Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0005507

Physical Location & Seq

Genomic Coordinates Reverse (-)

56515694 .. 56523298

Gene Structure 7605 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG292500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4836 bp

ATGGGTGATGTTAAGATACCAAATTGGCTTAAAGGGTTGCCATTGGCGCCCGAGTTTCATCCAACCCATACTGAATTTGCTGACCCAATTGCTTATATATCGAAAATTGAGAAGGAAGCCAGTGAATTTGGTATTTGCAAGATTATCCCACCATTGCCGAAACCTTCCAAGAGATATGTTTTTAGTAACTTGAATAAGTCACTTGCTAAGCGGCCCGAATTAGGTTCTGATTTGATCCCTGGGAATGATGGTGATGCTGTGAAAGTGGGTTCTGGGGATGGTAGTAATGATGGGGAGGTTAGGGCAGTGTTTACCACTAGGCACCAAGAATTGGGGCAGACTGTGAAAAGAGCGAAAGGGGCGGGTGTTCAGGATCCGCCGCCATCGGGTGTTGATAAGCAAGTGTGGCAAAGTGGGGAAGTTTATACTTTAGAGCAGTTTGAGTCCAAGTCCAGAGCTTTTGCAAGGAGCATTTTAGGTACAATTAGAGATGTATCTCCATTGGTTATAGAGGCAATGTTTTGGAAGGCAGCTTCTGAGAAGCCGATATATATTGAGTATGCCAATGATGTGCCTGGGTCTGCTTTTGAAGAACCGGAGGGTCTGTTGTGCTATTCACGTAGGCGGAGGAGGAAGAGGAATTCCTACCACAGAAGTGGACCAAACTCTGACAGCAAGAAAAGTGAAATGATTAGCAGTTGTGAAAGAAAGTCCCAAAATGGTGAAGTTGAGGATGCTTCCCCTAAAAATGTTTCACTTACATCCGTGGAGGTACCCAAATCATCTGCTTTGCCGGGAATAGTGTCAACAGATGAAACTTCTCAATCTTCTAGGAAAAAAAGTCAAAATTCTTCTTGTGACGTGGAAGGTACTGCTGGTTGGAAGCTTTCAAACAGTCCATGGAACTTACAAGTCATTGCACGCTCACCTGGTTCACTTACTCGTTTCATGCCGGATGATATCCCAGGTGTTACTTCTCCTATGGTTTACATCGGCATGTTGTTCAGCTGGTTTGCTTGGCACGTTGAAGATCATGAGCTTCACAGCATGAATTTTCTGCACAATGGATCTGCAAAGACTTGGTATTCTGTTCCTGGAGATTATGCATTTGCTTTTGAGGAACTTATTCGCACTGAGGCATATGGTGGTACTGCTGACCGTCTGGCTGCTCTCTCACTATTGGGTAATAAAACAACTTTAATGTCACCTGAGGTAGTTATCGCATCGGGAATTCCGTGTTGCAGGTTAATACAGAATCCTGGTGAATTTGTTGTGACTTTTCCAAGGGCTTACCATGTAGGATTCAGTCACGGTTTCAATTGTGGAGAAGCTGCTAACTTTGGAACACCACAATGGCTTAAAGTGGCTAAAGAAGCTGCAGTACGTAGAGCTGCTATGAATTATCTTCCTATGCTCTCCCATCAACAGCTGCTATACCTCTCGACTATGTCTTTTGTTTCAAGAGTGCCGAAGTCCCTACTACCAGGTGTGCGGAGTTCCCGTATGAGAGATAGACAAAAGGAAGACAGAGAGCTATCAGTAAAGAAGGCTTTTATTGAAGATATTTTAAATGAGAACGATGTGTTATCTGCTCTTCTTGGGAAAGAATCAAGTTGCCGTGCAGTATTATGGAATCCTGATTTACTTCCAAATGCAAGTAAAGAGTCTTCCATACCCACTGCAAGTGCTCCTGTTGATACGAATTCAAAAGAAAATGCTACGGATACTCAGGGTGGAAATAGTACTAATGATCAGAACTTTCTGGTAGATGAGATGAGTTTGTACATGGAAAATCTTAACGACTTATATTTGGGCAGTGATGATTTGTCTGATGACTTCCAAGTTGACTCAGGAACATTGGCATGTGTGGCATGTGGGATACTTGGGTTTCCATTTATGTCTGTGGTGCAACCATCTGAGAAGGCATCAATGGAACTTCAGCCTGAATGTATTTTGGCTGAAGAATTGCCTGGAGTTTCAGGCAATTCTCATATCTCTCCAGAGCATAGCGAATCTTTCAAAGGCTGTGCTACAGAGGATCTCTCTCCTATTTCCAATGCTTTTCCACATGCAAGGGATCCCGTCTTACCTTGCACAACAAGGTTTAACAACTGTTGGAATACTGTTGATAAATTTCTGAGACCACGGAGTTTCTGTCTTGAACATGCTGTTGAAACTTTGGAGCTGTTGCAGTGTAAAGGTGGAGCAAACATGCTTGTGATTTGCCATTCTGACTATCAGAAAATAAAGGCTCCTGCTGCAGCCATTGCAGAAGAAATTGGTTGCCCTTTTAACTATAACGAGGTTCCATTGGACATTGCCTCAAATGAAGATTTGAACTTGATAGATCTTGCTGTCGATGATGGATGTGATGAATGTGGAGAAGATTGGACCTCAAAGTTGGGTATCAACCTACGGTACTGTGTCAAGGTCAGAAAAAGTTCTTCCTCGAAGCGAGTCCAGCATGCATTGGCATTGGGTGAAGTGTTCTCGAAACAAAGTTGCAGCTCAGAATTTCTAGCCGTTAACTGGAAATCTAGAAGATCTCGGACGAAGAAGGTTTATCTAGATGCCCCTTACAAACAATGTGACAGCATTGACAAAAAGAAGGAAGAAGTGGTGGAGGCAAAGTCAGCAGATGCCACCTCTTTTAAAAGGGAAGCAAAAATAATTCAATATTCAAGAAGGAATAAGCGAAAACCAAGTACTTCTACAGGAGCAGGTAGGGTTGTTGAGCACCCTGGTACTTCTGAAGAGCTTGATAAACATAACAGGAGGGCATCAGATAATAGCATTTACAACAATGGGAAGTCCACCAGCATATGTGCAAGGTTGGACTCATTTACATCAGATAGTACTGAAATGCATCCTGATGTCCAGATGCTTGAAGCCACCAGGGATATCTGTTTGGACTCTACTCTTTCACAAGCTGCAGATACAGTTGCCTTAACAGCTGGAAGTGCTGACGCACAGATTGAAAATCGCAGTTTGGAAGAGAGGAACATGAACGGTGGAGGTTGTAATCTAGCAGTAAGCGAGTCTGGTATGCAAGATGAGATCAAGATCCTTAAAGAAGCCAGGCAAAACAACTCAATTATTCCACTTGTCATTGCACGTGATGAAAGGTCTGAAAAGCATAGAGGGGAACAGGAAAATGAAAAATTGAACAAAAATGATGACAATTGTAATCTGGTGTCTGAAGGGCAGTCCCAACTTTGGTCTCAGGAGGATGTTCTTATGAATGTGGTTTCTGTTTTCACCAAATCAACAAACTTATCTGCTGCTGACTCAATTGTGACAAGTTCTGAGGAACAGATAGTCAATGCAGTCATTGAGAAATCTTGCGTGAATAGTGAAGTTTGTGAATCTATGACTTTGGGCGATGAAGTGCAGCAAGAAATCCAAACTACTAACAGAAGTAACGACAAGGCACCGGTTTCATGTAGTTCCACGCTGTTGAATGATCCAACCTTTGCTGCAGCTGAATGTCAGGTTGAATTTGAAAGAGAGACTCATATTGTAGAAGAATTTAGCAATGTTGTTTCTTCAGAATTCAAACCAGAAGAAGATATTGAGATTCCAAAAGGAAGATATGCGAAACCCAGTTTAAGTCCTACCAGACGAGTCGGTCAACACTCTCCTGCTTCTACAGACAGATTGTCTGGAGTTGCAAAGGCGTTCTGTGCTGCAGCAGATTTTCAGCCAGGCCCAACTTCACATGGTGAAGAATTTCAGGCAGCAGATAGAACTAGTGAGGGGGAATACATCTCTACTTCAATGATAGAGGAAGAAACTCATCCCTCGTCATTGGAAGAATCTTCTGAAGTTCCAAGAGGAAGCTCTTTGGAGGAAGGCACGAGCAGTGGTGTGACTTCAGCCACTCTAGTTCAGCAAGATGCCCAAACTACAAATGCAGCTGTGGAAGCACCTAGTCATAATTTTGTTGTACGAGGAGAAAATCAACCTATACCTGTCTCGGTTGAAGATGAAGTTCCCAGAGTGAGCTGTGCAACAGATGTGACCTTGGATGATAAAGAACGGTGGACAAACTCGTACAGTAATAAGGAACTCATTGCTAGTCATGATACTTCAAAATGCGAGCCGTCTCGTGTTACAATTAAAACATACTTTAGAGTTAAAAGAGGGAGCCGTGCTGCTCAAGAATTGCACAACGGTACTGAAGTTTGTATATCACAACATGATAGAGAGCTGGGAAACATTGAGCCTTCCATTTTAGACCCCAGACCAAGTCCTGAAATTGGAAGTAAAAGAAAGAGAGGAGTGGGGCAGAAAATGGATGACAACTCCAACTTCAATGGATATATTAGGGGGCCATGTGAAGGTTTGAGACCAAGGGCTGCGAAGGATGCAACAGGTAGTAGGATAGACATCCACAACCAGGTCGAAGAGCAGCCAGTGGCAAAGAAGGTGAAGAGACCTTCAGATGTTCCTGTTCCTCCCAAGGATAAGAAGAAAGAGCAAGTAAGGAAGCCCCACAGCTGCAACCTAGGGGGCTGTAGCATGAGTTTTCAGACAAAGGAGGAGTTAATGGTGCACAAGCGTAACCGCTGCCCACATGAAGGGTGTGGTAAGAAGTTCAGTTGCCACAAGTATGCAATGGTTCACAGCCGTGTGCATGATAGTGCTAGGCCCTTCAAGTGCCCATGGAAGGGTTGCTCCATGTCATTCAAGTGGGCATGGGCCCAGACTGAGCATATACGAGTGCACACTGGAGAAAAACCATACAAGTGCAAGGTGGACGGCTGTGGCCTCTCTTTCAGGTTTGTATCAGATTTTAGCCGTCACAGACGGAAAACAGGGCATTATGTGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003700 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008214 GO:0009653 GO:0009719 GO:0009725 GO:0009741 GO:0009826 GO:0009889 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0014070 GO:0016043 GO:0016049 GO:0016569 GO:0016570 GO:0016577 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0032451 GO:0032452 GO:0032502 GO:0032989 GO:0033169 GO:0033993 GO:0036211 GO:0040007 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045814 GO:0048519 GO:0048577 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048587 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0051276 GO:0060255 GO:0060560 GO:0065007 GO:0070076 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0140096 GO:0140110 GO:1901564 GO:1901700 GO:1903506 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

JmjC JmjN zf-C2H2

Protein Analysis

1611

Amino Acids

177.83

Weight (kDa)

5.86

Isoelectric Point (pI)

53.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
JmjN	PF02375	17 - 50	5.4e-15	jmjN domain
JmjC	PF02373	329 - 447	5.4e-34	JmjC domain, hydroxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0005507)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04240
fragaria_vesca	FvH4_7g19090 FvH4_7g19090 FvH4_7g19090 FvH4_7g19090 FvH4_7g19090 FvH4_7g19090 FvH4_7g19090 FvH4_7g19090 FvH4_7g19090
malus_domestica	MD01G1106000.v1.1 MD07G1172400.v1.1
prunus_persica	Prupe.2G211400_v2.0.a1 Prupe.2G211400_v2.0.a1
pyrus_communis	pycom01g13280 pycom07g16690
rosa_chinensis	RchiOBHm_Chr1g0362971
rosa_laevigata	RLG00000027605
rosa_multiflora	Rmu_sc0000174.1_g000009
rosa_roxburghii	Rroxscaffold_4G00293590
rosa_rugosa	Rorug01G0302900 Rorug01G0303000 Rorug01G0303100 Rorug01G0303200
rosa_samantha	Rh1AG312100 Rh1BG275600 Rh1CG292500 Rh1DG306300
rosa_wichuraiana	Rw1G027660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	3627
Acc36I	ACCTGC	2 cut(s)	1233, 2711
Acc65I	GGTACC	1 cut(s)	772
AccB1I	GGYRCC	4 cut(s)	46, 321, 772, 3430
AccB7I	CCANNNNNTGG	1 cut(s)	331
AciI	CCGC	7 cut(s)	211, 362, 377, 380, 625, 1492, 4567
AclWI	GGATC	9 cut(s)	229, 368, 381, 1075, 2046, 2072, 2085, 3058, 3458
AcuI	CTGAAG	9 cut(s)	1922, 1980, 2772, 3219, 3531, 3843, 3858, 4200, 4425
AcvI	CACGTG	1 cut(s)	3116
AcyI	GRCGYC	1 cut(s)	47
AdeI	CACNNNGTG	1 cut(s)	3722
AgeI	ACCGGT	1 cut(s)	3433
AhdI	GACNNNNNGTC	1 cut(s)	3658
AhlI	ACTAGT	1 cut(s)	3749
AjiI	CACGTC	1 cut(s)	862
AleI	CACNNNNGTG	2 cut(s)	654, 4629
Alw21I	GWGCWC	4 cut(s)	1690, 2739, 4557, 4728
Alw26I	GTCTC	7 cut(s)	2134, 3225, 3503, 3979, 4110, 4342, 4429
Alw44I	GTGCAC	2 cut(s)	4553, 4724
AlwI	GGATC	9 cut(s)	229, 368, 381, 1075, 2046, 2072, 2085, 3058, 3458
AlwNI	CAGNNNCTG	1 cut(s)	536
Ama87I	CYCGRG	1 cut(s)	50
AoxI	GGCC	6 cut(s)	212, 3706, 4331, 4649, 4701, 4768
ApaI	GGGCCC	1 cut(s)	4705
ApaLI	GTGCAC	2 cut(s)	4553, 4724
AsiGI	ACCGGT	1 cut(s)	3433
Asp700I	GAANNNNTTC	3 cut(s)	1125, 2440, 3729
Asp718I	GGTACC	1 cut(s)	772
AspA2I	CCTAGG	1 cut(s)	4507
AspLEI	GCGC	1 cut(s)	49
AspS9I	GGNCC	8 cut(s)	213, 659, 2391, 3707, 4331, 4650, 4701, 4702
AsuC2I	CCSGG	1 cut(s)	795
AvaI	CYCGRG	1 cut(s)	50
AvaII	GGWCC	2 cut(s)	659, 2391
AvrII	CCTAGG	1 cut(s)	4507
AxyI	CCTNAGG	1 cut(s)	1209
BaeGI	GKGCMC	4 cut(s)	4557, 4664, 4705, 4728
BaeI	ACNNNNGTAYC	4 cut(s)	1871, 1904, 4167, 4200
BamHI	GGATCC	2 cut(s)	373, 2077
BanI	GGYRCC	4 cut(s)	46, 321, 772, 3430
BanII	GRGCYC	1 cut(s)	4705
BarI	GAAGNNNNNNTAC	4 cut(s)	1365, 1397, 1651, 1683
BauI	CACGAG	2 cut(s)	3856, 4107
BbrPI	CACGTG	1 cut(s)	3116
BbsI	GAAGAC	2 cut(s)	1530, 1659
Bbv12I	GWGCWC	4 cut(s)	1690, 2739, 4557, 4728
BccI	CCATC	7 cut(s)	242, 272, 284, 391, 1428, 1921, 2357
BceAI	ACGGC	7 cut(s)	1602, 2507, 4087, 4134, 4614, 4777, 4785
BciVI	GTATCC	2 cut(s)	1717, 1872
BclI	TGATCA	1 cut(s)	1750
BcnI	CCSGG	1 cut(s)	795
BcoDI	GTCTC	7 cut(s)	2134, 3225, 3503, 3979, 4110, 4342, 4429
BcuI	ACTAGT	1 cut(s)	3749
BfmI	CTRYAG	9 cut(s)	1377, 2031, 2259, 2712, 2931, 3477, 3648, 3687, 4516
BfoI	RGCGCY	1 cut(s)	50
BfuAI	ACCTGC	2 cut(s)	1233, 2711
BfuI	GTATCC	2 cut(s)	1717, 1872
BglII	AGATCT	2 cut(s)	2347, 2543
BlnI	CCTAGG	1 cut(s)	4507
BlpI	GCTNAGC	1 cut(s)	207
BmcAI	AGTACT	3 cut(s)	1744, 2707, 2857
Bme18I	GGWCC	2 cut(s)	659, 2391
BmeRI	GACNNNNNGTC	1 cut(s)	3658
BmeT110I	CYCGRG	1 cut(s)	50
BmgBI	CACGTC	1 cut(s)	862
BmgT120I	GGNCC	8 cut(s)	213, 659, 2391, 3707, 4331, 4650, 4701, 4702
BmrI	ACTGGG	1 cut(s)	3597
BmuI	ACTGGG	1 cut(s)	3597
BpiI	GAAGAC	2 cut(s)	1530, 1659
BplI	GAGNNNNNCTC	2 cut(s)	2027, 2059
BpmI	CTGGAG	5 cut(s)	1116, 1983, 1992, 3684, 4752
Bpu1102I	GCTNAGC	1 cut(s)	207
BpuEI	CTTGAG	1 cut(s)	4143
BpuMI	CCSGG	1 cut(s)	795
BsaAI	YACGTR	3 cut(s)	620, 1385, 3116
BsaBI	GATNNNNATC	2 cut(s)	3062, 4388
BsaHI	GRCGYC	1 cut(s)	47
BsaI	GGTCTC	4 cut(s)	2134, 3225, 4342, 4429
BsaWI	WCCGGW	2 cut(s)	595, 3433
BsaXI	ACNNNNNCTCC	8 cut(s)	590, 620, 1486, 1516, 2140, 2170, 2615, 2645
Bse118I	RCCGGY	1 cut(s)	3433
Bse1I	ACTGG	5 cut(s)	120, 2534, 3603, 4415, 4735
Bse21I	CCTNAGG	1 cut(s)	1209
Bse3DI	GCAATG	9 cut(s)	152, 522, 915, 2265, 2316, 3108, 3541, 4071, 4623
Bse8I	GATNNNNATC	2 cut(s)	3062, 4388
BseJI	GATNNNNATC	2 cut(s)	3062, 4388
BseMI	GCAATG	9 cut(s)	152, 522, 915, 2265, 2316, 3108, 3541, 4071, 4623
BseNI	ACTGG	5 cut(s)	120, 2534, 3603, 4415, 4735
BseRI	GAGGAG	4 cut(s)	643, 3966, 4293, 4556
BseSI	GKGCMC	4 cut(s)	4557, 4664, 4705, 4728
BseYI	CCCAGC	1 cut(s)	4210
BsgI	GTGCAG	3 cut(s)	1043, 1641, 3410
BshFI	GGCC	6 cut(s)	214, 3708, 4333, 4651, 4703, 4770
BshNI	GGYRCC	4 cut(s)	46, 321, 772, 3430
BshTI	ACCGGT	1 cut(s)	3433
BsiHKAI	GWGCWC	4 cut(s)	1690, 2739, 4557, 4728
BsiHKCI	CYCGRG	1 cut(s)	50
BsiSI	CCGG	4 cut(s)	596, 794, 953, 3434
BslFI	GGGAC	3 cut(s)	697, 1459, 3193
BsmAI	GTCTC	7 cut(s)	2134, 3225, 3503, 3979, 4110, 4342, 4429
BsmBI	CGTCTC	1 cut(s)	4110
BsmFI	GGGAC	3 cut(s)	697, 1459, 3193
BsnI	GGCC	6 cut(s)	214, 3708, 4333, 4651, 4703, 4770
Bso31I	GGTCTC	4 cut(s)	2134, 3225, 4342, 4429
BsoBI	CYCGRG	1 cut(s)	50
Bsp120I	GGGCCC	1 cut(s)	4701
Bsp1286I	GDGCHC	6 cut(s)	1690, 2739, 4557, 4664, 4705, 4728
Bsp1407I	TGTACA	1 cut(s)	1782
Bsp1720I	GCTNAGC	1 cut(s)	207
Bsp19I	CCATGG	2 cut(s)	899, 4664
BspACI	CCGC	7 cut(s)	211, 362, 377, 380, 625, 1492, 4567
BspANI	GGCC	6 cut(s)	214, 3708, 4333, 4651, 4703, 4770
BspHI	TCATGA	2 cut(s)	1033, 4081
BspMAI	CTGCAG	5 cut(s)	1381, 2263, 2935, 3481, 3691
BspMI	ACCTGC	2 cut(s)	1233, 2711
BspPI	GGATC	9 cut(s)	229, 368, 381, 1075, 2046, 2072, 2085, 3058, 3458
BspQI	GCTCTTC	3 cut(s)	1599, 2748, 4401
BspT107I	GGYRCC	4 cut(s)	46, 321, 772, 3430
BspTNI	GGTCTC	4 cut(s)	2134, 3225, 4342, 4429
BsrDI	GCAATG	9 cut(s)	152, 522, 915, 2265, 2316, 3108, 3541, 4071, 4623
BsrFI	RCCGGY	1 cut(s)	3433
BsrGI	TGTACA	1 cut(s)	1782
BsrI	ACTGG	5 cut(s)	120, 2534, 3603, 4415, 4735
BssAI	RCCGGY	1 cut(s)	3433
BssNI	GRCGYC	1 cut(s)	47
BssSI	CACGAG	2 cut(s)	3856, 4107
BssT1I	CCWWGG	7 cut(s)	899, 1283, 4023, 4352, 4461, 4507, 4664
Bst2BI	CACGAG	2 cut(s)	3856, 4107
Bst6I	CTCTTC	6 cut(s)	629, 1599, 2748, 2988, 4401, 4427
BstACI	GRCGYC	1 cut(s)	47
BstAPI	GCANNNNNTGC	1 cut(s)	2267
BstAUI	TGTACA	1 cut(s)	1782
BstBAI	YACGTR	3 cut(s)	620, 1385, 3116
BstC8I	GCNNGC	3 cut(s)	922, 2466, 4100
BstDSI	CCRYGG	4 cut(s)	765, 899, 2144, 4664
BstH2I	RGCGCY	1 cut(s)	50
BstHHI	GCGC	1 cut(s)	49
BstMAI	GTCTC	7 cut(s)	2134, 3225, 3503, 3979, 4110, 4342, 4429
BstNSI	RCATGY	7 cut(s)	1000, 1866, 1875, 2072, 2168, 2215, 2468
BstSFI	CTRYAG	9 cut(s)	1377, 2031, 2259, 2712, 2931, 3477, 3648, 3687, 4516
BstSLI	GKGCMC	4 cut(s)	4557, 4664, 4705, 4728
BstSNI	TACGTA	1 cut(s)	1385
BstV2I	GAAGAC	2 cut(s)	1530, 1659
BstX2I	RGATCY	7 cut(s)	373, 1067, 2038, 2077, 2347, 2543, 3063
BstXI	CCANNNNNNTGG	1 cut(s)	656
BstYI	RGATCY	7 cut(s)	373, 1067, 2038, 2077, 2347, 2543, 3063
Bsu36I	CCTNAGG	1 cut(s)	1209
BsuI	GTATCC	2 cut(s)	1717, 1872
BsuRI	GGCC	6 cut(s)	214, 3708, 4333, 4651, 4703, 4770
BtgI	CCRYGG	4 cut(s)	765, 899, 2144, 4664
BtgZI	GCGATG	1 cut(s)	3396
BtrI	CACGTC	1 cut(s)	862
BtsI	GCAGTG	5 cut(s)	312, 1677, 1822, 2198, 3868
BtsIMutI	CAGTG	9 cut(s)	127, 312, 1131, 1677, 1822, 2198, 3868, 4422, 4728
BveI	ACCTGC	2 cut(s)	1233, 2711
Cac8I	GCNNGC	3 cut(s)	922, 2466, 4100
CaiI	CAGNNNCTG	1 cut(s)	536
CciI	TCATGA	2 cut(s)	1033, 4081
CfoI	GCGC	1 cut(s)	49
Cfr10I	RCCGGY	1 cut(s)	3433
Cfr13I	GGNCC	8 cut(s)	213, 659, 2391, 3707, 4331, 4650, 4701, 4702
CseI	GACGC	1 cut(s)	2975
CsiI	ACCWGGT	3 cut(s)	928, 1483, 4398
CspAI	ACCGGT	1 cut(s)	3433
DinI	GGCGCC	1 cut(s)	48
DraI	TTTAAA	2 cut(s)	1569, 2653
DraIII	CACNNNGTG	1 cut(s)	3722
DrdI	GACNNNNNNGTC	1 cut(s)	3627
DriI	GACNNNNNGTC	1 cut(s)	3658
DseDI	GACNNNNNNGTC	1 cut(s)	3627
Eam1104I	CTCTTC	6 cut(s)	629, 1599, 2748, 2988, 4401, 4427
Eam1105I	GACNNNNNGTC	1 cut(s)	3658
EarI	CTCTTC	6 cut(s)	629, 1599, 2748, 2988, 4401, 4427
EciI	GGCGGA	2 cut(s)	366, 640
Eco105I	TACGTA	1 cut(s)	1385
Eco130I	CCWWGG	7 cut(s)	899, 1283, 4023, 4352, 4461, 4507, 4664
Eco24I	GRGCYC	1 cut(s)	4705
Eco31I	GGTCTC	4 cut(s)	2134, 3225, 4342, 4429
Eco32I	GATATC	2 cut(s)	961, 2902
Eco47I	GGWCC	2 cut(s)	659, 2391
Eco57I	CTGAAG	9 cut(s)	1922, 1980, 2772, 3219, 3531, 3843, 3858, 4200, 4425
Eco72I	CACGTG	1 cut(s)	3116
Eco81I	CCTNAGG	1 cut(s)	1209
Eco88I	CYCGRG	1 cut(s)	50
EcoO109I	RGGNCCY	1 cut(s)	4650
EcoRI	GAATTC	4 cut(s)	640, 1230, 1702, 3551
EcoRV	GATATC	2 cut(s)	961, 2902
EcoT14I	CCWWGG	7 cut(s)	899, 1283, 4023, 4352, 4461, 4507, 4664
EcoT22I	ATGCAT	3 cut(s)	1108, 2470, 2868
EcoT38I	GRGCYC	1 cut(s)	4705
EgeI	GGCGCC	1 cut(s)	48
EheI	GGCGCC	1 cut(s)	48
ErhI	CCWWGG	7 cut(s)	899, 1283, 4023, 4352, 4461, 4507, 4664
Esp3I	CGTCTC	1 cut(s)	4110
FaqI	GGGAC	3 cut(s)	697, 1459, 3193
FauI	CCCGC	1 cut(s)	355
FauNDI	CATATG	2 cut(s)	1141, 2822
FbaI	TGATCA	1 cut(s)	1750
FriOI	GRGCYC	1 cut(s)	4705
GlaI	GCGC	1 cut(s)	48
GsaI	CCCAGC	1 cut(s)	4214
GsuI	CTGGAG	5 cut(s)	1116, 1983, 1992, 3684, 4752
HaeII	RGCGCY	1 cut(s)	50
HaeIII	GGCC	6 cut(s)	214, 3708, 4333, 4651, 4703, 4770
HapII	CCGG	4 cut(s)	596, 794, 953, 3434
HgaI	GACGC	1 cut(s)	2975
HhaI	GCGC	1 cut(s)	49
Hin1I	GRCGYC	1 cut(s)	47
Hin6I	GCGC	1 cut(s)	47
HinP1I	GCGC	1 cut(s)	47
HincII	GTYRAC	4 cut(s)	807, 1846, 2527, 3632
HindII	GTYRAC	4 cut(s)	807, 1846, 2527, 3632
HindIII	AAGCTT	1 cut(s)	884
HpaI	GTTAAC	1 cut(s)	2527
HpaII	CCGG	4 cut(s)	596, 794, 953, 3434
HpyCH4IV	ACGT	5 cut(s)	619, 861, 1023, 1384, 3115
HpySE526I	ACGT	5 cut(s)	619, 861, 1023, 1384, 3115
Hsp92I	GRCGYC	1 cut(s)	47
HspAI	GCGC	1 cut(s)	47
KasI	GGCGCC	1 cut(s)	46
KpnI	GGTACC	1 cut(s)	776
Ksp22I	TGATCA	1 cut(s)	1750
KspAI	GTTAAC	1 cut(s)	2527
LguI	GCTCTTC	3 cut(s)	1599, 2748, 4401
LmnI	GCTCC	8 cut(s)	468, 1693, 2182, 2204, 2257, 2717, 4146, 4682
MabI	ACCWGGT	3 cut(s)	928, 1483, 4398
MaeII	ACGT	5 cut(s)	619, 861, 1023, 1384, 3115
MfeI	CAATTG	4 cut(s)	87, 1318, 3181, 3291
MflI	RGATCY	7 cut(s)	373, 1067, 2038, 2077, 2347, 2543, 3063
MhlI	GDGCHC	6 cut(s)	1690, 2739, 4557, 4664, 4705, 4728
Mly113I	GGCGCC	1 cut(s)	47
MmeI	TCCRAC	6 cut(s)	86, 860, 2096, 2814, 3491, 4332
Mph1103I	ATGCAT	3 cut(s)	1108, 2470, 2868
MroXI	GAANNNNTTC	3 cut(s)	1125, 2440, 3729
MspA1I	CMGCKG	7 cut(s)	1008, 1429, 2954, 3482, 3917, 4500, 4569
MspI	CCGG	4 cut(s)	596, 794, 953, 3434
MunI	CAATTG	4 cut(s)	87, 1318, 3181, 3291
NarI	GGCGCC	1 cut(s)	47
NciI	CCSGG	1 cut(s)	795
NcoI	CCATGG	2 cut(s)	899, 4664
NdeI	CATATG	2 cut(s)	1141, 2822
NsiI	ATGCAT	3 cut(s)	1108, 2470, 2868
NspI	RCATGY	7 cut(s)	1000, 1866, 1875, 2072, 2168, 2215, 2468
OliI	CACNNNNGTG	2 cut(s)	654, 4629
PaeI	GCATGC	1 cut(s)	2468
PagI	TCATGA	2 cut(s)	1033, 4081
PasI	CCCWGGG	1 cut(s)	239
PciSI	GCTCTTC	3 cut(s)	1599, 2748, 4401
PcsI	WCGNNNNNNNCGW	1 cut(s)	1232
PdmI	GAANNNNTTC	3 cut(s)	1125, 2440, 3729
PfeI	GAWTC	8 cut(s)	1255, 1302, 1607, 1633, 2012, 3365, 3577, 3815
PflFI	GACNNNGTC	2 cut(s)	1447, 4248
PflMI	CCANNNNNTGG	1 cut(s)	331
PfoI	TCCNGGA	1 cut(s)	1093
PinAI	ACCGGT	1 cut(s)	3433
PluTI	GGCGCC	1 cut(s)	50
PmaCI	CACGTG	1 cut(s)	3116
PmlI	CACGTG	1 cut(s)	3116
Ppu21I	YACGTR	3 cut(s)	620, 1385, 3116
PspCI	CACGTG	1 cut(s)	3116
PspFI	CCCAGC	1 cut(s)	4210
PspOMI	GGGCCC	1 cut(s)	4701
PspPI	GGNCC	8 cut(s)	213, 659, 2391, 3707, 4331, 4650, 4701, 4702
PstI	CTGCAG	5 cut(s)	1381, 2263, 2935, 3481, 3691
PstNI	CAGNNNCTG	1 cut(s)	536
PsuI	RGATCY	7 cut(s)	373, 1067, 2038, 2077, 2347, 2543, 3063
PsyI	GACNNNGTC	2 cut(s)	1447, 4248
PvuII	CAGCTG	6 cut(s)	1008, 1429, 2954, 3482, 3917, 4500
SapI	GCTCTTC	3 cut(s)	1599, 2748, 4401
Sau96I	GGNCC	8 cut(s)	213, 659, 2391, 3707, 4331, 4650, 4701, 4702
ScaI	AGTACT	3 cut(s)	1744, 2707, 2857
SduI	GDGCHC	6 cut(s)	1690, 2739, 4557, 4664, 4705, 4728
SexAI	ACCWGGT	3 cut(s)	928, 1483, 4398
SfcI	CTRYAG	9 cut(s)	1377, 2031, 2259, 2712, 2931, 3477, 3648, 3687, 4516
SfoI	GGCGCC	1 cut(s)	48
SinI	GGWCC	2 cut(s)	659, 2391
SmlI	CTYRAG	1 cut(s)	4158
SmoI	CTYRAG	1 cut(s)	4158
SnaBI	TACGTA	1 cut(s)	1385
SpeI	ACTAGT	1 cut(s)	3749
SphI	GCATGC	1 cut(s)	2468
SsiI	CCGC	7 cut(s)	211, 362, 377, 380, 625, 1492, 4567
SspDI	GGCGCC	1 cut(s)	46
SspI	AATATT	1 cut(s)	2678
StyI	CCWWGG	7 cut(s)	899, 1283, 4023, 4352, 4461, 4507, 4664
TaiI	ACGT	5 cut(s)	622, 864, 1026, 1387, 3118
TaqI	TCGA	6 cut(s)	101, 1442, 2358, 2450, 2492, 4404
TaqII	GACCGA	1 cut(s)	3617
TatI	WGTACW	4 cut(s)	1742, 1782, 2705, 2855
TauI	GCSGC	2 cut(s)	214, 382
TfiI	GAWTC	8 cut(s)	1255, 1302, 1607, 1633, 2012, 3365, 3577, 3815
TscAI	CASTG	9 cut(s)	127, 312, 1138, 1684, 1822, 2198, 3868, 4422, 4735
TspGWI	ACGGA	5 cut(s)	754, 1224, 1736, 2161, 4825
TspRI	CASTG	9 cut(s)	127, 312, 1138, 1684, 1822, 2198, 3868, 4422, 4735
Tth111I	GACNNNGTC	2 cut(s)	1447, 4248
Van91I	CCANNNNNTGG	1 cut(s)	331
VneI	GTGCAC	2 cut(s)	4553, 4724
VpaK11BI	GGWCC	2 cut(s)	659, 2391
XbaI	TCTAGA	2 cut(s)	2537, 2566
XceI	RCATGY	7 cut(s)	1000, 1866, 1875, 2072, 2168, 2215, 2468
XmaJI	CCTAGG	1 cut(s)	4507
XmnI	GAANNNNTTC	3 cut(s)	1125, 2440, 3729
ZrmI	AGTACT	3 cut(s)	1744, 2707, 2857
Zsp2I	ATGCAT	3 cut(s)	1108, 2470, 2868

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.