Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0005507

Physical Location & Seq

Genomic Coordinates Reverse (-)

13768229 .. 13771932

Gene Structure 3704 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g13280.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3051 bp

ATGAGTTTGTATATGGAAAATATGAATGATTTGTATTTGGGAAGTGATGATTTATCACAGGACTTTCAAGTCGACTCAGGCACATTGGCATGCGTGGCTTGTGGAATACTTGGGTTTCCATTTATGTCTGTGGTGCAACCATCTGAGAAAGCATCAAAGGAGCTGCAAACTGAAAATTTTATGGCTCAAGGTTCCCCTGGGGTTTCAGGACTTGAAAAGTCTCATTCGTTTCCAGATTGTCACACATCTGTCAAGGGAAATGTTACAGAAGAGGACCTCGTTTCTGTTCCCAACGTTTCGCCACCTTCGAATGGTCCCTTAATTCCTTCCACAGCCAAGCTAAAAAAGGGTTGGAATACTGATAATAAATTTCTGAGACCAAGGAGTTTCTGCCTTGATCACGCTGTTGAAATTGTGGACCTGTTGCAGTGTAAAGGTGGAGCGAACATGCTTGTAATTTGCCATTCTGACTATCAAAAAATAAAGGCTCCTGCTGCAGCAATTGCAGAGGAGATTGGTTGCCCCTTTAAGTATAATGAGGTTCCTTTGGATATTGCGTCAAAGGAAGATCTGAATTTGATAGAGCTTGCAGTTGATGATGAACGTGATGAATGTGGAGAAGACTGGACCTCAAAGTTGGGTATCAACCTACGGTACTGTGTCAAGGTCAGAAAGAATTCATCCTCGAAGCAAGTCCAGCATGCATTGACATTGGGTGGCTTGTTCTCCAAACAAAGTCCCAGCTCAGATTTTCTAGCCGTCACATGGCAATCAAGAAGATCTCGATCTAAAAAGCTTAATCATCCAGCAGATTGTACACCATGTGAGAACGTTGAGGAAAAGGATGAAGTGGTGGGCAGAAGGTCAGATGGCACCTCTATTAAGAGGGAAGAAAAAATAATTCAATATTCAAGACGAAAGTCTAAGCTAAAGGCGGGGAGTTCTACAGGAACAGGTAGGGTCTTTGGGCACCCTGGTACAGGTGTTGAGGGTAGTAAAGACAGCAGAATGGCAACAGAAAGTAACATTTGCGGCATTGGGAATTCCACAAGCAGTGGTGCAATACTTGATTTCTCTGCGTCAAGCGGAATGTCTGAAATGTATCCTGTTGTCCAGATGTCTGAAGCAGCCACTGATATCAGTTTGTACTCTACTTCTTCACAAGTTTCAGAAACACTAACTGCCGCCACATTAATAGCTGGTAGTGTTGAGGCACAGGTCGAGAATCACAGTTCTGAAGAAAGAAACATGAAAGGTAACGGTTGTAAGTTAGCATCAAGGGATAATTCTGATATGCAAGATGAGATGAGGATTCTTGAAGAAGCCCATGAGAACAAGTCTGCTACTCCACCTGTCATTGCAGCTGATGAAAGTGTTCCAACGCAAATAGAGGAGCAGAAAATGGAAAAATTCAACAATACCAGTGACAATTGTAATCTAGTATCGGAGGGGCAGTCCCAAGTTTTGGCTCATGAGAATGCTCTGATGGATGACGTTTCTGTTCTTGCTGAGACAACAAATTTATGTGCTTCCGACTCAATTGTTACAAGTTCTGAGCCACAGACGGTGAATACAGTCCTGGAGAAATCTTGCATGAGCAATGAAATTTGTGATTCCGTGATCTTGGATGAAGTGCAGCAAGAAATCCGAACTACCAACAGAAGTAAAGACAAGACGCCAGTTTCATGTAGTTCCCATAATGATGAAGACTTGAGCAATGATGTGTCTTTAGTATGCAAACTGGAAGAAGAAATTAAGAGTCCGAAAGGAGGAAATGAGGAACCCAGTTTAAGTGGAAGACAAATGAAGGAGCCTTCTCCTGCTTCAGTAGAAGGTACTTCTGGAGTTCCAAGAGAGCTGTGTGCTGCAGCAGATTTTTGCTCTGTTCCGGTTTCACATAGTGAAGAATTTCTAACTGCAGATAGAAGCGAGGAGGAACATGTCTTGACTTCAGTGACTCAAATGGAAGTAACTCAACCTTGTATCTCAATGGAAGAATTTTCTGAAGTGCCAAAGGGAGGCTCTTCTGTGGAAGGCACAGACGATGGTGTGAATTCAGACGCTGTATTTCAGCAAGAAGTCCAGACTACAAATGGAGCTATAGAAGCACCCATACTTAGTCTCATCATAGAAACAGAACTGCAGCCCACACATGGTTTGGTTGAAGAATTTGAGGTTCCCGGAGTGACCTGTGCAACAGATAACATCATTGGTTCTATGGCTTTGGATGGTGAAGAGTGGAAAAACCGTCCCACAAATGGTAATGAGGAACTCATCTCTAGTCAAGATACTTCAAAATGCCAGCCATCTCCTTTTATCCAAACATATTCTAGAGCTAAAAGAAAGGCTAGTGCTGCTCAAGACTTGCGCAATGGTGGTAAAGTTTGCTTATCCCAACATGATAAGGAGATGGAAAACATTGGGTCTTCAAGTGCGGTGGCACCAAGGCTCGAAAGCCCTGCACCAAGTCCTGAAATGAGAAGAAAAAGAAAGAGAGGATTGGAGCAAATAATAGATGACAACCTCGATTCCAATGGATTTATTAGGGGCCCGTGTGAAGGGTTGAGACCAAGGGCTGGGAATGATGCAACGAGTAGGAGTGGGATGGACAACATTTACGAAGAGGTGGAGGAGAAGCCGGTGACGAAGAAGGTGAAGAAACCTTCAGATGTCCATGTTCCTCCCAAGAAAGAACAAGCAAGGAAGTCTCACAGGTGCGACATAGAAAGCTGCCGTATGAGGTTTGCAACAAGGGCGGAGCTAATGTTGCACAAGCGTAACCGTTGCCCACATGAAGGGTGTGGCAAGAGGTTCAGTTCCCACAAGTACGCAGTGAGTCACAGCCGTGTGCATGATGATGATAGGCCCCTCAAGTGCCCGTGGAAGGGCTGCTCCATGTCGTTCAAGTGGGCATGGGCCCGCACTGAGCACATACGCGTGCACACCGGAGAACGGCCTTACCAGTGCAAGGTTGAGGGATGTGGCCTCTTCTTCCGGTTTGTATCGGATTATAGCCGTCACCGACGGAAAACCGGGCATTATGTGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003700 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008214 GO:0009653 GO:0009719 GO:0009725 GO:0009741 GO:0009826 GO:0009889 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0014070 GO:0016043 GO:0016049 GO:0016569 GO:0016570 GO:0016577 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0032451 GO:0032452 GO:0032502 GO:0032989 GO:0033169 GO:0033993 GO:0036211 GO:0040007 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045814 GO:0048519 GO:0048577 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048587 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0051276 GO:0060255 GO:0060560 GO:0065007 GO:0070076 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0140096 GO:0140110 GO:1901564 GO:1901700 GO:1903506 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

JmjC JmjN zf-C2H2

Protein Analysis

1017

Amino Acids

111.48

Weight (kDa)

5.31

Isoelectric Point (pI)

59.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005507)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04240
fragaria_vesca	FvH4_7g19090 FvH4_7g19090 FvH4_7g19090 FvH4_7g19090 FvH4_7g19090 FvH4_7g19090 FvH4_7g19090 FvH4_7g19090 FvH4_7g19090
malus_domestica	MD01G1106000.v1.1 MD07G1172400.v1.1
prunus_persica	Prupe.2G211400_v2.0.a1 Prupe.2G211400_v2.0.a1
pyrus_communis	pycom01g13280 pycom07g16690
rosa_chinensis	RchiOBHm_Chr1g0362971
rosa_laevigata	RLG00000027605
rosa_multiflora	Rmu_sc0000174.1_g000009
rosa_roxburghii	Rroxscaffold_4G00293590
rosa_rugosa	Rorug01G0302900 Rorug01G0303000 Rorug01G0303100 Rorug01G0303200
rosa_samantha	Rh1AG312100 Rh1BG275600 Rh1CG292500 Rh1DG306300
rosa_wichuraiana	Rw1G027660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	68
Acc16I	TGCGCA	1 cut(s)	2369
AccB1I	GGYRCC	3 cut(s)	872, 969, 2440
AccB7I	CCANNNNNTGG	2 cut(s)	1465, 2576
AccI	GTMKAC	1 cut(s)	72
AccII	CGCG	1 cut(s)	2937
AciI	CCGC	7 cut(s)	935, 1032, 1086, 1185, 2435, 2756, 2920
AclI	AACGTT	2 cut(s)	294, 831
AcuI	CTGAAG	6 cut(s)	1143, 1257, 1809, 1935, 2025, 2649
AcyI	GRCGYC	1 cut(s)	1676
AdeI	CACNNNGTG	2 cut(s)	824, 1901
AfaI	GTAC	6 cut(s)	656, 817, 979, 1148, 1837, 2828
AflIII	ACRYGT	2 cut(s)	1939, 2935
AjnI	CCWGG	3 cut(s)	196, 973, 1578
AleI	CACNNNNGTG	1 cut(s)	2844
Alw21I	GWGCWC	2 cut(s)	2931, 2943
Alw26I	GTCTC	6 cut(s)	225, 370, 1505, 2126, 2560, 2712
Alw44I	GTGCAC	1 cut(s)	2939
AlwNI	CAGNNNCTG	2 cut(s)	1133, 2063
AoxI	GGCC	5 cut(s)	2548, 2864, 2916, 2954, 2983
ApaI	GGGCCC	2 cut(s)	2552, 2920
ApaLI	GTGCAC	1 cut(s)	2939
AseI	ATTAAT	1 cut(s)	1193
Asp700I	GAANNNNTTC	3 cut(s)	676, 1374, 1908
AspLEI	GCGC	1 cut(s)	2370
AspS9I	GGNCC	9 cut(s)	274, 314, 418, 627, 2548, 2549, 2865, 2916, 2917
AsuC2I	CCSGG	2 cut(s)	2181, 3034
AsuHPI	GGTGA	5 cut(s)	1579, 2243, 2653, 2665, 3011
AsuII	TTCGAA	1 cut(s)	308
AvaII	GGWCC	4 cut(s)	274, 314, 418, 627
BaeGI	GKGCMC	5 cut(s)	972, 2552, 2879, 2920, 2943
BaeI	ACNNNNGTAYC	2 cut(s)	969, 1002
BanI	GGYRCC	3 cut(s)	872, 969, 2440
BanII	GRGCYC	2 cut(s)	2552, 2920
BarI	GAAGNNNNNNTAC	2 cut(s)	2097, 2129
BbsI	GAAGAC	4 cut(s)	627, 1713, 1804, 2418
Bbv12I	GWGCWC	2 cut(s)	2931, 2943
BccI	CCATC	8 cut(s)	148, 863, 1480, 2039, 2222, 2314, 2404, 2599
BceAI	ACGGC	5 cut(s)	743, 2718, 2829, 2969, 3000
BcgI	CGANNNNNNTGC	2 cut(s)	2441, 2475
BciT130I	CCWGG	3 cut(s)	198, 975, 1580
BciVI	GTATCC	1 cut(s)	1113
BclI	TGATCA	1 cut(s)	397
BcnI	CCSGG	2 cut(s)	2181, 3034
BcoDI	GTCTC	6 cut(s)	225, 370, 1505, 2126, 2560, 2712
BfaI	CTAG	5 cut(s)	755, 1439, 2280, 2331, 2349
BfmI	CTRYAG	6 cut(s)	495, 945, 1866, 1917, 2100, 2141
BfuI	GTATCC	1 cut(s)	1113
BglII	AGATCT	2 cut(s)	568, 779
Bme1390I	CCNGG	5 cut(s)	198, 975, 1580, 2181, 3034
Bme18I	GGWCC	4 cut(s)	274, 314, 418, 627
BmgT120I	GGNCC	9 cut(s)	274, 314, 418, 627, 2548, 2549, 2865, 2916, 2917
BmrFI	CCNGG	5 cut(s)	198, 975, 1580, 2181, 3034
BmrI	ACTGGG	1 cut(s)	1779
BmsI	GCATC	3 cut(s)	161, 1283, 2575
BmuI	ACTGGG	1 cut(s)	1779
BoxI	GACNNNNGTC	1 cut(s)	919
BpiI	GAAGAC	4 cut(s)	627, 1713, 1804, 2418
BpmI	CTGGAG	2 cut(s)	1601, 1863
Bpu14I	TTCGAA	1 cut(s)	308
BpuEI	CTTGAG	4 cut(s)	171, 1732, 2343, 2855
BpuMI	CCSGG	2 cut(s)	2181, 3034
BsaBI	GATNNNNATC	1 cut(s)	784
BsaHI	GRCGYC	1 cut(s)	1676
BsaI	GGTCTC	2 cut(s)	370, 2560
BsaJI	CCNNGG	7 cut(s)	196, 197, 380, 973, 2444, 2570, 2879
BsaWI	WCCGGW	3 cut(s)	1888, 2945, 2994
BsaXI	ACNNNNNCTCC	4 cut(s)	1439, 1469, 2750, 2780
Bse118I	RCCGGY	1 cut(s)	2638
Bse1I	ACTGG	6 cut(s)	629, 1422, 1679, 1746, 1785, 2962
Bse3DI	GCAATG	4 cut(s)	1356, 1606, 1723, 2377
Bse8I	GATNNNNATC	1 cut(s)	784
BseBI	CCWGG	3 cut(s)	198, 975, 1580
BseDI	CCNNGG	7 cut(s)	196, 197, 380, 973, 2444, 2570, 2879
BseGI	GGATG	8 cut(s)	680, 802, 850, 1495, 1633, 2233, 2610, 2984
BseJI	GATNNNNATC	1 cut(s)	784
BseMI	GCAATG	4 cut(s)	1356, 1606, 1723, 2377
BseMII	CTCAG	7 cut(s)	90, 135, 365, 759, 1500, 1545, 2916
BseNI	ACTGG	6 cut(s)	629, 1422, 1679, 1746, 1785, 2962
BseRI	GAGGAG	4 cut(s)	524, 1406, 1946, 2645
BseSI	GKGCMC	5 cut(s)	972, 2552, 2879, 2920, 2943
BseYI	CCCAGC	2 cut(s)	740, 2576
BsgI	GTGCAG	2 cut(s)	1655, 2445
Bsh1236I	CGCG	1 cut(s)	2937
BshFI	GGCC	5 cut(s)	2550, 2866, 2918, 2956, 2985
BshNI	GGYRCC	3 cut(s)	872, 969, 2440
BsiHKAI	GWGCWC	2 cut(s)	2931, 2943
BsiSI	CCGG	6 cut(s)	1889, 2181, 2639, 2946, 2995, 3033
BslFI	GGGAC	4 cut(s)	300, 723, 1441, 2235
BsmAI	GTCTC	6 cut(s)	225, 370, 1505, 2126, 2560, 2712
BsmFI	GGGAC	4 cut(s)	300, 723, 1441, 2235
BsmI	GAATGC	1 cut(s)	1483
BsnI	GGCC	5 cut(s)	2550, 2866, 2918, 2956, 2985
Bso31I	GGTCTC	2 cut(s)	370, 2560
Bsp119I	TTCGAA	1 cut(s)	308
Bsp120I	GGGCCC	2 cut(s)	2548, 2916
Bsp1286I	GDGCHC	6 cut(s)	972, 2552, 2879, 2920, 2931, 2943
Bsp1407I	TGTACA	1 cut(s)	815
Bsp143I	GATC	5 cut(s)	397, 568, 779, 785, 1620
BspACI	CCGC	7 cut(s)	935, 1032, 1086, 1185, 2435, 2756, 2920
BspANI	GGCC	5 cut(s)	2550, 2866, 2918, 2956, 2985
BspCNI	CTCAG	7 cut(s)	89, 136, 366, 758, 1501, 1546, 2917
BspFNI	CGCG	1 cut(s)	2937
BspHI	TCATGA	1 cut(s)	1471
BspMAI	CTGCAG	4 cut(s)	499, 1870, 1921, 2145
BspQI	GCTCTTC	1 cut(s)	2029
BspT104I	TTCGAA	1 cut(s)	308
BspT107I	GGYRCC	3 cut(s)	872, 969, 2440
BspTNI	GGTCTC	2 cut(s)	370, 2560
BsrDI	GCAATG	4 cut(s)	1356, 1606, 1723, 2377
BsrFI	RCCGGY	1 cut(s)	2638
BsrGI	TGTACA	1 cut(s)	815
BsrI	ACTGG	6 cut(s)	629, 1422, 1679, 1746, 1785, 2962
BssAI	RCCGGY	1 cut(s)	2638
BssECI	CCNNGG	7 cut(s)	196, 197, 380, 973, 2444, 2570, 2879
BssMI	GATC	5 cut(s)	397, 568, 779, 785, 1620
BssNI	GRCGYC	1 cut(s)	1676
BssT1I	CCWWGG	3 cut(s)	380, 2444, 2570
Bst2UI	CCWGG	3 cut(s)	198, 975, 1580
Bst4CI	ACNGT	8 cut(s)	654, 659, 1232, 1262, 1567, 1576, 2249, 2783
Bst6I	CTCTTC	5 cut(s)	264, 2029, 2229, 2616, 2993
BstACI	GRCGYC	1 cut(s)	1676
BstAPI	GCANNNNNTGC	1 cut(s)	503
BstAUI	TGTACA	1 cut(s)	815
BstBI	TTCGAA	1 cut(s)	308
BstC8I	GCNNGC	6 cut(s)	91, 588, 702, 2303, 2920, 2939
BstDEI	CTNAG	9 cut(s)	76, 144, 374, 745, 924, 1509, 1554, 2117, 2925
BstDSI	CCRYGG	1 cut(s)	2879
BstENI	CCTNNNNNAGG	1 cut(s)	978
BstF5I	GGATG	8 cut(s)	680, 802, 850, 1495, 1633, 2233, 2610, 2984
BstFNI	CGCG	1 cut(s)	2937
BstHHI	GCGC	1 cut(s)	2370
BstKTI	GATC	5 cut(s)	400, 571, 782, 788, 1623
BstMAI	GTCTC	6 cut(s)	225, 370, 1505, 2126, 2560, 2712
BstMBI	GATC	5 cut(s)	397, 568, 779, 785, 1620
BstMWI	GCNNNNNNNGC	8 cut(s)	95, 494, 503, 697, 2105, 2354, 2753, 2767
BstNI	CCWGG	3 cut(s)	198, 975, 1580
BstNSI	RCATGY	4 cut(s)	93, 451, 704, 1943
BstPAI	GACNNNNGTC	1 cut(s)	919
BstSCI	CCNGG	5 cut(s)	196, 973, 1578, 2179, 3032
BstSFI	CTRYAG	6 cut(s)	495, 945, 1866, 1917, 2100, 2141
BstSLI	GKGCMC	5 cut(s)	972, 2552, 2879, 2920, 2943
BstUI	CGCG	1 cut(s)	2937
BstV2I	GAAGAC	4 cut(s)	627, 1713, 1804, 2418
BstX2I	RGATCY	2 cut(s)	568, 779
BstYI	RGATCY	2 cut(s)	568, 779
BsuI	GTATCC	1 cut(s)	1113
BsuRI	GGCC	5 cut(s)	2550, 2866, 2918, 2956, 2985
BtgI	CCRYGG	1 cut(s)	2879
BtsCI	GGATG	8 cut(s)	680, 802, 850, 1495, 1633, 2233, 2610, 2984
BtsI	GCAGTG	3 cut(s)	434, 1060, 2838
BtsIMutI	CAGTG	8 cut(s)	434, 1060, 1131, 1429, 1959, 2838, 2922, 2969
Cac8I	GCNNGC	6 cut(s)	91, 588, 702, 2303, 2920, 2939
CaiI	CAGNNNCTG	2 cut(s)	1133, 2063
CciI	TCATGA	1 cut(s)	1471
CfoI	GCGC	1 cut(s)	2370
Cfr10I	RCCGGY	1 cut(s)	2638
Cfr13I	GGNCC	9 cut(s)	274, 314, 418, 627, 2548, 2549, 2865, 2916, 2917
CseI	GACGC	4 cut(s)	546, 1068, 1684, 2069
Csp6I	GTAC	6 cut(s)	655, 816, 978, 1147, 1836, 2827
CspCI	CAANNNNNGTGG	2 cut(s)	2418, 2453
CviQI	GTAC	6 cut(s)	655, 816, 978, 1147, 1836, 2827
DdeI	CTNAG	9 cut(s)	76, 144, 374, 745, 924, 1509, 1554, 2117, 2925
DpnI	GATC	5 cut(s)	399, 570, 781, 787, 1622
DpnII	GATC	5 cut(s)	397, 568, 779, 785, 1620
DraIII	CACNNNGTG	2 cut(s)	824, 1901
DrdI	GACNNNNNNGTC	1 cut(s)	68
DseDI	GACNNNNNNGTC	1 cut(s)	68
Eam1104I	CTCTTC	5 cut(s)	264, 2029, 2229, 2616, 2993
EarI	CTCTTC	5 cut(s)	264, 2029, 2229, 2616, 2993
EciI	GGCGGA	1 cut(s)	2771
Eco130I	CCWWGG	3 cut(s)	380, 2444, 2570
Eco24I	GRGCYC	2 cut(s)	2552, 2920
Eco31I	GGTCTC	2 cut(s)	370, 2560
Eco32I	GATATC	1 cut(s)	1138
Eco47I	GGWCC	4 cut(s)	274, 314, 418, 627
Eco57I	CTGAAG	6 cut(s)	1143, 1257, 1809, 1935, 2025, 2649
EcoNI	CCTNNNNNAGG	1 cut(s)	978
EcoO109I	RGGNCCY	3 cut(s)	274, 2548, 2865
EcoRI	GAATTC	3 cut(s)	676, 1042, 2053
EcoRII	CCWGG	3 cut(s)	196, 973, 1578
EcoRV	GATATC	1 cut(s)	1138
EcoT14I	CCWWGG	3 cut(s)	380, 2444, 2570
EcoT22I	ATGCAT	1 cut(s)	706
EcoT38I	GRGCYC	2 cut(s)	2552, 2920
ErhI	CCWWGG	3 cut(s)	380, 2444, 2570
FaqI	GGGAC	4 cut(s)	300, 723, 1441, 2235
FauI	CCCGC	2 cut(s)	928, 2927
FbaI	TGATCA	1 cut(s)	397
FblI	GTMKAC	1 cut(s)	72
FokI	GGATG	8 cut(s)	667, 789, 857, 1502, 1640, 2240, 2617, 2991
FriOI	GRGCYC	2 cut(s)	2552, 2920
FspBI	CTAG	5 cut(s)	755, 1439, 2280, 2331, 2349
FspI	TGCGCA	1 cut(s)	2369
GlaI	GCGC	1 cut(s)	2369
GsaI	CCCAGC	2 cut(s)	744, 2580
GsuI	CTGGAG	2 cut(s)	1601, 1863
HaeIII	GGCC	5 cut(s)	2550, 2866, 2918, 2956, 2985
HapII	CCGG	6 cut(s)	1889, 2181, 2639, 2946, 2995, 3033
HgaI	GACGC	4 cut(s)	546, 1068, 1684, 2069
HhaI	GCGC	1 cut(s)	2370
Hin1I	GRCGYC	1 cut(s)	1676
Hin6I	GCGC	1 cut(s)	2368
HinP1I	GCGC	1 cut(s)	2368
HincII	GTYRAC	1 cut(s)	73
HindII	GTYRAC	1 cut(s)	73
HindIII	AAGCTT	1 cut(s)	794
HinfI	GANTC	9 cut(s)	74, 1225, 1312, 1535, 1613, 1759, 1957, 2528, 2836
HpaII	CCGG	6 cut(s)	1889, 2181, 2639, 2946, 2995, 3033
HphI	GGTGA	5 cut(s)	1579, 2243, 2653, 2665, 3011
Hpy166II	GTNNAC	4 cut(s)	73, 418, 818, 2941
Hpy8I	GTNNAC	4 cut(s)	73, 418, 818, 2941
Hpy99I	CGWCG	1 cut(s)	3027
HpyCH4III	ACNGT	8 cut(s)	654, 659, 1232, 1262, 1567, 1576, 2249, 2783
HpyCH4IV	ACGT	4 cut(s)	294, 604, 831, 1494
HpyF10VI	GCNNNNNNNGC	8 cut(s)	95, 494, 503, 697, 2105, 2354, 2753, 2767
HpyF3I	CTNAG	9 cut(s)	76, 144, 374, 745, 924, 1509, 1554, 2117, 2925
HpySE526I	ACGT	4 cut(s)	294, 604, 831, 1494
Hsp92I	GRCGYC	1 cut(s)	1676
HspAI	GCGC	1 cut(s)	2368
Ksp22I	TGATCA	1 cut(s)	397
Kzo9I	GATC	5 cut(s)	397, 568, 779, 785, 1620
LguI	GCTCTTC	1 cut(s)	2029
LmnI	GCTCC	9 cut(s)	160, 440, 493, 1393, 1810, 2096, 2503, 2758, 2897
LweI	GCATC	3 cut(s)	161, 1283, 2575
MaeI	CTAG	5 cut(s)	755, 1439, 2280, 2331, 2349
MaeII	ACGT	4 cut(s)	294, 604, 831, 1494
MalI	GATC	5 cut(s)	399, 570, 781, 787, 1622
MboI	GATC	5 cut(s)	397, 568, 779, 785, 1620
MfeI	CAATTG	3 cut(s)	501, 1429, 1539
MflI	RGATCY	2 cut(s)	568, 779
MhlI	GDGCHC	6 cut(s)	972, 2552, 2879, 2920, 2931, 2943
MluI	ACGCGT	1 cut(s)	2935
MlyI	GAGTC	5 cut(s)	68, 1529, 1768, 1951, 2845
MmeI	TCCRAC	3 cut(s)	332, 1403, 1557
Mph1103I	ATGCAT	1 cut(s)	706
MroXI	GAANNNNTTC	3 cut(s)	676, 1374, 1908
MseI	TTAA	7 cut(s)	320, 528, 798, 882, 1193, 1755, 1790
MslI	CAYNNNNRTG	6 cut(s)	88, 1476, 1701, 2844, 2856, 2936
MspA1I	CMGCKG	1 cut(s)	1364
MspI	CCGG	6 cut(s)	1889, 2181, 2639, 2946, 2995, 3033
MspR9I	CCNGG	5 cut(s)	198, 975, 1580, 2181, 3034
MunI	CAATTG	3 cut(s)	501, 1429, 1539
Mva1269I	GAATGC	1 cut(s)	1483
MvaI	CCWGG	3 cut(s)	198, 975, 1580
MvnI	CGCG	1 cut(s)	2937
MwoI	GCNNNNNNNGC	8 cut(s)	95, 494, 503, 697, 2105, 2354, 2753, 2767
NciI	CCSGG	2 cut(s)	2181, 3034
NdeII	GATC	5 cut(s)	397, 568, 779, 785, 1620
NmuCI	GTSAC	8 cut(s)	239, 760, 1424, 1954, 2185, 2641, 2837, 3017
NsbI	TGCGCA	1 cut(s)	2369
NsiI	ATGCAT	1 cut(s)	706
NspI	RCATGY	4 cut(s)	93, 451, 704, 1943
NspV	TTCGAA	1 cut(s)	308
OliI	CACNNNNGTG	1 cut(s)	2844
PaeI	GCATGC	2 cut(s)	93, 704
PagI	TCATGA	1 cut(s)	1471
PasI	CCCWGGG	1 cut(s)	197
PciI	ACATGT	1 cut(s)	1939
PciSI	GCTCTTC	1 cut(s)	2029
PcsI	WCGNNNNNNNCGW	1 cut(s)	305
PctI	GAATGC	1 cut(s)	1483
PdmI	GAANNNNTTC	3 cut(s)	676, 1374, 1908
PfeI	GAWTC	4 cut(s)	1225, 1312, 1613, 2528
PflMI	CCANNNNNTGG	2 cut(s)	1465, 2576
PfoI	TCCNGGA	2 cut(s)	1578, 2179
PleI	GAGTC	5 cut(s)	68, 1529, 1767, 1951, 2844
PpsI	GAGTC	5 cut(s)	68, 1529, 1767, 1951, 2844
PpuMI	RGGWCCY	1 cut(s)	274
PscI	ACATGT	1 cut(s)	1939
PshAI	GACNNNNGTC	1 cut(s)	919
PshBI	ATTAAT	1 cut(s)	1193
Psp1406I	AACGTT	2 cut(s)	294, 831
Psp5II	RGGWCCY	1 cut(s)	274
Psp6I	CCWGG	3 cut(s)	196, 973, 1578
PspFI	CCCAGC	2 cut(s)	740, 2576
PspGI	CCWGG	3 cut(s)	196, 973, 1578
PspOMI	GGGCCC	2 cut(s)	2548, 2916
PspPI	GGNCC	9 cut(s)	274, 314, 418, 627, 2548, 2549, 2865, 2916, 2917
PspPPI	RGGWCCY	1 cut(s)	274
PstI	CTGCAG	4 cut(s)	499, 1870, 1921, 2145
PstNI	CAGNNNCTG	2 cut(s)	1133, 2063
PsuI	RGATCY	2 cut(s)	568, 779
PvuII	CAGCTG	1 cut(s)	1364
RsaI	GTAC	6 cut(s)	656, 817, 979, 1148, 1837, 2828
RsaNI	GTAC	6 cut(s)	655, 816, 978, 1147, 1836, 2827
RseI	CAYNNNNRTG	6 cut(s)	88, 1476, 1701, 2844, 2856, 2936
SalI	GTCGAC	1 cut(s)	71
SapI	GCTCTTC	1 cut(s)	2029
SaqAI	TTAA	7 cut(s)	320, 528, 798, 882, 1193, 1755, 1790
Sau3AI	GATC	5 cut(s)	397, 568, 779, 785, 1620
Sau96I	GGNCC	9 cut(s)	274, 314, 418, 627, 2548, 2549, 2865, 2916, 2917
SchI	GAGTC	5 cut(s)	68, 1529, 1768, 1951, 2845
ScrFI	CCNGG	5 cut(s)	198, 975, 1580, 2181, 3034
SduI	GDGCHC	6 cut(s)	972, 2552, 2879, 2920, 2931, 2943
SfaNI	GCATC	3 cut(s)	161, 1283, 2575
SfcI	CTRYAG	6 cut(s)	495, 945, 1866, 1917, 2100, 2141
SfuI	TTCGAA	1 cut(s)	308
SinI	GGWCC	4 cut(s)	274, 314, 418, 627
SmiMI	CAYNNNNRTG	6 cut(s)	88, 1476, 1701, 2844, 2856, 2936
SmlI	CTYRAG	4 cut(s)	186, 1711, 2358, 2870
SmoI	CTYRAG	4 cut(s)	186, 1711, 2358, 2870
SphI	GCATGC	2 cut(s)	93, 704
SsiI	CCGC	7 cut(s)	935, 1032, 1086, 1185, 2435, 2756, 2920
SspI	AATATT	1 cut(s)	908
SspMI	CTAG	5 cut(s)	755, 1439, 2280, 2331, 2349
StyD4I	CCNGG	5 cut(s)	196, 973, 1578, 2179, 3032
StyI	CCWWGG	3 cut(s)	380, 2444, 2570
TaaI	ACNGT	8 cut(s)	654, 659, 1232, 1262, 1567, 1576, 2249, 2783
TaiI	ACGT	4 cut(s)	297, 607, 834, 1497
TaqI	TCGA	7 cut(s)	72, 308, 686, 784, 1221, 2451, 2526
TatI	WGTACW	2 cut(s)	815, 1146
TauI	GCSGC	2 cut(s)	1035, 1187
TfiI	GAWTC	4 cut(s)	1225, 1312, 1613, 2528
Tru1I	TTAA	7 cut(s)	320, 528, 798, 882, 1193, 1755, 1790
Tru9I	TTAA	7 cut(s)	320, 528, 798, 882, 1193, 1755, 1790
TscAI	CASTG	8 cut(s)	434, 1060, 1138, 1429, 1959, 2838, 2929, 2969
TseFI	GTSAC	8 cut(s)	239, 760, 1424, 1954, 2185, 2641, 2837, 3017
Tsp45I	GTSAC	8 cut(s)	239, 760, 1424, 1954, 2185, 2641, 2837, 3017
TspGWI	ACGGA	2 cut(s)	1606, 3040
TspRI	CASTG	8 cut(s)	434, 1060, 1138, 1429, 1959, 2838, 2929, 2969
Van91I	CCANNNNNTGG	2 cut(s)	1465, 2576
VneI	GTGCAC	1 cut(s)	2939
VpaK11BI	GGWCC	4 cut(s)	274, 314, 418, 627
VspI	ATTAAT	1 cut(s)	1193
XagI	CCTNNNNNAGG	1 cut(s)	978
XbaI	TCTAGA	1 cut(s)	2330
XceI	RCATGY	4 cut(s)	93, 451, 704, 1943
XcmI	CCANNNNNNNNNTGG	2 cut(s)	2090, 2155
XmiI	GTMKAC	1 cut(s)	72
XmnI	GAANNNNTTC	3 cut(s)	676, 1374, 1908
XspI	CTAG	5 cut(s)	755, 1439, 2280, 2331, 2349
Zsp2I	ATGCAT	1 cut(s)	706

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.