Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0006634

Physical Location & Seq

Genomic Coordinates Reverse (-)

29455599 .. 29458075

Gene Structure 2477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG290500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGTCCGGATACCCACAACCACCGCCAAACTACGGCTACGGCAGCGCCCCTCCGCCCGGCAAACCCTACGCCGCCTCCCCTCCCTACGGCGCACCTCCTCCTCCCGCCCAACACCAACACCAACAACACCAGGCCTCCCCCTACGGAGCTCCCTCCGCGCCTCCCTACGCCGCTCCTCCTCACGGAAGCAGCGGCGGCGGCCCCGGATACGGTGCTCCGTACGCGGCTCCTCCACAACACGGCGGCGGCGGATACCCGACCCCGGCGCCGGCTCCGGGCTACGGAAGCCCCTTCGGTGCCCTGGTGCCGTCGTCGTTCCCGCCCGGCACGGACCCGAACGTGGTGGCCTGCTTCCAGATTGCTGATCAGGACGGCAGCGGGCTCATCGACGACAAGGAGTTGCAGAAGGCGCTCTCGTCGTACAATCAGAGCTTCAGCTTGAGGACTGTTCATCTTCTCATGTATCTCTTCACCCAGACCAACACCAGAAAGATCGGGCCTAAGGAATTCACCGCGGTGTTTTACAGTCTTCAGAACTGGAGGGGAATATTTGAGAAGTTTGACAGAGACAGGAGTGGGAAAATTGACTCAAATGAGTTGAGAGATGCATTGGGGAGTCTGGGATTTTCTGTCTCACCTGCGGTTTTGGATTTGCTGGTGTCCAAGTTTGATAAGACTGGAGGCCATATGAAGGCCATTGAATATGATAATTTCATCGAGTACGTTCTCTCCTCTTTTCTTAACTTTGTTCATTTCGTTTTTTCTTTTGGTGGTCTATTTCCATCGTTTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6

Protein Analysis

264

Amino Acids

28.16

Weight (kDa)

6.43

Isoelectric Point (pI)

58.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	117 - 174	1e-05	EF-hand domain pair
EF-hand_7	PF13499	180 - 242	3.5e-09	EF-hand domain pair
EF-hand_6	PF13405	180 - 208	2e-07	EF-hand domain
EF-hand_1	PF00036	181 - 206	1.9e-06	EF hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006634)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10300 AT3G10300 AT3G10300 AT3G10300 AT3G10300 AT3G10300 AT5G04170
fragaria_vesca	FvH4_6g24530
malus_domestica	MD12G1082900.v1.1 MD14G1061500.v1.1 MD14G1077400.v1.1 MD14G1077700.v1.1
prunus_persica	Prupe.7G053100_v2.0.a1
pyrus_communis	pycom12g06980 pycom14g06630 pycom14g06640
rosa_chinensis	RchiOBHm_Chr3g0483641
rosa_laevigata	RLG00000023262
rosa_multiflora	Rmu_sc0000555.1_g000008
rosa_roxburghii	Rroxscaffold_6G00398160
rosa_rugosa	Rorug03G0207700
rosa_samantha	Rh3AG256100 Rh3BG292800 Rh3CG290500 Rh3DG286400
rosa_wichuraiana	Rw3G023130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	646
Acc36I	ACCTGC	1 cut(s)	646
AccB1I	GGYRCC	3 cut(s)	265, 296, 304
AccBSI	CCGCTC	1 cut(s)	173
AccII	CGCG	3 cut(s)	158, 224, 515
AccIII	TCCGGA	1 cut(s)	5
AcsI	RAATTY	1 cut(s)	506
AcuI	CTGAAG	2 cut(s)	418, 515
AcyI	GRCGYC	1 cut(s)	266
AfaI	GTAC	3 cut(s)	221, 422, 722
AgsI	TTSAA	1 cut(s)	701
AjnI	CCWGG	2 cut(s)	129, 300
AleI	CACNNNNGTG	1 cut(s)	515
AluBI	AGCT	3 cut(s)	149, 432, 438
AluI	AGCT	3 cut(s)	149, 432, 438
Alw21I	GWGCWC	2 cut(s)	151, 217
Alw26I	GTCTC	2 cut(s)	561, 637
Aor13HI	TCCGGA	1 cut(s)	5
AoxI	GGCC	6 cut(s)	132, 199, 345, 497, 682, 693
ApeKI	GCWGC	3 cut(s)	42, 189, 375
ApoI	RAATTY	1 cut(s)	506
AspLEI	GCGC	5 cut(s)	47, 92, 160, 268, 412
AspS9I	GGNCC	3 cut(s)	200, 331, 497
AsuC2I	CCSGG	5 cut(s)	57, 204, 263, 276, 324
AsuHPI	GGTGA	3 cut(s)	463, 502, 627
AvaII	GGWCC	1 cut(s)	331
AxyI	CCTNAGG	1 cut(s)	501
BaeGI	GKGCMC	1 cut(s)	301
BanI	GGYRCC	3 cut(s)	265, 296, 304
BanII	GRGCYC	2 cut(s)	151, 384
BbsI	GAAGAC	1 cut(s)	521
Bbv12I	GWGCWC	2 cut(s)	151, 217
BbvI	GCAGC	3 cut(s)	54, 201, 387
BccI	CCATC	1 cut(s)	790
BceAI	ACGGC	6 cut(s)	49, 55, 103, 256, 292, 388
BciT130I	CCWGG	2 cut(s)	131, 302
BciVI	GTATCC	2 cut(s)	200, 245
BclI	TGATCA	1 cut(s)	364
BcnI	CCSGG	5 cut(s)	57, 204, 263, 276, 324
BcoDI	GTCTC	2 cut(s)	561, 637
BfoI	RGCGCY	3 cut(s)	48, 269, 413
BfuAI	ACCTGC	1 cut(s)	646
BfuI	GTATCC	2 cut(s)	200, 245
Bme1390I	CCNGG	7 cut(s)	57, 131, 204, 263, 276, 302, 324
Bme18I	GGWCC	1 cut(s)	331
BmgT120I	GGNCC	3 cut(s)	200, 331, 497
BmiI	GGNNCC	7 cut(s)	202, 228, 267, 273, 298, 306, 333
BmrFI	CCNGG	7 cut(s)	57, 131, 204, 263, 276, 302, 324
BmsI	GCATC	1 cut(s)	595
BpiI	GAAGAC	1 cut(s)	521
BpmI	CTGGAG	2 cut(s)	559, 699
BpuEI	CTTGAG	1 cut(s)	460
BpuMI	CCSGG	5 cut(s)	57, 204, 263, 276, 324
BsaHI	GRCGYC	1 cut(s)	266
BsaJI	CCNNGG	4 cut(s)	202, 261, 300, 513
BsaWI	WCCGGW	1 cut(s)	5
BsaXI	ACNNNNNCTCC	6 cut(s)	59, 89, 119, 149, 713, 743
Bse118I	RCCGGY	1 cut(s)	268
Bse1I	ACTGG	2 cut(s)	542, 682
Bse21I	CCTNAGG	1 cut(s)	501
BseAI	TCCGGA	1 cut(s)	5
BseBI	CCWGG	2 cut(s)	131, 302
BseDI	CCNNGG	4 cut(s)	202, 261, 300, 513
BseNI	ACTGG	2 cut(s)	542, 682
BseRI	GAGGAG	6 cut(s)	87, 90, 165, 168, 219, 721
BseSI	GKGCMC	1 cut(s)	301
BseXI	GCAGC	3 cut(s)	54, 201, 387
Bsh1236I	CGCG	3 cut(s)	158, 224, 515
BshFI	GGCC	6 cut(s)	134, 201, 347, 499, 684, 695
BshNI	GGYRCC	3 cut(s)	265, 296, 304
BsiHKAI	GWGCWC	2 cut(s)	151, 217
BsiSI	CCGG	7 cut(s)	6, 57, 204, 263, 269, 275, 324
BsiWI	CGTACG	1 cut(s)	219
BsmAI	GTCTC	2 cut(s)	561, 637
BsnI	GGCC	6 cut(s)	134, 201, 347, 499, 684, 695
Bsp1286I	GDGCHC	4 cut(s)	151, 217, 301, 384
Bsp13I	TCCGGA	1 cut(s)	5
Bsp143I	GATC	2 cut(s)	364, 492
BspANI	GGCC	6 cut(s)	134, 201, 347, 499, 684, 695
BspEI	TCCGGA	1 cut(s)	5
BspFNI	CGCG	3 cut(s)	158, 224, 515
BspLI	GGNNCC	7 cut(s)	202, 228, 267, 273, 298, 306, 333
BspMI	ACCTGC	1 cut(s)	646
BspT107I	GGYRCC	3 cut(s)	265, 296, 304
BsrBI	CCGCTC	1 cut(s)	173
BsrFI	RCCGGY	1 cut(s)	268
BsrI	ACTGG	2 cut(s)	542, 682
BssAI	RCCGGY	1 cut(s)	268
BssECI	CCNNGG	4 cut(s)	202, 261, 300, 513
BssMI	GATC	2 cut(s)	364, 492
BssNI	GRCGYC	1 cut(s)	266
Bst2UI	CCWGG	2 cut(s)	131, 302
Bst4CI	ACNGT	3 cut(s)	212, 448, 527
Bst6I	CTCTTC	1 cut(s)	473
BstACI	GRCGYC	1 cut(s)	266
BstC8I	GCNNGC	3 cut(s)	270, 349, 380
BstDEI	CTNAG	1 cut(s)	501
BstDSI	CCRYGG	1 cut(s)	513
BstFNI	CGCG	3 cut(s)	158, 224, 515
BstH2I	RGCGCY	3 cut(s)	48, 269, 413
BstHHI	GCGC	5 cut(s)	47, 92, 160, 268, 412
BstKTI	GATC	2 cut(s)	367, 495
BstMAI	GTCTC	2 cut(s)	561, 637
BstMBI	GATC	2 cut(s)	364, 492
BstMWI	GCNNNNNNNGC	7 cut(s)	42, 155, 195, 198, 221, 285, 409
BstNI	CCWGG	2 cut(s)	131, 302
BstSCI	CCNGG	7 cut(s)	55, 129, 202, 261, 274, 300, 322
BstSLI	GKGCMC	1 cut(s)	301
BstUI	CGCG	3 cut(s)	158, 224, 515
BstV1I	GCAGC	3 cut(s)	54, 201, 387
BstV2I	GAAGAC	1 cut(s)	521
Bsu36I	CCTNAGG	1 cut(s)	501
BsuI	GTATCC	2 cut(s)	200, 245
BsuRI	GGCC	6 cut(s)	134, 201, 347, 499, 684, 695
BtgI	CCRYGG	1 cut(s)	513
BveI	ACCTGC	1 cut(s)	646
Cac8I	GCNNGC	3 cut(s)	270, 349, 380
CfoI	GCGC	5 cut(s)	47, 92, 160, 268, 412
Cfr10I	RCCGGY	1 cut(s)	268
Cfr13I	GGNCC	3 cut(s)	200, 331, 497
Cfr42I	CCGCGG	1 cut(s)	516
Csp6I	GTAC	3 cut(s)	220, 421, 721
CviAII	CATG	1 cut(s)	460
CviQI	GTAC	3 cut(s)	220, 421, 721
DdeI	CTNAG	1 cut(s)	501
DinI	GGCGCC	1 cut(s)	267
DpnI	GATC	2 cut(s)	366, 494
DpnII	GATC	2 cut(s)	364, 492
Eam1104I	CTCTTC	1 cut(s)	473
EarI	CTCTTC	1 cut(s)	473
EciI	GGCGGA	2 cut(s)	42, 264
Ecl136II	GAGCTC	1 cut(s)	149
Eco147I	AGGCCT	1 cut(s)	134
Eco24I	GRGCYC	2 cut(s)	151, 384
Eco47I	GGWCC	1 cut(s)	331
Eco53kI	GAGCTC	1 cut(s)	149
Eco57I	CTGAAG	2 cut(s)	418, 515
Eco81I	CCTNAGG	1 cut(s)	501
EcoICRI	GAGCTC	1 cut(s)	149
EcoRI	GAATTC	1 cut(s)	506
EcoRII	CCWGG	2 cut(s)	129, 300
EcoT22I	ATGCAT	1 cut(s)	610
EcoT38I	GRGCYC	2 cut(s)	151, 384
EgeI	GGCGCC	1 cut(s)	267
EheI	GGCGCC	1 cut(s)	267
FaeI	CATG	1 cut(s)	463
FaiI	YATR	4 cut(s)	461, 687, 689, 705
FatI	CATG	1 cut(s)	459
FauI	CCCGC	3 cut(s)	112, 327, 371
FauNDI	CATATG	1 cut(s)	687
FbaI	TGATCA	1 cut(s)	364
FriOI	GRGCYC	2 cut(s)	151, 384
GlaI	GCGC	5 cut(s)	46, 91, 159, 267, 411
GsuI	CTGGAG	2 cut(s)	559, 699
HaeII	RGCGCY	3 cut(s)	48, 269, 413
HaeIII	GGCC	6 cut(s)	134, 201, 347, 499, 684, 695
HapII	CCGG	7 cut(s)	6, 57, 204, 263, 269, 275, 324
HhaI	GCGC	5 cut(s)	47, 92, 160, 268, 412
Hin1I	GRCGYC	1 cut(s)	266
Hin1II	CATG	1 cut(s)	463
Hin6I	GCGC	5 cut(s)	45, 90, 158, 266, 410
HinP1I	GCGC	5 cut(s)	45, 90, 158, 266, 410
HinfI	GANTC	2 cut(s)	587, 616
HpaII	CCGG	7 cut(s)	6, 57, 204, 263, 269, 275, 324
HphI	GGTGA	3 cut(s)	463, 502, 627
Hpy188I	TCNGA	2 cut(s)	429, 534
Hpy188III	TCNNGA	3 cut(s)	6, 355, 368
Hpy99I	CGWCG	4 cut(s)	313, 316, 392, 421
HpyAV	CCTTC	3 cut(s)	301, 400, 685
HpyCH4III	ACNGT	3 cut(s)	212, 448, 527
HpyCH4IV	ACGT	2 cut(s)	339, 723
HpyCH4V	TGCA	2 cut(s)	403, 608
HpyF10VI	GCNNNNNNNGC	7 cut(s)	42, 155, 195, 198, 221, 285, 409
HpyF3I	CTNAG	1 cut(s)	501
HpySE526I	ACGT	2 cut(s)	339, 723
Hsp92I	GRCGYC	1 cut(s)	266
Hsp92II	CATG	1 cut(s)	463
HspAI	GCGC	5 cut(s)	45, 90, 158, 266, 410
KasI	GGCGCC	1 cut(s)	265
Kpn2I	TCCGGA	1 cut(s)	5
KroI	GCCGGC	1 cut(s)	268
KroNI	GCCGGC	1 cut(s)	270
Ksp22I	TGATCA	1 cut(s)	364
KspI	CCGCGG	1 cut(s)	516
Kzo9I	GATC	2 cut(s)	364, 492
LmnI	GCTCC	6 cut(s)	146, 154, 178, 220, 232, 277
Lsp1109I	GCAGC	3 cut(s)	54, 201, 387
LweI	GCATC	1 cut(s)	595
MaeII	ACGT	2 cut(s)	339, 723
MalI	GATC	2 cut(s)	366, 494
MbiI	CCGCTC	1 cut(s)	173
MboI	GATC	2 cut(s)	364, 492
MboII	GAAGA	3 cut(s)	446, 460, 521
MhlI	GDGCHC	4 cut(s)	151, 217, 301, 384
MluCI	AATT	3 cut(s)	506, 582, 709
Mly113I	GGCGCC	1 cut(s)	266
MlyI	GAGTC	2 cut(s)	581, 625
Mph1103I	ATGCAT	1 cut(s)	610
MroI	TCCGGA	1 cut(s)	5
MroNI	GCCGGC	1 cut(s)	268
MseI	TTAA	1 cut(s)	741
MslI	CAYNNNNRTG	1 cut(s)	515
MspA1I	CMGCKG	3 cut(s)	192, 378, 515
MspI	CCGG	7 cut(s)	6, 57, 204, 263, 269, 275, 324
MspR9I	CCNGG	7 cut(s)	57, 131, 204, 263, 276, 302, 324
MvaI	CCWGG	2 cut(s)	131, 302
MvnI	CGCG	3 cut(s)	158, 224, 515
MwoI	GCNNNNNNNGC	7 cut(s)	42, 155, 195, 198, 221, 285, 409
NaeI	GCCGGC	1 cut(s)	270
NarI	GGCGCC	1 cut(s)	266
NciI	CCSGG	5 cut(s)	57, 204, 263, 276, 324
NdeI	CATATG	1 cut(s)	687
NdeII	GATC	2 cut(s)	364, 492
NgoMIV	GCCGGC	1 cut(s)	268
NlaIII	CATG	1 cut(s)	463
NlaIV	GGNNCC	7 cut(s)	202, 228, 267, 273, 298, 306, 333
NsiI	ATGCAT	1 cut(s)	610
OliI	CACNNNNGTG	1 cut(s)	515
PaqCI	CACCTGC	1 cut(s)	646
PceI	AGGCCT	1 cut(s)	134
PdiI	GCCGGC	1 cut(s)	270
Pfl23II	CGTACG	1 cut(s)	219
PleI	GAGTC	2 cut(s)	581, 624
PluTI	GGCGCC	1 cut(s)	269
PpsI	GAGTC	2 cut(s)	581, 624
Psp124BI	GAGCTC	1 cut(s)	151
Psp6I	CCWGG	2 cut(s)	129, 300
PspGI	CCWGG	2 cut(s)	129, 300
PspLI	CGTACG	1 cut(s)	219
PspN4I	GGNNCC	7 cut(s)	202, 228, 267, 273, 298, 306, 333
PspPI	GGNCC	3 cut(s)	200, 331, 497
RsaI	GTAC	3 cut(s)	221, 422, 722
RsaNI	GTAC	3 cut(s)	220, 421, 721
RseI	CAYNNNNRTG	1 cut(s)	515
SacI	GAGCTC	1 cut(s)	151
SacII	CCGCGG	1 cut(s)	516
SaqAI	TTAA	1 cut(s)	741
Sau3AI	GATC	2 cut(s)	364, 492
Sau96I	GGNCC	3 cut(s)	200, 331, 497
SchI	GAGTC	2 cut(s)	581, 625
ScrFI	CCNGG	7 cut(s)	57, 131, 204, 263, 276, 302, 324
SduI	GDGCHC	4 cut(s)	151, 217, 301, 384
SetI	ASST	7 cut(s)	97, 151, 342, 434, 440, 640, 726
SfaNI	GCATC	1 cut(s)	595
SfoI	GGCGCC	1 cut(s)	267
Sfr303I	CCGCGG	1 cut(s)	516
SgrBI	CCGCGG	1 cut(s)	516
SinI	GGWCC	1 cut(s)	331
SmiMI	CAYNNNNRTG	1 cut(s)	515
SmlI	CTYRAG	1 cut(s)	439
SmoI	CTYRAG	1 cut(s)	439
Sse9I	AATT	3 cut(s)	506, 582, 709
SseBI	AGGCCT	1 cut(s)	134
SspDI	GGCGCC	1 cut(s)	265
SspI	AATATT	1 cut(s)	549
SstI	GAGCTC	1 cut(s)	151
StuI	AGGCCT	1 cut(s)	134
StyD4I	CCNGG	7 cut(s)	55, 129, 202, 261, 274, 300, 322
TaaI	ACNGT	3 cut(s)	212, 448, 527
TaiI	ACGT	2 cut(s)	342, 726
TaqI	TCGA	2 cut(s)	387, 717
TasI	AATT	3 cut(s)	506, 582, 709
TauI	GCSGC	8 cut(s)	74, 173, 195, 198, 201, 227, 246, 249
Tru1I	TTAA	1 cut(s)	741
Tru9I	TTAA	1 cut(s)	741
TseI	GCWGC	3 cut(s)	42, 189, 375
TspDTI	ATGAA	4 cut(s)	440, 703, 704, 740
TspGWI	ACGGA	5 cut(s)	159, 198, 207, 297, 344
VpaK11BI	GGWCC	1 cut(s)	331
XapI	RAATTY	1 cut(s)	506
Zsp2I	ATGCAT	1 cut(s)	610

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.