Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0006634

Physical Location & Seq

Genomic Coordinates Forward (+)

8847475 .. 8849663

Gene Structure 2189 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1077700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGTCAGGCTACTCACACTCTCCTCCCGGCTATGGCTATGGCTACGGCCACGGCTACGGCAGCGCTTCACCTCCAGGTCAACCCTACGGTGCACCGCCGCAAGGGCAGCACCAATACGACCATAAAGCCCGAGCCAACGGTGCTCCAGCTAAGCCTCACAAGAATCAAGCCCACGGAGGCGGATACCCCGCGCCTGCTCCAAGTTACGGCAGCCTGTTCGCGGCTTTGGTTCCGTCGGTGTTCCCGCCGGGCACGGATCCGCAAATCATATCTTGCTTTCAGCTGGCAGATCAGGACGGTAGCGGCTTCATCGACGACAAGGAGATGCAGAGAGCTCTGTCGTCGTACAATCAGAGCTTCAGCTTGAGGACTGTTCATCTTCTCATGTACCTTTTCACCCAGACCAACACCAGGAAGATCGGACCCAAGGAATTCGCTGCACTGTTCTACAGTCTTCAAAGTTGGAGGGGAGTGTTTGAGAGGTTCGACCGGGACAGAAGTGGGTTCATTGATGCAAATGAGTTGAGAGATGCACTGCTGAGTCTGGGATTTGCTGTCTCACCTGTAGTTTTAGAACTGCTGGTCTATAAATTCGGCAAGACTGGAGGCAAAAAGAGGGCCATTGAATATGACAATTTCATCGAGTGCTGTATGACTGTTAAGGGATTAACTGAGAGGTTTAAGGAGAAGGACAGAGCGTACACTGGTATGGGAACTTTCACTTATGAGGAGTTCATGTTGACTGTCCTGCCATTCCTGATTGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6

Protein Analysis

256

Amino Acids

28.16

Weight (kDa)

8.31

Isoelectric Point (pI)

46.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	88 - 150	3.8e-07	EF-hand domain pair
EF-hand_7	PF13499	155 - 215	4.7e-06	EF-hand domain pair
EF-hand_6	PF13405	155 - 183	2.8e-07	EF-hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006634)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10300 AT3G10300 AT3G10300 AT3G10300 AT3G10300 AT3G10300 AT5G04170
fragaria_vesca	FvH4_6g24530
malus_domestica	MD12G1082900.v1.1 MD14G1061500.v1.1 MD14G1077400.v1.1 MD14G1077700.v1.1
prunus_persica	Prupe.7G053100_v2.0.a1
pyrus_communis	pycom12g06980 pycom14g06630 pycom14g06640
rosa_chinensis	RchiOBHm_Chr3g0483641
rosa_laevigata	RLG00000023262
rosa_multiflora	Rmu_sc0000555.1_g000008
rosa_roxburghii	Rroxscaffold_6G00398160
rosa_rugosa	Rorug03G0207700
rosa_samantha	Rh3AG256100 Rh3BG292800 Rh3CG290500 Rh3DG286400
rosa_wichuraiana	Rw3G023130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	191, 221
AciI	CCGC	8 cut(s)	95, 98, 180, 189, 221, 245, 260, 303
AclWI	GGATC	2 cut(s)	251, 264
AcoI	YGGCCR	1 cut(s)	46
AcsI	RAATTY	2 cut(s)	431, 590
AcuI	CTGAAG	1 cut(s)	343
AfaI	GTAC	3 cut(s)	347, 389, 701
AfeI	AGCGCT	1 cut(s)	64
AfiI	CCNNNNNNNGG	5 cut(s)	32, 101, 206, 220, 411
AgsI	TTSAA	2 cut(s)	458, 626
AjnI	CCWGG	2 cut(s)	73, 410
AluBI	AGCT	5 cut(s)	149, 283, 335, 357, 363
AluI	AGCT	5 cut(s)	149, 283, 335, 357, 363
Alw21I	GWGCWC	3 cut(s)	94, 145, 337
Alw26I	GTCTC	1 cut(s)	562
Alw44I	GTGCAC	1 cut(s)	90
AlwI	GGATC	2 cut(s)	251, 264
Ama87I	CYCGRG	1 cut(s)	129
Aor51HI	AGCGCT	1 cut(s)	64
AoxI	GGCC	2 cut(s)	46, 618
ApaLI	GTGCAC	1 cut(s)	90
ApeKI	GCWGC	4 cut(s)	60, 106, 210, 437
ApoI	RAATTY	2 cut(s)	431, 590
AspLEI	GCGC	2 cut(s)	65, 193
AspS9I	GGNCC	2 cut(s)	422, 618
AsuC2I	CCSGG	3 cut(s)	27, 249, 491
AsuHPI	GGTGA	3 cut(s)	60, 388, 552
AvaI	CYCGRG	1 cut(s)	129
AvaII	GGWCC	1 cut(s)	422
BaeGI	GKGCMC	2 cut(s)	94, 254
BamHI	GGATCC	1 cut(s)	256
BanII	GRGCYC	1 cut(s)	337
BbsI	GAAGAC	1 cut(s)	446
Bbv12I	GWGCWC	3 cut(s)	94, 145, 337
BbvI	GCAGC	4 cut(s)	72, 118, 222, 424
BceAI	ACGGC	4 cut(s)	61, 67, 73, 223
BcgI	CGANNNNNNTGC	2 cut(s)	199, 233
BciT130I	CCWGG	2 cut(s)	75, 412
BciVI	GTATCC	1 cut(s)	176
BcnI	CCSGG	3 cut(s)	27, 249, 491
BcoDI	GTCTC	1 cut(s)	562
BfmI	CTRYAG	2 cut(s)	448, 564
BfoI	RGCGCY	1 cut(s)	66
BfuI	GTATCC	1 cut(s)	176
BglI	GCCNNNNNGGC	1 cut(s)	103
BisI	GCNGC	7 cut(s)	61, 98, 107, 211, 222, 304, 438
BlpI	GCTNAGC	1 cut(s)	150
BlsI	GCNGC	7 cut(s)	62, 99, 108, 212, 223, 305, 439
Bme1390I	CCNGG	5 cut(s)	27, 75, 249, 412, 491
Bme18I	GGWCC	1 cut(s)	422
BmeT110I	CYCGRG	1 cut(s)	129
BmgT120I	GGNCC	2 cut(s)	422, 618
BmiI	GGNNCC	3 cut(s)	231, 258, 424
BmrFI	CCNGG	5 cut(s)	27, 75, 249, 412, 491
BmsI	GCATC	3 cut(s)	315, 502, 520
BpiI	GAAGAC	1 cut(s)	446
BpmI	CTGGAG	3 cut(s)	57, 129, 624
Bpu1102I	GCTNAGC	1 cut(s)	150
BpuEI	CTTGAG	1 cut(s)	385
BpuMI	CCSGG	3 cut(s)	27, 249, 491
BsaJI	CCNNGG	3 cut(s)	49, 172, 426
BsaXI	ACNNNNNCTCC	2 cut(s)	722, 752
Bsc4I	CCNNNNNNNGG	5 cut(s)	32, 101, 206, 220, 411
Bse1I	ACTGG	2 cut(s)	607, 709
BseBI	CCWGG	2 cut(s)	75, 412
BseDI	CCNNGG	3 cut(s)	49, 172, 426
BseLI	CCNNNNNNNGG	5 cut(s)	32, 101, 206, 220, 411
BseMII	CTCAG	2 cut(s)	530, 663
BseNI	ACTGG	2 cut(s)	607, 709
BseRI	GAGGAG	2 cut(s)	12, 743
BseSI	GKGCMC	2 cut(s)	94, 254
BseXI	GCAGC	4 cut(s)	72, 118, 222, 424
BsgI	GTGCAG	1 cut(s)	423
Bsh1236I	CGCG	2 cut(s)	191, 221
Bsh1285I	CGRYCG	1 cut(s)	490
BshFI	GGCC	2 cut(s)	48, 620
BsiEI	CGRYCG	1 cut(s)	490
BsiHKAI	GWGCWC	3 cut(s)	94, 145, 337
BsiHKCI	CYCGRG	1 cut(s)	129
BsiSI	CCGG	3 cut(s)	27, 248, 490
BslFI	GGGAC	1 cut(s)	506
BslI	CCNNNNNNNGG	5 cut(s)	32, 101, 206, 220, 411
BsmAI	GTCTC	1 cut(s)	562
BsmFI	GGGAC	1 cut(s)	506
BsnI	GGCC	2 cut(s)	48, 620
BsoBI	CYCGRG	1 cut(s)	129
Bsp1286I	GDGCHC	4 cut(s)	94, 145, 254, 337
Bsp143I	GATC	3 cut(s)	256, 289, 417
Bsp1720I	GCTNAGC	1 cut(s)	150
BspACI	CCGC	8 cut(s)	95, 98, 180, 189, 221, 245, 260, 303
BspANI	GGCC	2 cut(s)	48, 620
BspCNI	CTCAG	2 cut(s)	531, 664
BspFNI	CGCG	2 cut(s)	191, 221
BspLI	GGNNCC	3 cut(s)	231, 258, 424
BspPI	GGATC	2 cut(s)	251, 264
BsrI	ACTGG	2 cut(s)	607, 709
BssECI	CCNNGG	3 cut(s)	49, 172, 426
BssMI	GATC	3 cut(s)	256, 289, 417
BssT1I	CCWWGG	1 cut(s)	426
Bst2UI	CCWGG	2 cut(s)	75, 412
Bst4CI	ACNGT	8 cut(s)	89, 140, 299, 373, 444, 452, 658, 745
BstC8I	GCNNGC	2 cut(s)	195, 285
BstDEI	CTNAG	3 cut(s)	150, 539, 672
BstDSI	CCRYGG	2 cut(s)	49, 172
BstFNI	CGCG	2 cut(s)	191, 221
BstH2I	RGCGCY	1 cut(s)	66
BstHHI	GCGC	2 cut(s)	65, 193
BstKTI	GATC	3 cut(s)	259, 292, 420
BstMAI	GTCTC	1 cut(s)	562
BstMBI	GATC	3 cut(s)	256, 289, 417
BstMCI	CGRYCG	1 cut(s)	490
BstMWI	GCNNNNNNNGC	4 cut(s)	60, 103, 106, 140
BstNI	CCWGG	2 cut(s)	75, 412
BstSCI	CCNGG	5 cut(s)	25, 73, 247, 410, 489
BstSFI	CTRYAG	2 cut(s)	448, 564
BstSLI	GKGCMC	2 cut(s)	94, 254
BstUI	CGCG	2 cut(s)	191, 221
BstV1I	GCAGC	4 cut(s)	72, 118, 222, 424
BstV2I	GAAGAC	1 cut(s)	446
BstX2I	RGATCY	1 cut(s)	256
BstYI	RGATCY	1 cut(s)	256
BsuI	GTATCC	1 cut(s)	176
BsuRI	GGCC	2 cut(s)	48, 620
BtgI	CCRYGG	2 cut(s)	49, 172
BtsI	GCAGTG	1 cut(s)	533
BtsIMutI	CAGTG	3 cut(s)	440, 533, 702
Cac8I	GCNNGC	2 cut(s)	195, 285
CfoI	GCGC	2 cut(s)	65, 193
Cfr13I	GGNCC	2 cut(s)	422, 618
Csp6I	GTAC	3 cut(s)	346, 388, 700
CviAII	CATG	2 cut(s)	385, 736
CviQI	GTAC	3 cut(s)	346, 388, 700
DdeI	CTNAG	3 cut(s)	150, 539, 672
DpnI	GATC	3 cut(s)	258, 291, 419
DpnII	GATC	3 cut(s)	256, 289, 417
EaeI	YGGCCR	1 cut(s)	46
EciI	GGCGGA	1 cut(s)	195
Ecl136II	GAGCTC	1 cut(s)	335
Eco130I	CCWWGG	1 cut(s)	426
Eco24I	GRGCYC	1 cut(s)	337
Eco47I	GGWCC	1 cut(s)	422
Eco47III	AGCGCT	1 cut(s)	64
Eco53kI	GAGCTC	1 cut(s)	335
Eco57I	CTGAAG	1 cut(s)	343
Eco88I	CYCGRG	1 cut(s)	129
EcoICRI	GAGCTC	1 cut(s)	335
EcoRI	GAATTC	1 cut(s)	431
EcoRII	CCWGG	2 cut(s)	73, 410
EcoT14I	CCWWGG	1 cut(s)	426
EcoT38I	GRGCYC	1 cut(s)	337
ErhI	CCWWGG	1 cut(s)	426
FaeI	CATG	2 cut(s)	388, 739
FaqI	GGGAC	1 cut(s)	506
FatI	CATG	2 cut(s)	384, 735
FauI	CCCGC	2 cut(s)	196, 252
Fnu4HI	GCNGC	7 cut(s)	61, 98, 107, 211, 222, 304, 438
FriOI	GRGCYC	1 cut(s)	337
Fsp4HI	GCNGC	7 cut(s)	61, 98, 107, 211, 222, 304, 438
GlaI	GCGC	2 cut(s)	64, 192
GluI	GCNGC	7 cut(s)	61, 98, 107, 211, 222, 304, 438
GsuI	CTGGAG	3 cut(s)	57, 129, 624
HaeII	RGCGCY	1 cut(s)	66
HaeIII	GGCC	2 cut(s)	48, 620
HapII	CCGG	3 cut(s)	27, 248, 490
HhaI	GCGC	2 cut(s)	65, 193
Hin1II	CATG	2 cut(s)	388, 739
Hin6I	GCGC	2 cut(s)	63, 191
HinP1I	GCGC	2 cut(s)	63, 191
HincII	GTYRAC	2 cut(s)	80, 741
HindII	GTYRAC	2 cut(s)	80, 741
HinfI	GANTC	2 cut(s)	163, 541
HpaII	CCGG	3 cut(s)	27, 248, 490
HphI	GGTGA	3 cut(s)	60, 388, 552
Hpy166II	GTNNAC	4 cut(s)	80, 92, 702, 741
Hpy188I	TCNGA	2 cut(s)	354, 422
Hpy188III	TCNNGA	2 cut(s)	293, 757
Hpy8I	GTNNAC	4 cut(s)	80, 92, 702, 741
Hpy99I	CGWCG	3 cut(s)	238, 317, 346
HpyAV	CCTTC	1 cut(s)	682
HpyCH4III	ACNGT	8 cut(s)	89, 140, 299, 373, 444, 452, 658, 745
HpyCH4V	TGCA	5 cut(s)	92, 328, 440, 515, 533
HpyF10VI	GCNNNNNNNGC	4 cut(s)	60, 103, 106, 140
HpyF3I	CTNAG	3 cut(s)	150, 539, 672
Hsp92II	CATG	2 cut(s)	388, 739
HspAI	GCGC	2 cut(s)	63, 191
Kzo9I	GATC	3 cut(s)	256, 289, 417
LmnI	GCTCC	2 cut(s)	148, 202
Lsp1109I	GCAGC	4 cut(s)	72, 118, 222, 424
LweI	GCATC	3 cut(s)	315, 502, 520
MaeIII	GTNAC	1 cut(s)	203
MalI	GATC	3 cut(s)	258, 291, 419
MboI	GATC	3 cut(s)	256, 289, 417
MboII	GAAGA	3 cut(s)	371, 427, 446
MflI	RGATCY	1 cut(s)	256
MhlI	GDGCHC	4 cut(s)	94, 145, 254, 337
MluCI	AATT	3 cut(s)	431, 590, 634
MlyI	GAGTC	1 cut(s)	550
MmeI	TCCRAC	1 cut(s)	443
MseI	TTAA	3 cut(s)	660, 668, 681
MslI	CAYNNNNRTG	1 cut(s)	707
MspA1I	CMGCKG	1 cut(s)	283
MspI	CCGG	3 cut(s)	27, 248, 490
MspR9I	CCNGG	5 cut(s)	27, 75, 249, 412, 491
MvaI	CCWGG	2 cut(s)	75, 412
MvnI	CGCG	2 cut(s)	191, 221
MwoI	GCNNNNNNNGC	4 cut(s)	60, 103, 106, 140
NciI	CCSGG	3 cut(s)	27, 249, 491
NdeII	GATC	3 cut(s)	256, 289, 417
NlaIII	CATG	2 cut(s)	388, 739
NlaIV	GGNNCC	3 cut(s)	231, 258, 424
PfeI	GAWTC	1 cut(s)	163
PkrI	GCNGC	7 cut(s)	62, 99, 108, 212, 223, 305, 439
PleI	GAGTC	1 cut(s)	549
PpsI	GAGTC	1 cut(s)	549
Psp124BI	GAGCTC	1 cut(s)	337
Psp6I	CCWGG	2 cut(s)	73, 410
PspGI	CCWGG	2 cut(s)	73, 410
PspN4I	GGNNCC	3 cut(s)	231, 258, 424
PspPI	GGNCC	2 cut(s)	422, 618
PsuI	RGATCY	1 cut(s)	256
PvuII	CAGCTG	1 cut(s)	283
RsaI	GTAC	3 cut(s)	347, 389, 701
RsaNI	GTAC	3 cut(s)	346, 388, 700
RseI	CAYNNNNRTG	1 cut(s)	707
SacI	GAGCTC	1 cut(s)	337
SaqAI	TTAA	3 cut(s)	660, 668, 681
SatI	GCNGC	7 cut(s)	61, 98, 107, 211, 222, 304, 438
Sau3AI	GATC	3 cut(s)	256, 289, 417
Sau96I	GGNCC	2 cut(s)	422, 618
SchI	GAGTC	1 cut(s)	550
ScrFI	CCNGG	5 cut(s)	27, 75, 249, 412, 491
SduI	GDGCHC	4 cut(s)	94, 145, 254, 337
SfaNI	GCATC	3 cut(s)	315, 502, 520
SfcI	CTRYAG	2 cut(s)	448, 564
SinI	GGWCC	1 cut(s)	422
SmiMI	CAYNNNNRTG	1 cut(s)	707
SmlI	CTYRAG	1 cut(s)	364
SmoI	CTYRAG	1 cut(s)	364
Sse9I	AATT	3 cut(s)	431, 590, 634
SsiI	CCGC	8 cut(s)	95, 98, 180, 189, 221, 245, 260, 303
SstI	GAGCTC	1 cut(s)	337
StyD4I	CCNGG	5 cut(s)	25, 73, 247, 410, 489
StyI	CCWWGG	1 cut(s)	426
TaaI	ACNGT	8 cut(s)	89, 140, 299, 373, 444, 452, 658, 745
TaqI	TCGA	3 cut(s)	312, 486, 642
TasI	AATT	3 cut(s)	431, 590, 634
TauI	GCSGC	3 cut(s)	100, 224, 306
TfiI	GAWTC	1 cut(s)	163
Tru1I	TTAA	3 cut(s)	660, 668, 681
Tru9I	TTAA	3 cut(s)	660, 668, 681
TscAI	CASTG	3 cut(s)	447, 540, 709
TseI	GCWGC	4 cut(s)	60, 106, 210, 437
TspDTI	ATGAA	5 cut(s)	298, 365, 496, 628, 724
TspGWI	ACGGA	3 cut(s)	189, 222, 269
TspRI	CASTG	3 cut(s)	447, 540, 709
VneI	GTGCAC	1 cut(s)	90
VpaK11BI	GGWCC	1 cut(s)	422
XapI	RAATTY	2 cut(s)	431, 590

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.