Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0005507

Physical Location & Seq

Genomic Coordinates Reverse (-)

53375200 .. 53383542

Gene Structure 8343 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG306300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3558 bp

ATGGATTATTATTGTTCTCCTTTCTGGAACACAGGTTTCAATTGTGGAGAAGCTGCTAACTTTGGAACACCACAATGGCTTAAAGTGGCTAAAGAAGCTGCAGTACGTAGAGCTGCTATGAATTATCTTCCTATGCTCTCCCATCAACAGCTGCTATACCTCTCGACTATGTCTTTTGTTTCAAGAGTGCCGAAGTCCCTACTACCAGGTGTGCGGAGTTCCCGTATGAGAGATAGGCAAAAGGAAGACAGAGAGCTATCAGTAAAGAAGGCTTTTATTGAAGATATTTTAAATGAGAACGATGTGTTATCTGCTCTTCTTGGGAAAGAATCAAGTTTCCGTGCAGTATTATGGAATCCTGATTTACTTCCAAATGCAAGTAAAGAGTCTTCCATACCCACTGCAAGTGCTCCTGTTGATACGAATTCAAAAGAAAATGCTACGGATACTCAGGGTGGAAATAGTACTAATGATCAGAACTTTCTGGTAGATGAGATGAGTTTGTACATGGAAAATCTTAACGATTTATATTTGGGCAGCGATGATTTGTCTGATGACTTCCAAGTTGACTCGGGAACGTTGGCATGTGTGGCATGTGGGATACTTGGGTTTCCATTTATGTCTGTGGTGCAACCATCTGAGAAAGCATCAATGGAACTTCAGCCTGAATGTATCTTGGCTGAAGAATTGCCTGGAGTTTCAGGCAATTCTCATATCTCTCCAGAGCATTGCGAATCTTTCAAAGGCTGTGCTACAGAGGATCTCTCGCCTATTTCCAATGCTTTTCCACATACAAAGGATCCCGTCTTACCTTGCACAACAAGGTTTAACAACTGTTGGAATACTGTTGATAAATTTCTGAGACCACGGAGTTTCTGTCTTGAACATGCTGTTGAAACTTTGGAGCTGTTGCAGTGTAAAGGTGGAGCAAACATGCTTGTGATTTGCCATTCTGACTATCAGAAAATAAAGGCTCCTGCTGCAGCCATTGCAGAAGAAATTGGTTGCCCTTTTAACTATAACGAGGTTCCATTGGACATTGCCTCAAATGAAGATTTGAACTTGATAGACCTTGCTGTCGATGATGGACGTGATGAATGTGGAGAAGATTGGACCTCAAAGTTGGGTATCAACCTACGGTACTGTGTCAAGGTCAGAAAAAGTTCTTCCTCGAAGCGAGTCCAGCATGCATTGGCATTGGGTGAAGTGTTCTCTAAACAAAGTCGCAGCTCAGAATTTCTGGCCGTTAACTGGAAATCTAGAAGATCTCGGACGAAGAAGGTTTATCTAGATGCCCCTTACAAACAATGTGACAGCATTGACAAAAAGAAGGAAGAAGTGGTGGAGACAAAGTCAGCAGATGCCACCTCTTTTAAAAGGGAAGCAAAAATAATTCAATATTCAAGAAGGAATAAGCGAAAACCAAGTACTTCTACAGGGGCAGGTAGGGTTGTTGAGCACCCTGCTACTTCTGAAGAGCTTGATAAACATAGCAGGAGGGCATCAGATAATAGCATTTACAACAATGGGAAGTCCACCAGCATATGTGCAAGGTTGGACTCATTTACAGCAGATGGTACTGAAATGCATCCTGATGTCCAGATGCTTGAAGCCACCAGGGATATCTGTTTGGACTCTACTCTTTCACAAGTTGCGGATACAGTTGCCTTGACAGCTGGAAGTGCTGACGCACAGATTGAAAATCGCAGTTTGGAAGAGAGGAACATGAACGGTGGAGGTTGTAATCTAGCAGCAAGCGAGTCAGATATGCAAGATGAGATCAAGATCCTTAAAGAAGCCAGGCAGAACAACTCAATTATTCCACTTGTCATTGCACGTGATGAAAGGTCTGAAAAGCATAGAGGGGAACAGGAAAACGAAAAATTGAACAAAAACGATGACAATTGTAATCTGGTGTCTGAAGGCCAGCCCCAACTTTGGTCTCAGGAGGATGTTCTTATGAATGTGGTTTCTGTTTTCACCAAATCAACAAACTTATCTGCTGCTGACTCAATTGTGACAAGTTCCGAGGAACAGATCGTCAATGCAGTCATTGAGAAATCTTGTGTGAATAGTGAAGTTTGTGAATCTATGACTTTGGGTGATGAAGTGCAGCAAGAAATCCAAACTACTAACAGAAGTAACGACAAGGCACCAGTTTCATGTAGTTCCACGCTGTTGAATGATCCAACCTTTGCTGCAGCTGAATGTCGTGTTGAATTTGAAGGAGAGACTCATATTGTAGAAGAATTTAGCAATGTTGTTTCTTCAGAATTCAAACCAGAAGAAGATATTGAGATTCCAAAAGGAAGATATGAGGAACCCAGTTTAAGTCCTACCAGACGAGTCAGTCAACACTCTCCTGCTTCTACAGACAGATTGTCTGGAGTTGCAAAGGCGTTCTGTGCTGCAGCAGATTTTCAGCCAGGCCCAACTTCACATAGTGAAGAATTTCAGGCTGCAGATAGAACTAGTGAGGGGGAATACATCTCTTCTTCAATGATAAAGATGGAAGAAACTCATCCCTTGTCATTGGAAGAATCTTCTGAAGTTCCAAGAAGAAACTCTTTGGAGGAAGGCACGAGCAATGGTGTGACTTCAGCCACTCTAGTTCAGCAAGATGCCCAAACTAAAAATGAAGCTGTGGAGGCACCTGGTCATAATTTTGTTGTACGAGAAGAAAATCAGCCTATACCTGTCTCGGTTGAAGATGAAGTTCCCAGAGTGAGCTGTGCAACAGATGTGACCTTGGATGATAAAGAACGGTGGACAAACTCGGACAGTAATAAGGAACTCATTGCTAGTCATGATACTTCAAAATGCGAGCCGTCTCGTGTTACAATTAAAACATACTTTAGAGTTAGAAGAGGGAGCCGTGCTGCTCAAGAATTGCGCAACGGTACTGAAGTTTGTATATCACAACATGATAGAGAGCTGGGAAACATTGAGCCTTCCATTTTAGACCCCAGACCAAGTCCTGAAATTGGAAGTAAAAGAAAGAGAGTGGGGCAGAAAATGGATGACAACTCCAACTTCAATGGATATATTAGGGGGCCATGTGAAGGTCTGAGACCAAGGGCTGGGAAGGATGCAACAGTTAGTGGGATAGACATCCACAACCAGGTCGAAGAGAAGCCAGTGGCAAAGAAGGTGAAGAGACCTTCAGATGTTCCCGTTCCTCCCAAGGATAAGAAGAAAGAGCAAGTAAGGAAGCCCCACAGCTGCAACCTAGGGGGCTGTAGCATGAGTTTTCAGACAAAGGAGGCGTTAATGGTGCACAAGCGTAACCGCTGCCCACATGAAGGGTGTGGTAAGAAGTTCAGTTGCCACAAGTATGCAATGGTTCACAGCCGTGTGCATGATAGTGCTAGGCCCTTCAAGTGCCCGTGGAAGGGTTGCTCCATGTCATTCAAGTGGGCATGGGCCCAGACTGAGCATATACGAGTGCACACTGGAGAAAAACCATACAAGTGCAAGGTGGACGGCTGTGGCCTCTCTTTCAGGTTTGTATCAGATTTTAGCCGTCACAGACGGAAAACAGGGCATTATGTGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003700 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008214 GO:0009653 GO:0009719 GO:0009725 GO:0009741 GO:0009826 GO:0009889 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0014070 GO:0016043 GO:0016049 GO:0016569 GO:0016570 GO:0016577 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0032451 GO:0032452 GO:0032502 GO:0032989 GO:0033169 GO:0033993 GO:0036211 GO:0040007 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045814 GO:0048519 GO:0048577 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048587 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0051276 GO:0060255 GO:0060560 GO:0065007 GO:0070076 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0140096 GO:0140110 GO:1901564 GO:1901700 GO:1903506 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

JmjC JmjN zf-C2H2

Protein Analysis

1185

Amino Acids

131.69

Weight (kDa)

5.64

Isoelectric Point (pI)

54.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005507)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04240
fragaria_vesca	FvH4_7g19090 FvH4_7g19090 FvH4_7g19090 FvH4_7g19090 FvH4_7g19090 FvH4_7g19090 FvH4_7g19090 FvH4_7g19090 FvH4_7g19090
malus_domestica	MD01G1106000.v1.1 MD07G1172400.v1.1
prunus_persica	Prupe.2G211400_v2.0.a1 Prupe.2G211400_v2.0.a1
pyrus_communis	pycom01g13280 pycom07g16690
rosa_chinensis	RchiOBHm_Chr1g0362971
rosa_laevigata	RLG00000027605
rosa_multiflora	Rmu_sc0000174.1_g000009
rosa_roxburghii	Rroxscaffold_4G00293590
rosa_rugosa	Rorug01G0302900 Rorug01G0303000 Rorug01G0303100 Rorug01G0303200
rosa_samantha	Rh1AG312100 Rh1BG275600 Rh1CG292500 Rh1DG306300
rosa_wichuraiana	Rw1G027660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	1076, 2349
Acc16I	TGCGCA	1 cut(s)	2894
Acc36I	ACCTGC	1 cut(s)	1433
AccB1I	GGYRCC	2 cut(s)	2152, 2650
AccB7I	CCANNNNNTGG	1 cut(s)	3080
AciI	CCGC	3 cut(s)	214, 1655, 3289
AclI	AACGTT	1 cut(s)	578
AclWI	GGATC	5 cut(s)	768, 794, 807, 1780, 2180
AcoI	YGGCCR	1 cut(s)	1242
AcsI	RAATTY	7 cut(s)	424, 854, 1235, 2219, 2249, 2273, 2450
AcuI	CTGAAG	9 cut(s)	644, 702, 1494, 1941, 2253, 2568, 2583, 2925, 3147
AcvI	CACGTG	1 cut(s)	1838
AdeI	CACNNNGTG	1 cut(s)	2444
AfaI	GTAC	8 cut(s)	105, 466, 506, 1142, 1429, 1579, 2673, 2902
AfiI	CCNNNNNNNGG	9 cut(s)	1251, 1938, 2984, 3062, 3080, 3121, 3302, 3391, 3392
AhdI	GACNNNNNGTC	1 cut(s)	2380
AhlI	ACTAGT	1 cut(s)	2471
AjiI	CACGTC	1 cut(s)	1091
AjnI	CCWGG	7 cut(s)	205, 691, 1616, 1799, 2425, 2653, 3120
AleI	CACNNNNGTG	1 cut(s)	3351
Alw21I	GWGCWC	4 cut(s)	412, 1461, 3279, 3450
Alw26I	GTCTC	8 cut(s)	856, 1340, 1947, 2225, 2704, 2835, 3064, 3151
Alw44I	GTGCAC	2 cut(s)	3275, 3446
AlwI	GGATC	5 cut(s)	768, 794, 807, 1780, 2180
Ama87I	CYCGRG	1 cut(s)	571
AoxI	GGCC	7 cut(s)	1242, 1924, 2428, 3053, 3371, 3423, 3490
ApaI	GGGCCC	1 cut(s)	3427
ApaLI	GTGCAC	2 cut(s)	3275, 3446
ApoI	RAATTY	7 cut(s)	424, 854, 1235, 2219, 2249, 2273, 2450
Asp700I	GAANNNNTTC	2 cut(s)	1162, 2451
AspA2I	CCTAGG	1 cut(s)	3229
AspLEI	GCGC	1 cut(s)	2895
AspS9I	GGNCC	6 cut(s)	1113, 2429, 3053, 3372, 3423, 3424
AsuHPI	GGTGA	4 cut(s)	1214, 1972, 2114, 3163
AvaI	CYCGRG	1 cut(s)	571
AvaII	GGWCC	1 cut(s)	1113
AvrII	CCTAGG	1 cut(s)	3229
BaeGI	GKGCMC	4 cut(s)	3279, 3386, 3427, 3450
BaeI	ACNNNNGTAYC	4 cut(s)	593, 626, 2892, 2925
BamHI	GGATCC	1 cut(s)	799
BanI	GGYRCC	2 cut(s)	2152, 2650
BanII	GRGCYC	1 cut(s)	3427
BarI	GAAGNNNNNNTAC	4 cut(s)	87, 119, 373, 405
BauI	CACGAG	2 cut(s)	2581, 2832
BbrPI	CACGTG	1 cut(s)	1838
BbsI	GAAGAC	2 cut(s)	252, 381
Bbv12I	GWGCWC	4 cut(s)	412, 1461, 3279, 3450
BccI	CCATC	5 cut(s)	150, 643, 1079, 1568, 2503
BceAI	ACGGC	6 cut(s)	1229, 2812, 2859, 3336, 3499, 3507
BciT130I	CCWGG	7 cut(s)	207, 693, 1618, 1801, 2427, 2655, 3122
BciVI	GTATCC	3 cut(s)	439, 594, 1651
BclI	TGATCA	1 cut(s)	472
BcoDI	GTCTC	8 cut(s)	856, 1340, 1947, 2225, 2704, 2835, 3064, 3151
BcuI	ACTAGT	1 cut(s)	2471
BfaI	CTAG	8 cut(s)	1260, 1289, 1748, 2472, 2609, 2802, 3230, 3369
BfmI	CTRYAG	9 cut(s)	99, 753, 981, 1434, 2199, 2370, 2409, 2460, 3238
BfuAI	ACCTGC	1 cut(s)	1433
BfuI	GTATCC	3 cut(s)	439, 594, 1651
BglII	AGATCT	1 cut(s)	1265
BlnI	CCTAGG	1 cut(s)	3229
BmcAI	AGTACT	2 cut(s)	466, 1429
Bme1390I	CCNGG	7 cut(s)	207, 693, 1618, 1801, 2427, 2655, 3122
Bme18I	GGWCC	1 cut(s)	1113
BmeRI	GACNNNNNGTC	1 cut(s)	2380
BmeT110I	CYCGRG	1 cut(s)	571
BmgBI	CACGTC	1 cut(s)	1091
BmgT120I	GGNCC	6 cut(s)	1113, 2429, 3053, 3372, 3423, 3424
BmiI	GGNNCC	9 cut(s)	801, 975, 1029, 2154, 2322, 2652, 2873, 3054, 3425
BmrFI	CCNGG	7 cut(s)	207, 693, 1618, 1801, 2427, 2655, 3122
BmrI	ACTGGG	1 cut(s)	2319
BmsI	GCATC	8 cut(s)	656, 1282, 1351, 1511, 1593, 1597, 2611, 3079
BmuI	ACTGGG	1 cut(s)	2319
BpiI	GAAGAC	2 cut(s)	252, 381
BplI	GAGNNNNNCTC	2 cut(s)	749, 781
BpmI	CTGGAG	4 cut(s)	705, 714, 2406, 3474
BpuEI	CTTGAG	1 cut(s)	2868
BsaAI	YACGTR	2 cut(s)	107, 1838
BsaBI	GATNNNNATC	2 cut(s)	1784, 3110
BsaI	GGTCTC	4 cut(s)	856, 1947, 3064, 3151
BsaJI	CCNNGG	8 cut(s)	866, 1617, 2028, 2748, 3074, 3183, 3229, 3386
BsaXI	ACNNNNNCTCC	6 cut(s)	208, 238, 862, 892, 1337, 1367
Bsc4I	CCNNNNNNNGG	9 cut(s)	1251, 1938, 2984, 3062, 3080, 3121, 3302, 3391, 3392
Bse1I	ACTGG	5 cut(s)	1256, 2156, 2325, 3137, 3457
Bse3DI	GCAATG	8 cut(s)	727, 987, 1038, 1830, 2263, 2593, 2796, 3345
Bse8I	GATNNNNATC	2 cut(s)	1784, 3110
BseBI	CCWGG	7 cut(s)	207, 693, 1618, 1801, 2427, 2655, 3122
BseDI	CCNNGG	8 cut(s)	866, 1617, 2028, 2748, 3074, 3183, 3229, 3386
BseGI	GGATG	7 cut(s)	1588, 1957, 2521, 2758, 3025, 3094, 3111
BseJI	GATNNNNATC	2 cut(s)	1784, 3110
BseLI	CCNNNNNNNGG	9 cut(s)	1251, 1938, 2984, 3062, 3080, 3121, 3302, 3391, 3392
BseMI	GCAATG	8 cut(s)	727, 987, 1038, 1830, 2263, 2593, 2796, 3345
BseMII	CTCAG	7 cut(s)	464, 630, 851, 1245, 1958, 3059, 3423
BseNI	ACTGG	5 cut(s)	1256, 2156, 2325, 3137, 3457
BseSI	GKGCMC	4 cut(s)	3279, 3386, 3427, 3450
BseYI	CCCAGC	2 cut(s)	2935, 3080
BsgI	GTGCAG	2 cut(s)	363, 2132
BshFI	GGCC	7 cut(s)	1244, 1926, 2430, 3055, 3373, 3425, 3492
BshNI	GGYRCC	2 cut(s)	2152, 2650
BsiHKAI	GWGCWC	4 cut(s)	412, 1461, 3279, 3450
BsiHKCI	CYCGRG	1 cut(s)	571
BslFI	GGGAC	1 cut(s)	181
BslI	CCNNNNNNNGG	9 cut(s)	1251, 1938, 2984, 3062, 3080, 3121, 3302, 3391, 3392
BsmAI	GTCTC	8 cut(s)	856, 1340, 1947, 2225, 2704, 2835, 3064, 3151
BsmBI	CGTCTC	1 cut(s)	2835
BsmFI	GGGAC	1 cut(s)	181
BsnI	GGCC	7 cut(s)	1244, 1926, 2430, 3055, 3373, 3425, 3492
Bso31I	GGTCTC	4 cut(s)	856, 1947, 3064, 3151
BsoBI	CYCGRG	1 cut(s)	571
Bsp120I	GGGCCC	1 cut(s)	3423
Bsp1286I	GDGCHC	6 cut(s)	412, 1461, 3279, 3386, 3427, 3450
Bsp1407I	TGTACA	1 cut(s)	504
Bsp143I	GATC	8 cut(s)	472, 760, 799, 1265, 1779, 1785, 2037, 2185
BspACI	CCGC	3 cut(s)	214, 1655, 3289
BspANI	GGCC	7 cut(s)	1244, 1926, 2430, 3055, 3373, 3425, 3492
BspCNI	CTCAG	7 cut(s)	463, 631, 852, 1244, 1957, 3060, 3424
BspHI	TCATGA	1 cut(s)	2806
BspLI	GGNNCC	9 cut(s)	801, 975, 1029, 2154, 2322, 2652, 2873, 3054, 3425
BspMAI	CTGCAG	5 cut(s)	103, 985, 2203, 2413, 2464
BspMI	ACCTGC	1 cut(s)	1433
BspPI	GGATC	5 cut(s)	768, 794, 807, 1780, 2180
BspQI	GCTCTTC	2 cut(s)	321, 1470
BspT107I	GGYRCC	2 cut(s)	2152, 2650
BspTNI	GGTCTC	4 cut(s)	856, 1947, 3064, 3151
BsrDI	GCAATG	8 cut(s)	727, 987, 1038, 1830, 2263, 2593, 2796, 3345
BsrGI	TGTACA	1 cut(s)	504
BsrI	ACTGG	5 cut(s)	1256, 2156, 2325, 3137, 3457
BssECI	CCNNGG	8 cut(s)	866, 1617, 2028, 2748, 3074, 3183, 3229, 3386
BssMI	GATC	8 cut(s)	472, 760, 799, 1265, 1779, 1785, 2037, 2185
BssSI	CACGAG	2 cut(s)	2581, 2832
BssT1I	CCWWGG	4 cut(s)	2748, 3074, 3183, 3229
Bst2BI	CACGAG	2 cut(s)	2581, 2832
Bst2UI	CCWGG	7 cut(s)	207, 693, 1618, 1801, 2427, 2655, 3122
Bst6I	CTCTTC	7 cut(s)	321, 1470, 1710, 2497, 2860, 3123, 3149
BstAPI	GCANNNNNTGC	1 cut(s)	989
BstAUI	TGTACA	1 cut(s)	504
BstBAI	YACGTR	2 cut(s)	107, 1838
BstC8I	GCNNGC	4 cut(s)	1188, 1756, 1928, 2825
BstDEI	CTNAG	7 cut(s)	450, 639, 860, 1231, 1944, 3068, 3432
BstDSI	CCRYGG	2 cut(s)	866, 3386
BstF5I	GGATG	7 cut(s)	1588, 1957, 2521, 2758, 3025, 3094, 3111
BstHHI	GCGC	1 cut(s)	2895
BstKTI	GATC	8 cut(s)	475, 763, 802, 1268, 1782, 1788, 2040, 2188
BstMAI	GTCTC	8 cut(s)	856, 1340, 1947, 2225, 2704, 2835, 3064, 3151
BstMBI	GATC	8 cut(s)	472, 760, 799, 1265, 1779, 1785, 2037, 2185
BstMWI	GCNNNNNNNGC	9 cut(s)	95, 590, 980, 989, 1183, 1673, 1682, 2405, 2648
BstNI	CCWGG	7 cut(s)	207, 693, 1618, 1801, 2427, 2655, 3122
BstNSI	RCATGY	5 cut(s)	588, 597, 890, 937, 1190
BstSCI	CCNGG	7 cut(s)	205, 691, 1616, 1799, 2425, 2653, 3120
BstSFI	CTRYAG	9 cut(s)	99, 753, 981, 1434, 2199, 2370, 2409, 2460, 3238
BstSLI	GKGCMC	4 cut(s)	3279, 3386, 3427, 3450
BstSNI	TACGTA	1 cut(s)	107
BstV2I	GAAGAC	2 cut(s)	252, 381
BstX2I	RGATCY	4 cut(s)	760, 799, 1265, 1785
BstYI	RGATCY	4 cut(s)	760, 799, 1265, 1785
BsuI	GTATCC	3 cut(s)	439, 594, 1651
BsuRI	GGCC	7 cut(s)	1244, 1926, 2430, 3055, 3373, 3425, 3492
BtgI	CCRYGG	2 cut(s)	866, 3386
BtgZI	GCGATG	1 cut(s)	555
BtrI	CACGTC	1 cut(s)	1091
BtsCI	GGATG	7 cut(s)	1588, 1957, 2521, 2758, 3025, 3094, 3111
BtsI	GCAGTG	2 cut(s)	399, 920
BtsIMutI	CAGTG	4 cut(s)	399, 920, 3144, 3450
BveI	ACCTGC	1 cut(s)	1433
Cac8I	GCNNGC	4 cut(s)	1188, 1756, 1928, 2825
CciI	TCATGA	1 cut(s)	2806
CfoI	GCGC	1 cut(s)	2895
Cfr13I	GGNCC	6 cut(s)	1113, 2429, 3053, 3372, 3423, 3424
CseI	GACGC	1 cut(s)	1697
CsiI	ACCWGGT	3 cut(s)	205, 2653, 3120
Csp6I	GTAC	8 cut(s)	104, 465, 505, 1141, 1428, 1578, 2672, 2901
CviQI	GTAC	8 cut(s)	104, 465, 505, 1141, 1428, 1578, 2672, 2901
DdeI	CTNAG	7 cut(s)	450, 639, 860, 1231, 1944, 3068, 3432
DpnI	GATC	8 cut(s)	474, 762, 801, 1267, 1781, 1787, 2039, 2187
DpnII	GATC	8 cut(s)	472, 760, 799, 1265, 1779, 1785, 2037, 2185
DraI	TTTAAA	2 cut(s)	291, 1375
DraIII	CACNNNGTG	1 cut(s)	2444
DrdI	GACNNNNNNGTC	2 cut(s)	1076, 2349
DriI	GACNNNNNGTC	1 cut(s)	2380
DseDI	GACNNNNNNGTC	2 cut(s)	1076, 2349
EaeI	YGGCCR	1 cut(s)	1242
Eam1104I	CTCTTC	7 cut(s)	321, 1470, 1710, 2497, 2860, 3123, 3149
Eam1105I	GACNNNNNGTC	1 cut(s)	2380
EarI	CTCTTC	7 cut(s)	321, 1470, 1710, 2497, 2860, 3123, 3149
Eco105I	TACGTA	1 cut(s)	107
Eco130I	CCWWGG	4 cut(s)	2748, 3074, 3183, 3229
Eco24I	GRGCYC	1 cut(s)	3427
Eco31I	GGTCTC	4 cut(s)	856, 1947, 3064, 3151
Eco32I	GATATC	1 cut(s)	1624
Eco47I	GGWCC	1 cut(s)	1113
Eco57I	CTGAAG	9 cut(s)	644, 702, 1494, 1941, 2253, 2568, 2583, 2925, 3147
Eco72I	CACGTG	1 cut(s)	1838
Eco88I	CYCGRG	1 cut(s)	571
EcoO109I	RGGNCCY	1 cut(s)	3372
EcoRI	GAATTC	2 cut(s)	424, 2273
EcoRII	CCWGG	7 cut(s)	205, 691, 1616, 1799, 2425, 2653, 3120
EcoRV	GATATC	1 cut(s)	1624
EcoT14I	CCWWGG	4 cut(s)	2748, 3074, 3183, 3229
EcoT22I	ATGCAT	2 cut(s)	1192, 1590
EcoT38I	GRGCYC	1 cut(s)	3427
ErhI	CCWWGG	4 cut(s)	2748, 3074, 3183, 3229
Esp3I	CGTCTC	1 cut(s)	2835
FalI	AAGNNNNNCTT	2 cut(s)	2551, 2583
FaqI	GGGAC	1 cut(s)	181
FauNDI	CATATG	1 cut(s)	1544
FbaI	TGATCA	1 cut(s)	472
FokI	GGATG	7 cut(s)	1575, 1964, 2508, 2765, 3032, 3098, 3101
FriOI	GRGCYC	1 cut(s)	3427
FspBI	CTAG	8 cut(s)	1260, 1289, 1748, 2472, 2609, 2802, 3230, 3369
FspI	TGCGCA	1 cut(s)	2894
GlaI	GCGC	1 cut(s)	2894
GsaI	CCCAGC	2 cut(s)	2939, 3084
GsuI	CTGGAG	4 cut(s)	705, 714, 2406, 3474
HaeIII	GGCC	7 cut(s)	1244, 1926, 2430, 3055, 3373, 3425, 3492
HgaI	GACGC	1 cut(s)	1697
HhaI	GCGC	1 cut(s)	2895
Hin6I	GCGC	1 cut(s)	2893
HinP1I	GCGC	1 cut(s)	2893
HincII	GTYRAC	3 cut(s)	568, 1249, 2354
HindII	GTYRAC	3 cut(s)	568, 1249, 2354
HpaI	GTTAAC	1 cut(s)	1249
HphI	GGTGA	4 cut(s)	1214, 1972, 2114, 3163
Hpy166II	GTNNAC	9 cut(s)	568, 1249, 1536, 2354, 2769, 3277, 3346, 3448, 3481
Hpy8I	GTNNAC	9 cut(s)	568, 1249, 1536, 2354, 2769, 3277, 3346, 3448, 3481
HpyCH4IV	ACGT	4 cut(s)	106, 578, 1090, 1837
HpyF10VI	GCNNNNNNNGC	9 cut(s)	95, 590, 980, 989, 1183, 1673, 1682, 2405, 2648
HpyF3I	CTNAG	7 cut(s)	450, 639, 860, 1231, 1944, 3068, 3432
HpySE526I	ACGT	4 cut(s)	106, 578, 1090, 1837
HspAI	GCGC	1 cut(s)	2893
Ksp22I	TGATCA	1 cut(s)	472
KspAI	GTTAAC	1 cut(s)	1249
Kzo9I	GATC	8 cut(s)	472, 760, 799, 1265, 1779, 1785, 2037, 2185
LguI	GCTCTTC	2 cut(s)	321, 1470
LmnI	GCTCC	6 cut(s)	415, 904, 926, 979, 2871, 3404
LweI	GCATC	8 cut(s)	656, 1282, 1351, 1511, 1593, 1597, 2611, 3079
MabI	ACCWGGT	3 cut(s)	205, 2653, 3120
MaeI	CTAG	8 cut(s)	1260, 1289, 1748, 2472, 2609, 2802, 3230, 3369
MaeII	ACGT	4 cut(s)	106, 578, 1090, 1837
MaeIII	GTNAC	8 cut(s)	1310, 2017, 2141, 2593, 2743, 2836, 3284, 3524
MalI	GATC	8 cut(s)	474, 762, 801, 1267, 1781, 1787, 2039, 2187
MboI	GATC	8 cut(s)	472, 760, 799, 1265, 1779, 1785, 2037, 2185
MfeI	CAATTG	3 cut(s)	40, 1903, 2013
MflI	RGATCY	4 cut(s)	760, 799, 1265, 1785
MhlI	GDGCHC	6 cut(s)	412, 1461, 3279, 3386, 3427, 3450
MlyI	GAGTC	9 cut(s)	395, 563, 1188, 1553, 1628, 1769, 2003, 2227, 2355
MmeI	TCCRAC	4 cut(s)	818, 1536, 2213, 3054
Mph1103I	ATGCAT	2 cut(s)	1192, 1590
MroXI	GAANNNNTTC	2 cut(s)	1162, 2451
MslI	CAYNNNNRTG	8 cut(s)	73, 938, 1593, 3333, 3351, 3363, 3412, 3469
MspA1I	CMGCKG	5 cut(s)	151, 1676, 2204, 3222, 3291
MspR9I	CCNGG	7 cut(s)	207, 693, 1618, 1801, 2427, 2655, 3122
MunI	CAATTG	3 cut(s)	40, 1903, 2013
MvaI	CCWGG	7 cut(s)	207, 693, 1618, 1801, 2427, 2655, 3122
MwoI	GCNNNNNNNGC	9 cut(s)	95, 590, 980, 989, 1183, 1673, 1682, 2405, 2648
NdeI	CATATG	1 cut(s)	1544
NdeII	GATC	8 cut(s)	472, 760, 799, 1265, 1779, 1785, 2037, 2185
NlaIV	GGNNCC	9 cut(s)	801, 975, 1029, 2154, 2322, 2652, 2873, 3054, 3425
NmuCI	GTSAC	5 cut(s)	1310, 2017, 2593, 2743, 3524
NsbI	TGCGCA	1 cut(s)	2894
NsiI	ATGCAT	2 cut(s)	1192, 1590
NspI	RCATGY	5 cut(s)	588, 597, 890, 937, 1190
OliI	CACNNNNGTG	1 cut(s)	3351
PaeI	GCATGC	1 cut(s)	1190
PagI	TCATGA	1 cut(s)	2806
PciSI	GCTCTTC	2 cut(s)	321, 1470
PdmI	GAANNNNTTC	2 cut(s)	1162, 2451
PfeI	GAWTC	6 cut(s)	329, 355, 734, 2087, 2299, 2540
PflFI	GACNNNGTC	3 cut(s)	169, 1351, 2973
PflMI	CCANNNNNTGG	1 cut(s)	3080
PleI	GAGTC	9 cut(s)	394, 563, 1187, 1553, 1628, 1768, 2003, 2227, 2354
PmaCI	CACGTG	1 cut(s)	1838
PmlI	CACGTG	1 cut(s)	1838
PpsI	GAGTC	9 cut(s)	394, 563, 1187, 1553, 1628, 1768, 2003, 2227, 2354
Ppu21I	YACGTR	2 cut(s)	107, 1838
Psp1406I	AACGTT	1 cut(s)	578
Psp6I	CCWGG	7 cut(s)	205, 691, 1616, 1799, 2425, 2653, 3120
PspCI	CACGTG	1 cut(s)	1838
PspFI	CCCAGC	2 cut(s)	2935, 3080
PspGI	CCWGG	7 cut(s)	205, 691, 1616, 1799, 2425, 2653, 3120
PspN4I	GGNNCC	9 cut(s)	801, 975, 1029, 2154, 2322, 2652, 2873, 3054, 3425
PspOMI	GGGCCC	1 cut(s)	3423
PspPI	GGNCC	6 cut(s)	1113, 2429, 3053, 3372, 3423, 3424
PstI	CTGCAG	5 cut(s)	103, 985, 2203, 2413, 2464
PsuI	RGATCY	4 cut(s)	760, 799, 1265, 1785
PsyI	GACNNNGTC	3 cut(s)	169, 1351, 2973
PvuII	CAGCTG	4 cut(s)	151, 1676, 2204, 3222
RsaI	GTAC	8 cut(s)	105, 466, 506, 1142, 1429, 1579, 2673, 2902
RsaNI	GTAC	8 cut(s)	104, 465, 505, 1141, 1428, 1578, 2672, 2901
RseI	CAYNNNNRTG	8 cut(s)	73, 938, 1593, 3333, 3351, 3363, 3412, 3469
SapI	GCTCTTC	2 cut(s)	321, 1470
Sau3AI	GATC	8 cut(s)	472, 760, 799, 1265, 1779, 1785, 2037, 2185
Sau96I	GGNCC	6 cut(s)	1113, 2429, 3053, 3372, 3423, 3424
ScaI	AGTACT	2 cut(s)	466, 1429
SchI	GAGTC	9 cut(s)	395, 563, 1188, 1553, 1628, 1769, 2003, 2227, 2355
ScrFI	CCNGG	7 cut(s)	207, 693, 1618, 1801, 2427, 2655, 3122
SduI	GDGCHC	6 cut(s)	412, 1461, 3279, 3386, 3427, 3450
SexAI	ACCWGGT	3 cut(s)	205, 2653, 3120
SfaNI	GCATC	8 cut(s)	656, 1282, 1351, 1511, 1593, 1597, 2611, 3079
SfcI	CTRYAG	9 cut(s)	99, 753, 981, 1434, 2199, 2370, 2409, 2460, 3238
SinI	GGWCC	1 cut(s)	1113
SmiMI	CAYNNNNRTG	8 cut(s)	73, 938, 1593, 3333, 3351, 3363, 3412, 3469
SmlI	CTYRAG	1 cut(s)	2883
SmoI	CTYRAG	1 cut(s)	2883
SnaBI	TACGTA	1 cut(s)	107
SpeI	ACTAGT	1 cut(s)	2471
SphI	GCATGC	1 cut(s)	1190
SsiI	CCGC	3 cut(s)	214, 1655, 3289
SspI	AATATT	1 cut(s)	1400
SspMI	CTAG	8 cut(s)	1260, 1289, 1748, 2472, 2609, 2802, 3230, 3369
StyD4I	CCNGG	7 cut(s)	205, 691, 1616, 1799, 2425, 2653, 3120
StyI	CCWWGG	4 cut(s)	2748, 3074, 3183, 3229
TaiI	ACGT	4 cut(s)	109, 581, 1093, 1840
TaqI	TCGA	4 cut(s)	164, 1080, 1172, 3126
TatI	WGTACW	3 cut(s)	464, 504, 1427
TfiI	GAWTC	6 cut(s)	329, 355, 734, 2087, 2299, 2540
TscAI	CASTG	4 cut(s)	406, 920, 3144, 3457
TseFI	GTSAC	5 cut(s)	1310, 2017, 2593, 2743, 3524
Tsp45I	GTSAC	5 cut(s)	1310, 2017, 2593, 2743, 3524
TspGWI	ACGGA	4 cut(s)	329, 458, 883, 3547
TspRI	CASTG	4 cut(s)	406, 920, 3144, 3457
Tth111I	GACNNNGTC	3 cut(s)	169, 1351, 2973
Van91I	CCANNNNNTGG	1 cut(s)	3080
VneI	GTGCAC	2 cut(s)	3275, 3446
VpaK11BI	GGWCC	1 cut(s)	1113
XapI	RAATTY	7 cut(s)	424, 854, 1235, 2219, 2249, 2273, 2450
XbaI	TCTAGA	2 cut(s)	1259, 1288
XceI	RCATGY	5 cut(s)	588, 597, 890, 937, 1190
XmaJI	CCTAGG	1 cut(s)	3229
XmnI	GAANNNNTTC	2 cut(s)	1162, 2451
XspI	CTAG	8 cut(s)	1260, 1289, 1748, 2472, 2609, 2802, 3230, 3369
ZrmI	AGTACT	2 cut(s)	466, 1429
Zsp2I	ATGCAT	2 cut(s)	1192, 1590

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.