Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0005507

Physical Location & Seq

Genomic Coordinates Reverse (-)

41908788 .. 41912217

Gene Structure 3430 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0303000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGACAAGCGTGCCAAGTCTGTTTGTGGATCCAATGAATTGTCTGGATCATCTGAGATGCTCAATAGCTCTGTAGCTATTTCTACTGCCGAATCTAAGCCATTGAGGATTGGAGGAGATGAGCGTTTGGGTTCTGAGGAATTTGGGGAGTCCTCCACTGCCAATTCTGTGCCTATGATTCCTGCTGCTTCTGGAACATCTGAGTTGGTCTCTAGCACTGCAGCTAGAGCTTCTGTCCAACCTAAGGCAGTGAGGATTGGAGGTGCTGATTCGTTGGGTTTTGAGGGATTTGGGGAATCCTCCATTGCTAATTCTGTGCTTGCGAACTATGAATCCTCTGGATTGACTTGTGTGTCTGGATCAGCTGCATCTTCTGGATTCCAAAAGCCTATGACTGCTGCTGCTCCTGGGTCATTAGCTGGACCATCTGAGTTGGTCTCTATCTCTGGAGATGGATCTTCTGGCCAACCTAAAGCATTGAGGATTGGAGGTGCTGAGTCGTTAGTCTCTATCTCTGGGGAATCCTTCATTGCTGATCCTGTGGGGAAGAGAAAAGGTATGCGTAAGAAGCATTTCCGCAAGAGGGATTTTACCCTGAGTGAGGAGGGCAGTCATGTTACCCCGAGTGAGGAGGGCAGTCATGAGCATGAGGTTTTCGGTTCAGATGATGAATCATCATTGTTTGGTGGTTACTATAAGCTGCTATTTGCAGAGGAAGAACACTTGTCAGAAAAGGAGAAACAAGATCATTTCGTAAAGGAGAAGATTCTGACTACCCCCATTCCTCCTATCACGAACACTTTTGATAGGCCTAGCTGTCTGGTTGAGTATGGCAGACCTGTTTTGGGCGGTGTCCCGGTCAAATACCGGCAATTCTCTTGGGATAGATTTGATCACTTGGAATCCCAAGAGAGTCATGATCTTTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003700 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008214 GO:0009653 GO:0009719 GO:0009725 GO:0009741 GO:0009826 GO:0009889 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0014070 GO:0016043 GO:0016049 GO:0016569 GO:0016570 GO:0016577 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0032451 GO:0032452 GO:0032502 GO:0032989 GO:0033169 GO:0033993 GO:0036211 GO:0040007 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045814 GO:0048519 GO:0048577 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048587 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0051276 GO:0060255 GO:0060560 GO:0065007 GO:0070076 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0140096 GO:0140110 GO:1901564 GO:1901700 GO:1903506 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

JmjC JmjN zf-C2H2

Protein Analysis

309

Amino Acids

32.79

Weight (kDa)

5.22

Isoelectric Point (pI)

44.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005507)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04240
fragaria_vesca	FvH4_7g19090 FvH4_7g19090 FvH4_7g19090 FvH4_7g19090 FvH4_7g19090 FvH4_7g19090 FvH4_7g19090 FvH4_7g19090 FvH4_7g19090
malus_domestica	MD01G1106000.v1.1 MD07G1172400.v1.1
prunus_persica	Prupe.2G211400_v2.0.a1 Prupe.2G211400_v2.0.a1
pyrus_communis	pycom01g13280 pycom07g16690
rosa_chinensis	RchiOBHm_Chr1g0362971
rosa_laevigata	RLG00000027605
rosa_multiflora	Rmu_sc0000174.1_g000009
rosa_roxburghii	Rroxscaffold_4G00293590
rosa_rugosa	Rorug01G0302900 Rorug01G0303000 Rorug01G0303100 Rorug01G0303200
rosa_samantha	Rh1AG312100 Rh1BG275600 Rh1CG292500 Rh1DG306300
rosa_wichuraiana	Rw1G027660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	352
AciI	CCGC	2 cut(s)	577, 849
AclWI	GGATC	6 cut(s)	24, 37, 55, 367, 463, 530
AcoI	YGGCCR	1 cut(s)	463
AcsI	RAATTY	1 cut(s)	140
AfiI	CCNNNNNNNGG	5 cut(s)	244, 583, 601, 628, 845
AjnI	CCWGG	1 cut(s)	406
AloI	GAACNNNNNNTCC	2 cut(s)	317, 349
AluBI	AGCT	8 cut(s)	69, 77, 224, 230, 365, 419, 700, 816
AluI	AGCT	8 cut(s)	69, 77, 224, 230, 365, 419, 700, 816
Alw26I	GTCTC	3 cut(s)	214, 442, 511
AlwI	GGATC	6 cut(s)	24, 37, 55, 367, 463, 530
Ama87I	CYCGRG	1 cut(s)	622
AoxI	GGCC	2 cut(s)	463, 809
ApeKI	GCWGC	6 cut(s)	185, 221, 365, 398, 401, 700
ApoI	RAATTY	1 cut(s)	140
Asp700I	GAANNNNTTC	1 cut(s)	572
AspS9I	GGNCC	1 cut(s)	422
AsuC2I	CCSGG	1 cut(s)	857
AvaI	CYCGRG	1 cut(s)	622
AvaII	GGWCC	1 cut(s)	422
AxyI	CCTNAGG	1 cut(s)	243
BalI	TGGCCA	1 cut(s)	465
BamHI	GGATCC	1 cut(s)	29
BbvI	GCAGC	6 cut(s)	172, 233, 352, 385, 388, 687
BccI	CCATC	2 cut(s)	433, 446
BciT130I	CCWGG	1 cut(s)	408
BclI	TGATCA	1 cut(s)	892
BcnI	CCSGG	1 cut(s)	857
BcoDI	GTCTC	3 cut(s)	214, 442, 511
BfaI	CTAG	3 cut(s)	213, 225, 813
BfmI	CTRYAG	2 cut(s)	72, 219
BisI	GCNGC	6 cut(s)	186, 222, 366, 399, 402, 701
BlsI	GCNGC	6 cut(s)	187, 223, 367, 400, 403, 702
Bme1390I	CCNGG	2 cut(s)	408, 857
Bme18I	GGWCC	1 cut(s)	422
BmeT110I	CYCGRG	1 cut(s)	622
BmgT120I	GGNCC	1 cut(s)	422
BmiI	GGNNCC	1 cut(s)	31
BmrFI	CCNGG	2 cut(s)	408, 857
BmsI	GCATC	2 cut(s)	48, 377
BplI	GAGNNNNNCTC	4 cut(s)	194, 226, 422, 454
BpmI	CTGGAG	1 cut(s)	468
BpuMI	CCSGG	1 cut(s)	857
BsaI	GGTCTC	2 cut(s)	214, 442
BsaJI	CCNNGG	1 cut(s)	407
Bsc4I	CCNNNNNNNGG	5 cut(s)	244, 583, 601, 628, 845
Bse118I	RCCGGY	1 cut(s)	867
Bse21I	CCTNAGG	1 cut(s)	243
Bse3DI	GCAATG	2 cut(s)	303, 528
BseBI	CCWGG	1 cut(s)	408
BseDI	CCNNGG	1 cut(s)	407
BseLI	CCNNNNNNNGG	5 cut(s)	244, 583, 601, 628, 845
BseMI	GCAATG	2 cut(s)	303, 528
BseMII	CTCAG	6 cut(s)	45, 126, 192, 420, 486, 587
BseRI	GAGGAG	3 cut(s)	129, 617, 644
BseXI	GCAGC	6 cut(s)	172, 233, 352, 385, 388, 687
BshFI	GGCC	2 cut(s)	465, 811
BsiHKCI	CYCGRG	1 cut(s)	622
BsiSI	CCGG	2 cut(s)	857, 868
BslFI	GGGAC	1 cut(s)	839
BslI	CCNNNNNNNGG	5 cut(s)	244, 583, 601, 628, 845
BsmAI	GTCTC	3 cut(s)	214, 442, 511
BsmFI	GGGAC	1 cut(s)	839
BsnI	GGCC	2 cut(s)	465, 811
Bso31I	GGTCTC	2 cut(s)	214, 442
BsoBI	CYCGRG	1 cut(s)	622
Bsp143I	GATC	8 cut(s)	29, 47, 359, 455, 535, 745, 892, 919
BspACI	CCGC	2 cut(s)	577, 849
BspANI	GGCC	2 cut(s)	465, 811
BspCNI	CTCAG	6 cut(s)	46, 127, 193, 421, 487, 588
BspHI	TCATGA	2 cut(s)	640, 916
BspLI	GGNNCC	1 cut(s)	31
BspMAI	CTGCAG	1 cut(s)	223
BspPI	GGATC	6 cut(s)	24, 37, 55, 367, 463, 530
BspTNI	GGTCTC	2 cut(s)	214, 442
BsrDI	GCAATG	2 cut(s)	303, 528
BsrFI	RCCGGY	1 cut(s)	867
BssAI	RCCGGY	1 cut(s)	867
BssECI	CCNNGG	1 cut(s)	407
BssMI	GATC	8 cut(s)	29, 47, 359, 455, 535, 745, 892, 919
Bst2UI	CCWGG	1 cut(s)	408
Bst6I	CTCTTC	1 cut(s)	542
BstC8I	GCNNGC	2 cut(s)	12, 321
BstDEI	CTNAG	8 cut(s)	54, 96, 135, 201, 243, 429, 495, 596
BstENI	CCTNNNNNAGG	1 cut(s)	599
BstKTI	GATC	8 cut(s)	32, 50, 362, 458, 538, 748, 895, 922
BstMAI	GTCTC	3 cut(s)	214, 442, 511
BstMBI	GATC	8 cut(s)	29, 47, 359, 455, 535, 745, 892, 919
BstMWI	GCNNNNNNNGC	2 cut(s)	227, 568
BstNI	CCWGG	1 cut(s)	408
BstSCI	CCNGG	2 cut(s)	406, 855
BstSFI	CTRYAG	2 cut(s)	72, 219
BstV1I	GCAGC	6 cut(s)	172, 233, 352, 385, 388, 687
BstX2I	RGATCY	2 cut(s)	29, 455
BstYI	RGATCY	2 cut(s)	29, 455
Bsu36I	CCTNAGG	1 cut(s)	243
BsuRI	GGCC	2 cut(s)	465, 811
BtsI	GCAGTG	3 cut(s)	156, 216, 255
BtsIMutI	CAGTG	3 cut(s)	156, 216, 255
Cac8I	GCNNGC	2 cut(s)	12, 321
CciI	TCATGA	2 cut(s)	640, 916
Cfr10I	RCCGGY	1 cut(s)	867
Cfr13I	GGNCC	1 cut(s)	422
CviAII	CATG	4 cut(s)	614, 641, 647, 917
DdeI	CTNAG	8 cut(s)	54, 96, 135, 201, 243, 429, 495, 596
DpnI	GATC	8 cut(s)	31, 49, 361, 457, 537, 747, 894, 921
DpnII	GATC	8 cut(s)	29, 47, 359, 455, 535, 745, 892, 919
DrdI	GACNNNNNNGTC	1 cut(s)	352
DseDI	GACNNNNNNGTC	1 cut(s)	352
EaeI	YGGCCR	1 cut(s)	463
Eam1104I	CTCTTC	1 cut(s)	542
EarI	CTCTTC	1 cut(s)	542
Eco147I	AGGCCT	1 cut(s)	811
Eco31I	GGTCTC	2 cut(s)	214, 442
Eco47I	GGWCC	1 cut(s)	422
Eco81I	CCTNAGG	1 cut(s)	243
Eco88I	CYCGRG	1 cut(s)	622
EcoNI	CCTNNNNNAGG	1 cut(s)	599
EcoRII	CCWGG	1 cut(s)	406
FaeI	CATG	4 cut(s)	617, 644, 650, 920
FaqI	GGGAC	1 cut(s)	839
FatI	CATG	4 cut(s)	613, 640, 646, 916
FbaI	TGATCA	1 cut(s)	892
Fnu4HI	GCNGC	6 cut(s)	186, 222, 366, 399, 402, 701
Fsp4HI	GCNGC	6 cut(s)	186, 222, 366, 399, 402, 701
FspBI	CTAG	3 cut(s)	213, 225, 813
GluI	GCNGC	6 cut(s)	186, 222, 366, 399, 402, 701
GsuI	CTGGAG	1 cut(s)	468
HaeIII	GGCC	2 cut(s)	465, 811
HapII	CCGG	2 cut(s)	857, 868
Hin1II	CATG	4 cut(s)	617, 644, 650, 920
HpaII	CCGG	2 cut(s)	857, 868
Hpy188I	TCNGA	7 cut(s)	55, 136, 202, 430, 664, 730, 771
Hpy188III	TCNNGA	9 cut(s)	45, 192, 339, 357, 375, 447, 641, 793, 917
HpyAV	CCTTC	1 cut(s)	535
HpyCH4V	TGCA	3 cut(s)	221, 368, 710
HpyF10VI	GCNNNNNNNGC	2 cut(s)	227, 568
HpyF3I	CTNAG	8 cut(s)	54, 96, 135, 201, 243, 429, 495, 596
Hsp92II	CATG	4 cut(s)	617, 644, 650, 920
Ksp22I	TGATCA	1 cut(s)	892
Kzo9I	GATC	8 cut(s)	29, 47, 359, 455, 535, 745, 892, 919
LmnI	GCTCC	1 cut(s)	409
Lsp1109I	GCAGC	6 cut(s)	172, 233, 352, 385, 388, 687
LweI	GCATC	2 cut(s)	48, 377
MaeI	CTAG	3 cut(s)	213, 225, 813
MaeIII	GTNAC	2 cut(s)	616, 689
MalI	GATC	8 cut(s)	31, 49, 361, 457, 537, 747, 894, 921
MboI	GATC	8 cut(s)	29, 47, 359, 455, 535, 745, 892, 919
MboII	GAAGA	5 cut(s)	363, 450, 559, 728, 775
MflI	RGATCY	2 cut(s)	29, 455
MlsI	TGGCCA	1 cut(s)	465
MluCI	AATT	5 cut(s)	38, 140, 163, 310, 872
MluNI	TGGCCA	1 cut(s)	465
MlyI	GAGTC	3 cut(s)	158, 506, 922
MmeI	TCCRAC	1 cut(s)	262
Mox20I	TGGCCA	1 cut(s)	465
MroXI	GAANNNNTTC	1 cut(s)	572
MscI	TGGCCA	1 cut(s)	465
MslI	CAYNNNNRTG	1 cut(s)	645
Msp20I	TGGCCA	1 cut(s)	465
MspA1I	CMGCKG	1 cut(s)	365
MspI	CCGG	2 cut(s)	857, 868
MspR9I	CCNGG	2 cut(s)	408, 857
MvaI	CCWGG	1 cut(s)	408
MwoI	GCNNNNNNNGC	2 cut(s)	227, 568
NciI	CCSGG	1 cut(s)	857
NdeII	GATC	8 cut(s)	29, 47, 359, 455, 535, 745, 892, 919
NlaIII	CATG	4 cut(s)	617, 644, 650, 920
NlaIV	GGNNCC	1 cut(s)	31
PagI	TCATGA	2 cut(s)	640, 916
PceI	AGGCCT	1 cut(s)	811
PdmI	GAANNNNTTC	1 cut(s)	572
PkrI	GCNGC	6 cut(s)	187, 223, 367, 400, 403, 702
PleI	GAGTC	3 cut(s)	157, 505, 921
PpsI	GAGTC	3 cut(s)	157, 505, 921
Psp6I	CCWGG	1 cut(s)	406
PspGI	CCWGG	1 cut(s)	406
PspN4I	GGNNCC	1 cut(s)	31
PspPI	GGNCC	1 cut(s)	422
PstI	CTGCAG	1 cut(s)	223
PsuI	RGATCY	2 cut(s)	29, 455
PvuII	CAGCTG	1 cut(s)	365
RseI	CAYNNNNRTG	1 cut(s)	645
SatI	GCNGC	6 cut(s)	186, 222, 366, 399, 402, 701
Sau3AI	GATC	8 cut(s)	29, 47, 359, 455, 535, 745, 892, 919
Sau96I	GGNCC	1 cut(s)	422
SchI	GAGTC	3 cut(s)	158, 506, 922
ScrFI	CCNGG	2 cut(s)	408, 857
SfaNI	GCATC	2 cut(s)	48, 377
SfcI	CTRYAG	2 cut(s)	72, 219
SinI	GGWCC	1 cut(s)	422
SmiMI	CAYNNNNRTG	1 cut(s)	645
Sse9I	AATT	5 cut(s)	38, 140, 163, 310, 872
SseBI	AGGCCT	1 cut(s)	811
SsiI	CCGC	2 cut(s)	577, 849
SspMI	CTAG	3 cut(s)	213, 225, 813
StuI	AGGCCT	1 cut(s)	811
StyD4I	CCNGG	2 cut(s)	406, 855
TasI	AATT	5 cut(s)	38, 140, 163, 310, 872
TscAI	CASTG	3 cut(s)	163, 223, 255
TseI	GCWGC	6 cut(s)	185, 221, 365, 398, 401, 700
TspDTI	ATGAA	4 cut(s)	51, 345, 517, 684
TspRI	CASTG	3 cut(s)	163, 223, 255
VpaK11BI	GGWCC	1 cut(s)	422
XagI	CCTNNNNNAGG	1 cut(s)	599
XapI	RAATTY	1 cut(s)	140
XmnI	GAANNNNTTC	1 cut(s)	572
XspI	CTAG	3 cut(s)	213, 225, 813

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.