGCKG	2 cut(s)	192, 542
MspI	CCGG	4 cut(s)	57, 105, 237, 296
MspR9I	CCNGG	6 cut(s)	57, 105, 252, 296, 303, 351
MvaI	CCWGG	3 cut(s)	252, 303, 351
MvnI	CGCG	2 cut(s)	215, 323
MwoI	GCNNNNNNNGC	6 cut(s)	42, 155, 164, 201, 212, 436
NarI	GGCGCC	2 cut(s)	93, 234
NciI	CCSGG	3 cut(s)	57, 105, 296
NdeII	GATC	2 cut(s)	391, 519
NlaIII	CATG	5 cut(s)	469, 490, 718, 815, 841
NlaIV	GGNNCC	6 cut(s)	94, 219, 235, 300, 333, 355
NmuCI	GTSAC	1 cut(s)	710
NsiI	ATGCAT	1 cut(s)	637
OliI	CACNNNNGTG	1 cut(s)	542
PflMI	CCANNNNNTGG	1 cut(s)	251
PkrI	GCNGC	7 cut(s)	44, 191, 194, 217, 233, 269, 325
PleI	GAGTC	2 cut(s)	608, 651
PluTI	GGCGCC	2 cut(s)	96, 237
PpsI	GAGTC	2 cut(s)	608, 651
Psp124BI	GAGCTC	1 cut(s)	151
Psp6I	CCWGG	3 cut(s)	250, 301, 349
PspGI	CCWGG	3 cut(s)	250, 301, 349
PspN4I	GGNNCC	6 cut(s)	94, 219, 235, 300, 333, 355
PspPI	GGNCC	3 cut(s)	217, 254, 524
PstNI	CAGNNNCTG	1 cut(s)	251
RsaI	GTAC	1 cut(s)	449
RsaNI	GTAC	1 cut(s)	448
RseI	CAYNNNNRTG	1 cut(s)	542
SacI	GAGCTC	1 cut(s)	151
SaqAI	TTAA	3 cut(s)	762, 770, 783
SatI	GCNGC	7 cut(s)	43, 190, 193, 216, 232, 268, 324
Sau3AI	GATC	2 cut(s)	391, 519
Sau96I	GGNCC	3 cut(s)	217, 254, 524
SchI	GAGTC	2 cut(s)	608, 652
ScrFI	CCNGG	6 cut(s)	57, 105, 252, 296, 303, 351
SduI	GDGCHC	1 cut(s)	151
SetI	ASST	5 cut(s)	115, 151, 369, 461, 712
SfaNI	GCATC	1 cut(s)	622
SfoI	GGCGCC	2 cut(s)	94, 235
SmiMI	CAYNNNNRTG	1 cut(s)	542
Sse9I	AATT	2 cut(s)	533, 736
SspDI	GGCGCC	2 cut(s)	92, 233
SspI	AATATT	1 cut(s)	576
SstI	GAGCTC	1 cut(s)	151
StyD4I	CCNGG	6 cut(s)	55, 103, 250, 294, 301, 349
StyI	CCWWGG	2 cut(s)	184, 226
TaaI	ACNGT	3 cut(s)	475, 554, 760
TaiI	ACGT	1 cut(s)	369
TaqI	TCGA	3 cut(s)	414, 617, 744
TasI	AATT	2 cut(s)	533, 736
TauI	GCSGC	5 cut(s)	195, 218, 234, 270, 326
Tru1I	TTAA	3 cut(s)	762, 770, 783
Tru9I	TTAA	3 cut(s)	762, 770, 783
TscAI	CASTG	1 cut(s)	811
TseFI	GTSAC	1 cut(s)	710
TseI	GCWGC	2 cut(s)	42, 189
Tsp45I	GTSAC	1 cut(s)	710
TspDTI	ATGAA	5 cut(s)	400, 467, 730, 731, 826
TspGWI	ACGGA	2 cut(s)	159, 324
TspRI	CASTG	1 cut(s)	811
Van91I	CCANNNNNTGG	1 cut(s)	251
XagI	CCTNNNNNAGG	1 cut(s)	183
XapI	RAATTY	1 cut(s)	533
Zsp2I	ATGCAT	1 cut(s)	637

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.