Small domain found in the jumonji family of transcription factors
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G04240 |
| fragaria_vesca | FvH4_7g19090 FvH4_7g19090 FvH4_7g19090 FvH4_7g19090 FvH4_7g19090 FvH4_7g19090 FvH4_7g19090 FvH4_7g19090 FvH4_7g19090 |
| malus_domestica | MD01G1106000.v1.1 MD07G1172400.v1.1 |
| prunus_persica | Prupe.2G211400_v2.0.a1 Prupe.2G211400_v2.0.a1 |
| pyrus_communis | pycom01g13280 pycom07g16690 |
| rosa_chinensis | RchiOBHm_Chr1g0362971 |
| rosa_laevigata | RLG00000027605 |
| rosa_multiflora | Rmu_sc0000174.1_g000009 |
| rosa_roxburghii | Rroxscaffold_4G00293590 |
| rosa_rugosa | Rorug01G0302900 Rorug01G0303000 Rorug01G0303100 Rorug01G0303200 |
| rosa_samantha | Rh1AG312100 Rh1BG275600 Rh1CG292500 Rh1DG306300 |
| rosa_wichuraiana | Rw1G027660 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 352 |
| AccB1I | GGYRCC | 3 cut(s) | 46, 457, 682 |
| AccI | GTMKAC | 4 cut(s) | 1710, 2187, 3041, 3149 |
| AccII | CGCG | 1 cut(s) | 1540 |
| AciI | CCGC | 7 cut(s) | 491, 1021, 1224, 1538, 2057, 3002, 3445 |
| AclWI | GGATC | 5 cut(s) | 77, 402, 570, 629, 930 |
| AcoI | YGGCCR | 1 cut(s) | 3237 |
| AcuI | CTGAAG | 5 cut(s) | 785, 1961, 2496, 3183, 3638 |
| AdeI | CACNNNGTG | 2 cut(s) | 2282, 2393 |
| AfaI | GTAC | 7 cut(s) | 763, 977, 1143, 1815, 2222, 2480, 2985 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 1134, 1245, 3518 |
| AflIII | ACRYGT | 4 cut(s) | 833, 2570, 3551, 3817 |
| AjiI | CACGTC | 1 cut(s) | 532 |
| AjnI | CCWGG | 7 cut(s) | 535, 820, 856, 908, 1150, 1375, 1498 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 3093, 3125 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 3330, 3362, 3847, 3879 |
| Alw21I | GWGCWC | 2 cut(s) | 3170, 3851 |
| Alw26I | GTCTC | 7 cut(s) | 204, 1846, 1856, 1975, 2634, 2787, 3461 |
| AlwI | GGATC | 5 cut(s) | 77, 402, 570, 629, 930 |
| AlwNI | CAGNNNCTG | 6 cut(s) | 71, 1321, 1568, 1984, 3143, 3464 |
| Ama87I | CYCGRG | 2 cut(s) | 2482, 2723 |
| AoxI | GGCC | 2 cut(s) | 295, 3237 |
| ArsI | GACNNNNNNTTYG | 6 cut(s) | 59, 91, 3008, 3040, 3886, 3918 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 419, 2523, 3177 |
| AspA2I | CCTAGG | 1 cut(s) | 3035 |
| AspLEI | GCGC | 2 cut(s) | 1000, 1550 |
| AspS9I | GGNCC | 3 cut(s) | 1522, 2193, 2939 |
| AsuII | TTCGAA | 1 cut(s) | 242 |
| AsuNHI | GCTAGC | 1 cut(s) | 2533 |
| AvaI | CYCGRG | 2 cut(s) | 2482, 2723 |
| AvaII | GGWCC | 3 cut(s) | 1522, 2193, 2939 |
| AvrII | CCTAGG | 1 cut(s) | 3035 |
| AxyI | CCTNAGG | 1 cut(s) | 669 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1077, 1110 |
| BanI | GGYRCC | 3 cut(s) | 46, 457, 682 |
| BanII | GRGCYC | 1 cut(s) | 3793 |
| BbsI | GAAGAC | 2 cut(s) | 626, 1917 |
| Bbv12I | GWGCWC | 2 cut(s) | 3170, 3851 |
| BccI | CCATC | 9 cut(s) | 172, 646, 1320, 1721, 2325, 2411, 2750, 3266, 3941 |
| BceAI | ACGGC | 1 cut(s) | 3252 |
| BciT130I | CCWGG | 7 cut(s) | 537, 822, 858, 910, 1152, 1377, 1500 |
| BclI | TGATCA | 1 cut(s) | 3115 |
| BcoDI | GTCTC | 7 cut(s) | 204, 1846, 1856, 1975, 2634, 2787, 3461 |
| BfmI | CTRYAG | 8 cut(s) | 63, 765, 1132, 2061, 2336, 2919, 2968, 3982 |
| BfuAI | ACCTGC | 1 cut(s) | 352 |
| BglII | AGATCT | 1 cut(s) | 1840 |
| BlnI | CCTAGG | 1 cut(s) | 3035 |
| BlpI | GCTNAGC | 1 cut(s) | 3362 |
| BmcAI | AGTACT | 1 cut(s) | 2480 |
| Bme1390I | CCNGG | 7 cut(s) | 537, 822, 858, 910, 1152, 1377, 1500 |
| Bme18I | GGWCC | 3 cut(s) | 1522, 2193, 2939 |
| BmeT110I | CYCGRG | 2 cut(s) | 2482, 2723 |
| BmgBI | CACGTC | 1 cut(s) | 532 |
| BmgT120I | GGNCC | 3 cut(s) | 1522, 2193, 2939 |
| BmrFI | CCNGG | 7 cut(s) | 537, 822, 858, 910, 1152, 1377, 1500 |
| BmrI | ACTGGG | 1 cut(s) | 2361 |
| BmsI | GCATC | 6 cut(s) | 1124, 1858, 2129, 2217, 2298, 3692 |
| BmtI | GCTAGC | 1 cut(s) | 2537 |
| BmuI | ACTGGG | 1 cut(s) | 2361 |
| BoxI | GACNNNNGTC | 1 cut(s) | 3984 |
| BpiI | GAAGAC | 2 cut(s) | 626, 1917 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 325, 357, 2107, 2139 |
| BpmI | CTGGAG | 2 cut(s) | 1584, 1590 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1872, 3640 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 3362 |
| Bpu14I | TTCGAA | 1 cut(s) | 242 |
| BpuEI | CTTGAG | 2 cut(s) | 1643, 2362 |
| BsaAI | YACGTR | 1 cut(s) | 2987 |
| BsaJI | CCNNGG | 5 cut(s) | 873, 1175, 1201, 2839, 3035 |
| BsaWI | WCCGGW | 1 cut(s) | 2450 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 3499, 3529 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 1134, 1245, 3518 |
| Bse21I | CCTNAGG | 1 cut(s) | 669 |
| Bse3DI | GCAATG | 5 cut(s) | 87, 1367, 3319, 3603, 3890 |
| BseBI | CCWGG | 7 cut(s) | 537, 822, 858, 910, 1152, 1377, 1500 |
| BseDI | CCNNGG | 5 cut(s) | 873, 1175, 1201, 2839, 3035 |
| BseGI | GGATG | 7 cut(s) | 2472, 2719, 3067, 3707, 3835, 3866, 3956 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 1134, 1245, 3518 |
| BseMI | GCAATG | 5 cut(s) | 87, 1367, 3319, 3603, 3890 |
| BseRI | GAGGAG | 3 cut(s) | 607, 1640, 2087 |
| BsgI | GTGCAG | 2 cut(s) | 3167, 3896 |
| Bsh1236I | CGCG | 1 cut(s) | 1540 |
| BshFI | GGCC | 2 cut(s) | 297, 3239 |
| BshNI | GGYRCC | 3 cut(s) | 46, 457, 682 |
| BsiHKAI | GWGCWC | 2 cut(s) | 3170, 3851 |
| BsiHKCI | CYCGRG | 2 cut(s) | 2482, 2723 |
| BsiSI | CCGG | 2 cut(s) | 580, 2451 |
| BslFI | GGGAC | 7 cut(s) | 198, 968, 1294, 1535, 2069, 2718, 3647 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 1134, 1245, 3518 |
| BsmAI | GTCTC | 7 cut(s) | 204, 1846, 1856, 1975, 2634, 2787, 3461 |
| BsmFI | GGGAC | 7 cut(s) | 198, 968, 1294, 1535, 2069, 2718, 3647 |
| BsmI | GAATGC | 2 cut(s) | 1122, 3193 |
| BsnI | GGCC | 2 cut(s) | 297, 3239 |
| BsoBI | CYCGRG | 2 cut(s) | 2482, 2723 |
| Bsp119I | TTCGAA | 1 cut(s) | 242 |
| Bsp1286I | GDGCHC | 3 cut(s) | 3170, 3793, 3851 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 3362 |
| Bsp19I | CCATGG | 1 cut(s) | 873 |
| BspACI | CCGC | 7 cut(s) | 491, 1021, 1224, 1538, 2057, 3002, 3445 |
| BspANI | GGCC | 2 cut(s) | 297, 3239 |
| BspFNI | CGCG | 1 cut(s) | 1540 |
| BspHI | TCATGA | 2 cut(s) | 925, 2932 |
| BspMAI | CTGCAG | 3 cut(s) | 769, 2340, 2972 |
| BspMI | ACCTGC | 1 cut(s) | 352 |
| BspOI | GCTAGC | 1 cut(s) | 2537 |
| BspPI | GGATC | 5 cut(s) | 77, 402, 570, 629, 930 |
| BspT104I | TTCGAA | 1 cut(s) | 242 |
| BspT107I | GGYRCC | 3 cut(s) | 46, 457, 682 |
| BsrDI | GCAATG | 5 cut(s) | 87, 1367, 3319, 3603, 3890 |
| BssECI | CCNNGG | 5 cut(s) | 873, 1175, 1201, 2839, 3035 |
| BssNAI | GTATAC | 1 cut(s) | 1711 |
| BssT1I | CCWWGG | 3 cut(s) | 873, 2839, 3035 |
| Bst1107I | GTATAC | 1 cut(s) | 1711 |
| Bst2UI | CCWGG | 7 cut(s) | 537, 822, 858, 910, 1152, 1377, 1500 |
| Bst6I | CTCTTC | 4 cut(s) | 584, 1005, 2124, 3585 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 689, 1128, 1953 |
| BstBAI | YACGTR | 1 cut(s) | 2987 |
| BstBI | TTCGAA | 1 cut(s) | 242 |
| BstC8I | GCNNGC | 5 cut(s) | 769, 2268, 2535, 2899, 3637 |
| BstDSI | CCRYGG | 2 cut(s) | 873, 1201 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 1132, 3516 |
| BstF5I | GGATG | 7 cut(s) | 2472, 2719, 3067, 3707, 3835, 3866, 3956 |
| BstFNI | CGCG | 1 cut(s) | 1540 |
| BstHHI | GCGC | 2 cut(s) | 1000, 1550 |
| BstMAI | GTCTC | 7 cut(s) | 204, 1846, 1856, 1975, 2634, 2787, 3461 |
| BstNI | CCWGG | 7 cut(s) | 537, 822, 858, 910, 1152, 1377, 1500 |
| BstNSI | RCATGY | 4 cut(s) | 2057, 2270, 2574, 3555 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 3984 |
| BstSCI | CCNGG | 7 cut(s) | 535, 820, 856, 908, 1150, 1375, 1498 |
| BstSFI | CTRYAG | 8 cut(s) | 63, 765, 1132, 2061, 2336, 2919, 2968, 3982 |
| BstUI | CGCG | 1 cut(s) | 1540 |
| BstV2I | GAAGAC | 2 cut(s) | 626, 1917 |
| BstX2I | RGATCY | 2 cut(s) | 82, 1840 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 972, 3026, 3424 |
| BstYI | RGATCY | 2 cut(s) | 82, 1840 |
| BstZ17I | GTATAC | 1 cut(s) | 1711 |
| Bsu36I | CCTNAGG | 1 cut(s) | 669 |
| BsuRI | GGCC | 2 cut(s) | 297, 3239 |
| BtgI | CCRYGG | 2 cut(s) | 873, 1201 |
| BtgZI | GCGATG | 1 cut(s) | 648 |
| BtrI | CACGTC | 1 cut(s) | 532 |
| BtsCI | GGATG | 7 cut(s) | 2472, 2719, 3067, 3707, 3835, 3866, 3956 |
| BtsI | GCAGTG | 2 cut(s) | 1611, 2977 |
| BveI | ACCTGC | 1 cut(s) | 352 |
| Cac8I | GCNNGC | 5 cut(s) | 769, 2268, 2535, 2899, 3637 |
| CaiI | CAGNNNCTG | 6 cut(s) | 71, 1321, 1568, 1984, 3143, 3464 |
| CciI | TCATGA | 2 cut(s) | 925, 2932 |
| CfoI | GCGC | 2 cut(s) | 1000, 1550 |
| Cfr13I | GGNCC | 3 cut(s) | 1522, 2193, 2939 |
| CseI | GACGC | 3 cut(s) | 1265, 1529, 3896 |
| CsiI | ACCWGGT | 2 cut(s) | 820, 1375 |
| Csp6I | GTAC | 7 cut(s) | 762, 976, 1142, 1814, 2221, 2479, 2984 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1350, 1385 |
| CviQI | GTAC | 7 cut(s) | 762, 976, 1142, 1814, 2221, 2479, 2984 |
| DraIII | CACNNNGTG | 2 cut(s) | 2282, 2393 |
| EaeI | YGGCCR | 1 cut(s) | 3237 |
| Eam1104I | CTCTTC | 4 cut(s) | 584, 1005, 2124, 3585 |
| EarI | CTCTTC | 4 cut(s) | 584, 1005, 2124, 3585 |
| Eco130I | CCWWGG | 3 cut(s) | 873, 2839, 3035 |
| Eco24I | GRGCYC | 1 cut(s) | 3793 |
| Eco47I | GGWCC | 3 cut(s) | 1522, 2193, 2939 |
| Eco57I | CTGAAG | 5 cut(s) | 785, 1961, 2496, 3183, 3638 |
| Eco81I | CCTNAGG | 1 cut(s) | 669 |
| Eco88I | CYCGRG | 2 cut(s) | 2482, 2723 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 1132, 3516 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1522 |
| EcoRII | CCWGG | 7 cut(s) | 535, 820, 856, 908, 1150, 1375, 1498 |
| EcoT14I | CCWWGG | 3 cut(s) | 873, 2839, 3035 |
| EcoT38I | GRGCYC | 1 cut(s) | 3793 |
| ErhI | CCWWGG | 3 cut(s) | 873, 2839, 3035 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 3496, 3528 |
| FaqI | GGGAC | 7 cut(s) | 198, 968, 1294, 1535, 2069, 2718, 3647 |
| FauNDI | CATATG | 1 cut(s) | 3935 |
| FbaI | TGATCA | 1 cut(s) | 3115 |
| FblI | GTMKAC | 4 cut(s) | 1710, 2187, 3041, 3149 |
| FokI | GGATG | 7 cut(s) | 2459, 2706, 3074, 3714, 3842, 3873, 3963 |
| FriOI | GRGCYC | 1 cut(s) | 3793 |
| GlaI | GCGC | 2 cut(s) | 999, 1549 |
| GsuI | CTGGAG | 2 cut(s) | 1584, 1590 |
| HaeIII | GGCC | 2 cut(s) | 297, 3239 |
| HapII | CCGG | 2 cut(s) | 580, 2451 |
| HgaI | GACGC | 3 cut(s) | 1265, 1529, 3896 |
| HhaI | GCGC | 2 cut(s) | 1000, 1550 |
| Hin6I | GCGC | 2 cut(s) | 998, 1548 |
| HinP1I | GCGC | 2 cut(s) | 998, 1548 |
| HincII | GTYRAC | 2 cut(s) | 235, 3259 |
| HindII | GTYRAC | 2 cut(s) | 235, 3259 |
| HindIII | AAGCTT | 3 cut(s) | 33, 417, 3324 |
| HpaII | CCGG | 2 cut(s) | 580, 2451 |
| Hpy166II | GTNNAC | 9 cut(s) | 235, 818, 1711, 2188, 2396, 3042, 3150, 3259, 3278 |
| Hpy8I | GTNNAC | 9 cut(s) | 235, 818, 1711, 2188, 2396, 3042, 3150, 3259, 3278 |
| Hpy99I | CGWCG | 2 cut(s) | 1281, 1721 |
| HpyAV | CCTTC | 9 cut(s) | 238, 319, 752, 809, 1830, 2520, 2643, 3512, 3761 |
| HpyCH4IV | ACGT | 9 cut(s) | 531, 814, 835, 915, 1254, 1922, 2986, 3817, 3997 |
| HpySE526I | ACGT | 9 cut(s) | 531, 814, 835, 915, 1254, 1922, 2986, 3817, 3997 |
| HspAI | GCGC | 2 cut(s) | 998, 1548 |
| KflI | GGGWCCC | 1 cut(s) | 1522 |
| Ksp22I | TGATCA | 1 cut(s) | 3115 |
| LmnI | GCTCC | 5 cut(s) | 1394, 2530, 2876, 3134, 3418 |
| LweI | GCATC | 6 cut(s) | 1124, 1858, 2129, 2217, 2298, 3692 |
| MabI | ACCWGGT | 2 cut(s) | 820, 1375 |
| MaeII | ACGT | 9 cut(s) | 531, 814, 835, 915, 1254, 1922, 2986, 3817, 3997 |
| MfeI | CAATTG | 1 cut(s) | 2154 |
| MflI | RGATCY | 2 cut(s) | 82, 1840 |
| MhlI | GDGCHC | 3 cut(s) | 3170, 3793, 3851 |
| MlyI | GAGTC | 6 cut(s) | 2146, 2636, 2789, 3470, 3517, 3655 |
| MmeI | TCCRAC | 2 cut(s) | 807, 2898 |
| MroXI | GAANNNNTTC | 3 cut(s) | 419, 2523, 3177 |
| MslI | CAYNNNNRTG | 4 cut(s) | 3273, 3816, 3828, 3934 |
| MspA1I | CMGCKG | 2 cut(s) | 1321, 1565 |
| MspI | CCGG | 2 cut(s) | 580, 2451 |
| MspR9I | CCNGG | 7 cut(s) | 537, 822, 858, 910, 1152, 1377, 1500 |
| MunI | CAATTG | 1 cut(s) | 2154 |
| Mva1269I | GAATGC | 2 cut(s) | 1122, 3193 |
| MvaI | CCWGG | 7 cut(s) | 537, 822, 858, 910, 1152, 1377, 1500 |
| MvnI | CGCG | 1 cut(s) | 1540 |
| NcoI | CCATGG | 1 cut(s) | 873 |
| NdeI | CATATG | 1 cut(s) | 3935 |
| NheI | GCTAGC | 1 cut(s) | 2533 |
| NmuCI | GTSAC | 7 cut(s) | 1165, 2274, 2592, 2764, 3014, 3046, 4015 |
| NspI | RCATGY | 4 cut(s) | 2057, 2270, 2574, 3555 |
| NspV | TTCGAA | 1 cut(s) | 242 |
| PaeI | GCATGC | 1 cut(s) | 2270 |
| PaeR7I | CTCGAG | 1 cut(s) | 2482 |
| PagI | TCATGA | 2 cut(s) | 925, 2932 |
| PciI | ACATGT | 2 cut(s) | 2570, 3551 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 1390, 3994 |
| PctI | GAATGC | 2 cut(s) | 1122, 3193 |
| PdmI | GAANNNNTTC | 3 cut(s) | 419, 2523, 3177 |
| PfeI | GAWTC | 5 cut(s) | 716, 1194, 2441, 2500, 3455 |
| PflFI | GACNNNGTC | 2 cut(s) | 1339, 1888 |
| PleI | GAGTC | 6 cut(s) | 2145, 2636, 2789, 3469, 3516, 3654 |
| PpsI | GAGTC | 6 cut(s) | 2145, 2636, 2789, 3469, 3516, 3654 |
| Ppu21I | YACGTR | 1 cut(s) | 2987 |
| PpuMI | RGGWCCY | 1 cut(s) | 1522 |
| PscI | ACATGT | 2 cut(s) | 2570, 3551 |
| PshAI | GACNNNNGTC | 1 cut(s) | 3984 |
| Psp5II | RGGWCCY | 1 cut(s) | 1522 |
| Psp6I | CCWGG | 7 cut(s) | 535, 820, 856, 908, 1150, 1375, 1498 |
| PspGI | CCWGG | 7 cut(s) | 535, 820, 856, 908, 1150, 1375, 1498 |
| PspPI | GGNCC | 3 cut(s) | 1522, 2193, 2939 |
| PspPPI | RGGWCCY | 1 cut(s) | 1522 |
| PstI | CTGCAG | 3 cut(s) | 769, 2340, 2972 |
| PstNI | CAGNNNCTG | 6 cut(s) | 71, 1321, 1568, 1984, 3143, 3464 |
| PsuI | RGATCY | 2 cut(s) | 82, 1840 |
| PsyI | GACNNNGTC | 2 cut(s) | 1339, 1888 |
| PvuII | CAGCTG | 2 cut(s) | 1321, 1565 |
| RsaI | GTAC | 7 cut(s) | 763, 977, 1143, 1815, 2222, 2480, 2985 |
| RsaNI | GTAC | 7 cut(s) | 762, 976, 1142, 1814, 2221, 2479, 2984 |
| RseI | CAYNNNNRTG | 4 cut(s) | 3273, 3816, 3828, 3934 |
| Sau96I | GGNCC | 3 cut(s) | 1522, 2193, 2939 |
| ScaI | AGTACT | 1 cut(s) | 2480 |
| SchI | GAGTC | 6 cut(s) | 2146, 2636, 2789, 3470, 3517, 3655 |
| ScrFI | CCNGG | 7 cut(s) | 537, 822, 858, 910, 1152, 1377, 1500 |
| SduI | GDGCHC | 3 cut(s) | 3170, 3793, 3851 |
| SexAI | ACCWGGT | 2 cut(s) | 820, 1375 |
| SfaNI | GCATC | 6 cut(s) | 1124, 1858, 2129, 2217, 2298, 3692 |
| SfcI | CTRYAG | 8 cut(s) | 63, 765, 1132, 2061, 2336, 2919, 2968, 3982 |
| Sfr274I | CTCGAG | 1 cut(s) | 2482 |
| SfuI | TTCGAA | 1 cut(s) | 242 |
| SinI | GGWCC | 3 cut(s) | 1522, 2193, 2939 |
| SlaI | CTCGAG | 1 cut(s) | 2482 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 3273, 3816, 3828, 3934 |
| SmlI | CTYRAG | 3 cut(s) | 1622, 2377, 2482 |
| SmoI | CTYRAG | 3 cut(s) | 1622, 2377, 2482 |
| SphI | GCATGC | 1 cut(s) | 2270 |
| SsiI | CCGC | 7 cut(s) | 491, 1021, 1224, 1538, 2057, 3002, 3445 |
| SspI | AATATT | 1 cut(s) | 3055 |
| StyD4I | CCNGG | 7 cut(s) | 535, 820, 856, 908, 1150, 1375, 1498 |
| StyI | CCWWGG | 3 cut(s) | 873, 2839, 3035 |
| TaiI | ACGT | 9 cut(s) | 534, 817, 838, 918, 1257, 1925, 2989, 3820, 4000 |
| TatI | WGTACW | 1 cut(s) | 2478 |
| TauI | GCSGC | 3 cut(s) | 494, 1226, 2060 |
| TfiI | GAWTC | 5 cut(s) | 716, 1194, 2441, 2500, 3455 |
| TseFI | GTSAC | 7 cut(s) | 1165, 2274, 2592, 2764, 3014, 3046, 4015 |
| Tsp45I | GTSAC | 7 cut(s) | 1165, 2274, 2592, 2764, 3014, 3046, 4015 |
| TspGWI | ACGGA | 1 cut(s) | 2952 |
| Tth111I | GACNNNGTC | 2 cut(s) | 1339, 1888 |
| VpaK11BI | GGWCC | 3 cut(s) | 1522, 2193, 2939 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 1132, 3516 |
| XbaI | TCTAGA | 1 cut(s) | 1928 |
| XceI | RCATGY | 4 cut(s) | 2057, 2270, 2574, 3555 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1754 |
| XhoI | CTCGAG | 1 cut(s) | 2482 |
| XmaJI | CCTAGG | 1 cut(s) | 3035 |
| XmiI | GTMKAC | 4 cut(s) | 1710, 2187, 3041, 3149 |
| XmnI | GAANNNNTTC | 3 cut(s) | 419, 2523, 3177 |
| ZrmI | AGTACT | 1 cut(s) | 2480 |