Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0005507

Physical Location & Seq

Genomic Coordinates Reverse (-)

24961209 .. 24968468

Gene Structure 7260 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1172400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4785 bp

ATGGGTGATTTTGAAAGACCCAGTTGGCTCGAAGGGTTGCCATTGGCACCCGTCTTCCGGCCGACGCATACTGAATTCGCAGACCCGATTGCTTATATATCGAAAATCGAGAAGGAAGCTAGTGGATTTGGTATTTGCAAGATTATCCCACCATTGCCAAAACCCTCAAAAAGATATGTTTTTAGCAACTTGAATAAGTCACTTTTGAAGTGTCCAGAATTGGGTAGTGATGTAAATTATTTAGAGGGTTGTTCTCCGATGAGTACGGGTTCTGGGGATGGTGGTAATGATGGGGAGGCTAGGGCAGTCTTTACCACAAGGCACCAAGAATTGGGTCAGAGTGTGAAAAAGGTGAAAGGGGCAGTAGTTCAGAATCCGCCTTCGGGTGTTGATAAGCAAGTGTGGCAAAGTGGGGAAATTTATACTTTGGAGCAGTTTGAAACTAAGTCTAGGGCTTTTGCAAGGAGCATGCTAGGTTCAATTAAGGAGGTTACCCCATTGGTTATAGAGGAAATGTTTTGGAAGGCAGCTTCTGAGAAGCCAATATATATTGAGTATGCAAATGATGTGCCTGGGTCTGCTTTTGAAGAGCCTGTGGGACAATTCCGCTCTTCTCACAGGCGGAGGCGGAAGAGGAACTCCTACCAGAGAAGAAATGAAATCTCTGATAGCAAGAAAGGTGAAATTATCAGTATCAGCGAAAGAAACTCCCATATTGAGGAAGTTAAGAATGCTACTCATATGAATGTTTCGGATACATGTTCAGAGGCATCCAAATCATCTACTGCTCCAGAAATATTATCAGCAGATGAAACTCCCCAATCATCTAGGCAAAAAAATCCAAATTCATGTTGTGATATGGAAGGTACTGCTGGTTGGAAGCTTTCAAACAGTCCTTGGAACTTACAAGTGATTGCACGTTCACCTGGTTCACTTACTCGTTTCATGCCCGATGATATCCCGGGTGTTACTTCTCCTATGGTTTACATTGGCATGTTGTTCAGTTGGTTTGCTTGGCACGTTGAAGATCATGAGCTTCACAGTATGAATTTTCTTCACACTGGATCTTCAAAGACTTGGTATTCTGTTCCAGGCGATTATGCATTTGATTTTGAGGAACTTATTCGCACTGAGGCATTTGGTAGTAATCTTGACCGCCTAGCAGCTGCTCTCTCACTATTGGGCAATAAAACAACTTTAATTTCACCTGAGGCTGTTGTTGCAGCAGGGATTCCTTGTTGCAGGTTAATACAGAACTCTGGTGAATTTGTTGTGACTTTTCCAAGGGCTTACCATGTAGGATTCAGCCACGGTTTTAACTGTGGGGAAGCTGCTAACTTTGGAACACCACAATGGCTTAAAGTAGCTAAAGAAGCTGCAGTACGTAGAGCTGCTATGAATTACCTTCCTATGCTCTCCCATCAACAGCTGCTATACCTCTTGACCATGTCTTTTGTTTCGAGGGTGCCAAGGTCCCTACTACCAGGTGTGCGAAGTTCGCGTAGGAGAGATCGGCAAAAGGAAGAAAAGGAGTTTTCAGTCAAGAAGGCTTTTATTGAAGATATATTAAAAGAAAACAATGTGTTGTCTGTCCTTCTTGGAAAAGAATCAAGTTACCACGCAGTATTATGGAACCATGATTTACTTCCATATACAAGTAAAGATTCCGTAACACCCAGTGGTGGTGCTGCTGTTGATATGAATCCAAAGGAAGATGCTACCCATATTCAGTGTGGAAATTACGATAATGATCAGAAAATGCTGATTGACGAGATGAGTTTGTATATGGAAAATATGAATGATTTGTATTTGGGAAGTGATGATTTATCACGGGACTTTCAAGTCGACTCTGGCACATTGGCATGCGTGGCTTGTGGTATACTTGGGTTTCCATTTATGTCTGTTGTGCAACCATCTGAGAAAGCATCAATGAAACTGCAAACTGAAAATTTTACCGCTCAAGGTTCCCCTGGCATTTCAGGACTTGAAAAGTCTCATTCGTTTCCAGACTGTCATGCATCAGTCATGGGATGTGTTACAGAAGAGGACCTCGTTTCTGTTCCCAACTTTTTCCCACCTGCGAAAGATCCCCTAATTCCTTCCACAGACAATCTAAAAAGGGGTTGGAATACTGTTAATAAGTTTCTGAGACCAAGGAGTTTCTGCCTTGAGCACGCTGTGGAAATTGTGGACCTGTTGCAGTGCAAAGGTGGAGCGAACATGCTTGTAATTTGCCATTCTGACTATCAGAAAATAAAAGCTCCGGCTGCAGCAATTGCAGAGGAGATTGGTTGCTCTTTCAATTATAATGAGGTTCCATTGGATAATGCATCACAGGAAGATCTGAATTTGATAGAGCTTGCTGTTGATGATGAACGTGATGAATGTGGAGAAGACTGGACCTCGAAGTTGGGTATCAACCTACGCTACTGTGTCAAGGTCAGAAAGAATTCGTCCTCAAAGCAAGTCCGGCATGCATTGACATTGGGTGGTTTGTTCTCCAAACAAAGTCCCAACTCAAATTTTCTGGCCGTCAAATGGCAATCAAGAAGATCTCGCTCTAAAAAGCTTAATCATCCAGTGGATTGTAAACCATGTGAGAACATTGAGGAAAAGGATGAAGTAGTGTGTGGAAGGTCAGATGGGGCCTCTTTTAAGAGGGAAGAAAAAATAATTCAATATTCAAGAAGGAAGTCGAAGCTTAAAGTAGGGAGTTCTACAGGAGCGGGTAGGGTCTGTGGGCACCCTGGTACAGGTGTTGAGGGTGGTAAAGATAGTAGAATGGCATCAGAAAGCAACATTTGCAACAATGGGAATTCCACAAGCAGTTGTGCAAGATTTGATTCCTCTGCGTCAAGCGGAATGTCTGAAATGTATCCTGTTGTCCAGATGTCTGAAGCAACCAGGGATATCAGTTTGTACTCTACTCCTTCACAAGTTGTGGATACACTTACCACTGCCATGTTAATAGCTGGTAGTGTTGAGGCACAGGTTGATAATCACAGTTTTGAAGAAAGAAACATGAACGGTGAAGGTTGTAAGTTTGCATCAAGAAATATTTCTGATGTGCAAGATGAGATGAGGATACTTGAAGAAGCCAGTCAAAGAAAGTCTGCTACTCCACCTGTCATTGCAGCTGATGAAACGGTTCCAATGCAAATAGAGGAGCAGAAAATGGAAAAAATTAACAATACCAGTGACAATTGTAATCTAGTATCGGAAGGGCAGTCCCAAGTTATGGCTGGCGTATCTGTTCTTGCCGAGACAACAAACTTATGTGCTGCCGACTCATTTGTTACAAGTTCTGAACCACAGATGGTGAATACAGTCCTAGAGAAATCTTGCATAAGCAATGAAGTTTGTGATTCCATGACTTCGGATGATGAAGTGCAGCAAGAAATCGAAACTACCAACAGAAGTAAAAACAAGGCGCCATTTCCATGTGGTTCCCATAATGCTGAAGACTCGAATGATGATGTATCTTTAGTATTCAAACTGGAAGAAGAAATTAAAACTCCGAAAGGAGAAAATGAGGAACCCAGTTTAAGTCCTAGAAGACAACTAATTGAGCCCTCTCCTGTTTCGGTGGAAGGAACTTCTGGAGCTTCAAGAGAGCTCTGTGCTGCAGCAGATTTTTGCCCTGGTCCAATTTCACACAGTGAAGAATTTCTAACTGCAGATAGGAGTGGGGGGGGACATGTCTCAACTTCATTGACACAAATGGAAATAATTCAACCTTGTATCTCAGTGGAAGAATCTTCTGAAGTGCCAAGGGGAGGCTCTTCTGTGGAAGGCACAGATGATGGTGTGACTTCAGACACTGTAGTGCAGCAAGAAGTCCAGACTACAAATGGAGCTATAGAGGCACCCATACTTAGTCTCATCATAGAAAGAGAAATGCAGCCCACACCTCGCTTGGTTGAAGAATTTGAGGTTCCCAGAGTGACCTGTGAAACAATAAACATCAGCGGTTCTATGGCCTTGGATGAAGGGTGGAAAAATCGTACTACAAATGGTATTGAGGAACTCATTCCTAGTCGAGATACTTCAAAATGCCAACCATCTCCTTCAATCCAAACATATTCTAGAGCTAAAAGAAAGCCTCATGCTGCTCCAGACTTACGCAATGGTGGTAAGGTTTGCTTATCTCTACATGATAAAGAGATGGAAAACATCGGGTCCTCAAGTGCGGTTGCACCAAGTCCTGAAATGAGAAGAAAAAGAAAGAGAGAACTGGAGCAAATAATAGATGATAACCTCGAATTCAATGGATTTATTAGGGGGCCGTGTGAGGGGTTGAGACCAAGGGCTGGGAAAGATGCAACGAGTACAAGTGGGATGGACAACATCCAAGAAGAGGTGGAGGAGAAACCGGTGACAAAGAAGGTGAAGAAACCTTCAGATGTTCCTGTTCCTCCCAAGAAAGAACACGCAAGGAAGTCTCACAGGTGCGACATAGAAAGCTGCCGGATGAGGTTTGCAGCAAAGGCGGAGCTAATGTTGCACAAGCGTAACCGCTGCCCACATGAAGGGTGTGGCAAGAGGTTCAGTTCCCACAAGTACGCAGTGAGTCACAGCCGTGTGCATGACGATGATAGGCCCCTCAAGTGCCCATGGAAAGGCTGCTCCATGTCGTTCAAGTGGGCATGGGCCCGCACTGAGCACATACGTGTGCACACCGGAGAGCGGCCATACCAGTGCAAGGTTGAGGGATGTGGCCTATTCTTCAGGTTTGTATCAGATTATAGCCGTCACCGCCGGAAAACAGGGCATTATGTGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003700 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008214 GO:0009653 GO:0009719 GO:0009725 GO:0009741 GO:0009826 GO:0009889 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0014070 GO:0016043 GO:0016049 GO:0016569 GO:0016570 GO:0016577 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0032451 GO:0032452 GO:0032502 GO:0032989 GO:0033169 GO:0033993 GO:0036211 GO:0040007 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045814 GO:0048519 GO:0048577 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048587 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0051276 GO:0060255 GO:0060560 GO:0065007 GO:0070076 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0140096 GO:0140110 GO:1901564 GO:1901700 GO:1903506 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

JmjC JmjN zf-C2H2

Protein Analysis

1595

Amino Acids

176.35

Weight (kDa)

5.84

Isoelectric Point (pI)

56.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
JmjN	PF02375	17 - 50	1.9e-15	jmjN domain
JmjC	PF02373	328 - 447	6.4e-34	JmjC domain, hydroxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0005507)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04240
fragaria_vesca	FvH4_7g19090 FvH4_7g19090 FvH4_7g19090 FvH4_7g19090 FvH4_7g19090 FvH4_7g19090 FvH4_7g19090 FvH4_7g19090 FvH4_7g19090
malus_domestica	MD01G1106000.v1.1 MD07G1172400.v1.1
prunus_persica	Prupe.2G211400_v2.0.a1 Prupe.2G211400_v2.0.a1
pyrus_communis	pycom01g13280 pycom07g16690
rosa_chinensis	RchiOBHm_Chr1g0362971
rosa_laevigata	RLG00000027605
rosa_multiflora	Rmu_sc0000174.1_g000009
rosa_roxburghii	Rroxscaffold_4G00293590
rosa_rugosa	Rorug01G0302900 Rorug01G0303000 Rorug01G0303100 Rorug01G0303200
rosa_samantha	Rh1AG312100 Rh1BG275600 Rh1CG292500 Rh1DG306300
rosa_wichuraiana	Rw1G027660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2307
AarI	CACCTGC	1 cut(s)	2086
AasI	GACNNNNNNGTC	1 cut(s)	1841
Acc36I	ACCTGC	2 cut(s)	1233, 2086
AccB1I	GGYRCC	6 cut(s)	46, 321, 1465, 2742, 3430, 3865
AccB7I	CCANNNNNTGG	3 cut(s)	331, 3238, 4310
AccBSI	CCGCTC	4 cut(s)	609, 1958, 2726, 4687
AccI	GTMKAC	2 cut(s)	1845, 1879
AccII	CGCG	1 cut(s)	1501
AclWI	GGATC	2 cut(s)	1072, 2081
AcoI	YGGCCR	3 cut(s)	59, 2529, 4688
AcuI	CTGAAG	6 cut(s)	2916, 3480, 3783, 3798, 4383, 4711
AcyI	GRCGYC	1 cut(s)	3431
AdeI	CACNNNGTG	3 cut(s)	1679, 2179, 3659
AfaI	GTAC	8 cut(s)	265, 868, 1383, 2752, 2921, 4006, 4330, 4562
AflIII	ACRYGT	3 cut(s)	758, 3697, 4669
AgeI	ACCGGT	1 cut(s)	4372
AjnI	CCWGG	8 cut(s)	571, 925, 1090, 1483, 1969, 2746, 2903, 3640
AleI	CACNNNNGTG	3 cut(s)	3824, 4578, 4668
Alw21I	GWGCWC	4 cut(s)	2175, 3618, 4665, 4677
Alw26I	GTCTC	7 cut(s)	1998, 2143, 3257, 3706, 3884, 4294, 4446
Alw44I	GTGCAC	1 cut(s)	4673
AlwI	GGATC	2 cut(s)	1072, 2081
AlwNI	CAGNNNCTG	2 cut(s)	533, 3821
Ama87I	CYCGRG	1 cut(s)	961
AoxI	GGCC	9 cut(s)	59, 2529, 2646, 3978, 4283, 4598, 4650, 4688, 4717
ApaI	GGGCCC	1 cut(s)	4654
ApaLI	GTGCAC	1 cut(s)	4673
AsiGI	ACCGGT	1 cut(s)	4372
Asp700I	GAANNNNTTC	7 cut(s)	1122, 2449, 3058, 3147, 3666, 3729, 4029
AspLEI	GCGC	1 cut(s)	3433
AsuC2I	CCSGG	2 cut(s)	962, 963
AvaI	CYCGRG	1 cut(s)	961
AvaII	GGWCC	6 cut(s)	1473, 2047, 2191, 2400, 3644, 4179
AxyI	CCTNAGG	1 cut(s)	1209
BaeGI	GKGCMC	4 cut(s)	2745, 4613, 4654, 4677
BaeI	ACNNNNGTAYC	2 cut(s)	2742, 2775
BanI	GGYRCC	6 cut(s)	46, 321, 1465, 2742, 3430, 3865
BanII	GRGCYC	3 cut(s)	3573, 3618, 4654
BarI	GAAGNNNNNNTAC	2 cut(s)	1365, 1397
BbsI	GAAGAC	4 cut(s)	46, 2400, 3468, 3562
Bbv12I	GWGCWC	4 cut(s)	2175, 3618, 4665, 4677
BceAI	ACGGC	4 cut(s)	2516, 4270, 4563, 4734
BciT130I	CCWGG	8 cut(s)	573, 927, 1092, 1485, 1971, 2748, 2905, 3642
BciVI	GTATCC	4 cut(s)	748, 2886, 2938, 3078
BclI	TGATCA	1 cut(s)	1750
BcnI	CCSGG	2 cut(s)	962, 963
BcoDI	GTCTC	7 cut(s)	1998, 2143, 3257, 3706, 3884, 4294, 4446
BfmI	CTRYAG	7 cut(s)	1377, 2268, 2718, 3624, 3675, 3822, 3858
BfoI	RGCGCY	1 cut(s)	3434
BfuAI	ACCTGC	2 cut(s)	1233, 2086
BfuI	GTATCC	4 cut(s)	748, 2886, 2938, 3078
BglII	AGATCT	2 cut(s)	2341, 2552
Bme18I	GGWCC	6 cut(s)	1473, 2047, 2191, 2400, 3644, 4179
BmeT110I	CYCGRG	1 cut(s)	961
BmrI	ACTGGG	3 cut(s)	15, 1671, 3534
BmsI	GCATC	8 cut(s)	779, 1705, 1934, 2027, 2339, 2795, 3056, 4309
BmuI	ACTGGG	3 cut(s)	15, 1671, 3534
BpiI	GAAGAC	4 cut(s)	46, 2400, 3468, 3562
BpmI	CTGGAG	4 cut(s)	774, 3621, 4098, 4256
BpuEI	CTTGAG	4 cut(s)	1944, 2189, 4168, 4589
BpuMI	CCSGG	2 cut(s)	962, 963
BsaAI	YACGTR	2 cut(s)	1385, 4670
BsaBI	GATNNNNATC	2 cut(s)	1701, 1749
BsaHI	GRCGYC	1 cut(s)	3431
BsaI	GGTCTC	2 cut(s)	2143, 4294
BsaWI	WCCGGW	2 cut(s)	4372, 4679
BsaXI	ACNNNNNCTCC	2 cut(s)	4484, 4514
Bse118I	RCCGGY	1 cut(s)	4372
Bse21I	CCTNAGG	1 cut(s)	1209
Bse3DI	GCAATG	4 cut(s)	152, 3129, 3358, 4132
Bse8I	GATNNNNATC	2 cut(s)	1701, 1749
BseBI	CCWGG	8 cut(s)	573, 927, 1092, 1485, 1971, 2748, 2905, 3642
BseJI	GATNNNNATC	2 cut(s)	1701, 1749
BseMI	GCAATG	4 cut(s)	152, 3129, 3358, 4132
BseMII	CTCAG	7 cut(s)	525, 1122, 1200, 1908, 2138, 3759, 4650
BseRI	GAGGAG	3 cut(s)	2297, 3179, 4379
BseSI	GKGCMC	4 cut(s)	2745, 4613, 4654, 4677
BseX3I	CGGCCG	1 cut(s)	59
BseYI	CCCAGC	1 cut(s)	4310
BsgI	GTGCAG	2 cut(s)	3410, 3848
Bsh1236I	CGCG	1 cut(s)	1501
Bsh1285I	CGRYCG	1 cut(s)	62
BshFI	GGCC	9 cut(s)	61, 2531, 2648, 3980, 4285, 4600, 4652, 4690, 4719
BshNI	GGYRCC	6 cut(s)	46, 321, 1465, 2742, 3430, 3865
BshTI	ACCGGT	1 cut(s)	4372
BsiEI	CGRYCG	1 cut(s)	62
BsiHKAI	GWGCWC	4 cut(s)	2175, 3618, 4665, 4677
BsiHKCI	CYCGRG	1 cut(s)	961
BsiSI	CCGG	8 cut(s)	58, 962, 2264, 2470, 4373, 4468, 4680, 4759
BslFI	GGGAC	6 cut(s)	612, 1459, 1847, 2496, 3214, 3708
BsmAI	GTCTC	7 cut(s)	1998, 2143, 3257, 3706, 3884, 4294, 4446
BsmFI	GGGAC	6 cut(s)	612, 1459, 1847, 2496, 3214, 3708
BsmI	GAATGC	1 cut(s)	736
BsnI	GGCC	9 cut(s)	61, 2531, 2648, 3980, 4285, 4600, 4652, 4690, 4719
Bso31I	GGTCTC	2 cut(s)	2143, 4294
BsoBI	CYCGRG	1 cut(s)	961
Bsp120I	GGGCCC	1 cut(s)	4650
Bsp1286I	GDGCHC	8 cut(s)	2175, 2745, 3573, 3618, 4613, 4654, 4665, 4677
Bsp143I	GATC	7 cut(s)	1027, 1064, 1510, 1750, 2086, 2341, 2552
Bsp19I	CCATGG	1 cut(s)	4613
BspANI	GGCC	9 cut(s)	61, 2531, 2648, 3980, 4285, 4600, 4652, 4690, 4719
BspCNI	CTCAG	7 cut(s)	526, 1123, 1201, 1909, 2139, 3758, 4651
BspFNI	CGCG	1 cut(s)	1501
BspHI	TCATGA	1 cut(s)	1030
BspMAI	CTGCAG	4 cut(s)	1381, 2272, 3628, 3679
BspMI	ACCTGC	2 cut(s)	1233, 2086
BspPI	GGATC	2 cut(s)	1072, 2081
BspQI	GCTCTTC	3 cut(s)	582, 616, 3787
BspT107I	GGYRCC	6 cut(s)	46, 321, 1465, 2742, 3430, 3865
BspTNI	GGTCTC	2 cut(s)	2143, 4294
BsrBI	CCGCTC	4 cut(s)	609, 1958, 2726, 4687
BsrDI	GCAATG	4 cut(s)	152, 3129, 3358, 4132
BsrFI	RCCGGY	1 cut(s)	4372
BssAI	RCCGGY	1 cut(s)	4372
BssMI	GATC	7 cut(s)	1027, 1064, 1510, 1750, 2086, 2341, 2552
BssNAI	GTATAC	1 cut(s)	1880
BssNI	GRCGYC	1 cut(s)	3431
BssT1I	CCWWGG	8 cut(s)	896, 1283, 1469, 2153, 3770, 3981, 4304, 4613
Bst1107I	GTATAC	1 cut(s)	1880
Bst2UI	CCWGG	8 cut(s)	573, 927, 1092, 1485, 1971, 2748, 2905, 3642
Bst6I	CTCTTC	6 cut(s)	582, 616, 626, 2037, 3787, 4350
BstACI	GRCGYC	1 cut(s)	3431
BstAPI	GCANNNNNTGC	2 cut(s)	2276, 2802
BstBAI	YACGTR	2 cut(s)	1385, 4670
BstC8I	GCNNGC	7 cut(s)	470, 1864, 2175, 2361, 2475, 3244, 4654
BstDEI	CTNAG	9 cut(s)	444, 534, 1131, 1209, 1917, 2147, 3745, 3875, 4659
BstDSI	CCRYGG	2 cut(s)	1309, 4613
BstEII	GGTNACC	1 cut(s)	490
BstENI	CCTNNNNNAGG	1 cut(s)	2751
BstFNI	CGCG	1 cut(s)	1501
BstH2I	RGCGCY	1 cut(s)	3434
BstHHI	GCGC	1 cut(s)	3433
BstKTI	GATC	7 cut(s)	1030, 1067, 1513, 1753, 2089, 2344, 2555
BstMAI	GTCTC	7 cut(s)	1998, 2143, 3257, 3706, 3884, 4294, 4446
BstMBI	GATC	7 cut(s)	1027, 1064, 1510, 1750, 2086, 2341, 2552
BstMCI	CGRYCG	1 cut(s)	62
BstNI	CCWGG	8 cut(s)	573, 927, 1092, 1485, 1971, 2748, 2905, 3642
BstNSI	RCATGY	7 cut(s)	472, 762, 997, 1866, 2224, 2477, 3701
BstPI	GGTNACC	1 cut(s)	490
BstSFI	CTRYAG	7 cut(s)	1377, 2268, 2718, 3624, 3675, 3822, 3858
BstSLI	GKGCMC	4 cut(s)	2745, 4613, 4654, 4677
BstSNI	TACGTA	1 cut(s)	1385
BstUI	CGCG	1 cut(s)	1501
BstV2I	GAAGAC	4 cut(s)	46, 2400, 3468, 3562
BstX2I	RGATCY	4 cut(s)	1064, 2086, 2341, 2552
BstYI	RGATCY	4 cut(s)	1064, 2086, 2341, 2552
BstZ17I	GTATAC	1 cut(s)	1880
BstZI	CGGCCG	1 cut(s)	59
Bsu36I	CCTNAGG	1 cut(s)	1209
BsuI	GTATCC	4 cut(s)	748, 2886, 2938, 3078
BsuRI	GGCC	9 cut(s)	61, 2531, 2648, 3980, 4285, 4600, 4652, 4690, 4719
BtgI	CCRYGG	2 cut(s)	1309, 4613
BtsI	GCAGTG	3 cut(s)	2207, 2955, 4572
BveI	ACCTGC	2 cut(s)	1233, 2086
Cac8I	GCNNGC	7 cut(s)	470, 1864, 2175, 2361, 2475, 3244, 4654
CaiI	CAGNNNCTG	2 cut(s)	533, 3821
CciI	TCATGA	1 cut(s)	1030
CfoI	GCGC	1 cut(s)	3433
Cfr10I	RCCGGY	1 cut(s)	4372
Cfr9I	CCCGGG	1 cut(s)	961
CseI	GACGC	2 cut(s)	73, 2841
CsiI	ACCWGGT	2 cut(s)	925, 1483
Csp6I	GTAC	8 cut(s)	264, 867, 1382, 2751, 2920, 4005, 4329, 4561
CspAI	ACCGGT	1 cut(s)	4372
CviQI	GTAC	8 cut(s)	264, 867, 1382, 2751, 2920, 4005, 4329, 4561
DdeI	CTNAG	9 cut(s)	444, 534, 1131, 1209, 1917, 2147, 3745, 3875, 4659
DinI	GGCGCC	1 cut(s)	3432
DpnI	GATC	7 cut(s)	1029, 1066, 1512, 1752, 2088, 2343, 2554
DpnII	GATC	7 cut(s)	1027, 1064, 1510, 1750, 2086, 2341, 2552
DraIII	CACNNNGTG	3 cut(s)	1679, 2179, 3659
DrdI	GACNNNNNNGTC	1 cut(s)	1841
DseDI	GACNNNNNNGTC	1 cut(s)	1841
EaeI	YGGCCR	3 cut(s)	59, 2529, 4688
EagI	CGGCCG	1 cut(s)	59
Eam1104I	CTCTTC	6 cut(s)	582, 616, 626, 2037, 3787, 4350
EarI	CTCTTC	6 cut(s)	582, 616, 626, 2037, 3787, 4350
EciI	GGCGGA	4 cut(s)	366, 637, 643, 4505
Ecl136II	GAGCTC	1 cut(s)	3616
EclXI	CGGCCG	1 cut(s)	59
Eco105I	TACGTA	1 cut(s)	1385
Eco130I	CCWWGG	8 cut(s)	896, 1283, 1469, 2153, 3770, 3981, 4304, 4613
Eco24I	GRGCYC	3 cut(s)	3573, 3618, 4654
Eco31I	GGTCTC	2 cut(s)	2143, 4294
Eco32I	GATATC	2 cut(s)	958, 2911
Eco47I	GGWCC	6 cut(s)	1473, 2047, 2191, 2400, 3644, 4179
Eco52I	CGGCCG	1 cut(s)	59
Eco53kI	GAGCTC	1 cut(s)	3616
Eco57I	CTGAAG	6 cut(s)	2916, 3480, 3783, 3798, 4383, 4711
Eco81I	CCTNAGG	1 cut(s)	1209
Eco88I	CYCGRG	1 cut(s)	961
Eco91I	GGTNACC	1 cut(s)	490
EcoICRI	GAGCTC	1 cut(s)	3616
EcoNI	CCTNNNNNAGG	1 cut(s)	2751
EcoO109I	RGGNCCY	5 cut(s)	1473, 2047, 2646, 4179, 4599
EcoO65I	GGTNACC	1 cut(s)	490
EcoRI	GAATTC	4 cut(s)	74, 2449, 2815, 4262
EcoRII	CCWGG	8 cut(s)	571, 925, 1090, 1483, 1969, 2746, 2903, 3640
EcoRV	GATATC	2 cut(s)	958, 2911
EcoT14I	CCWWGG	8 cut(s)	896, 1283, 1469, 2153, 3770, 3981, 4304, 4613
EcoT22I	ATGCAT	4 cut(s)	1105, 2020, 2332, 2479
EcoT38I	GRGCYC	3 cut(s)	3573, 3618, 4654
EgeI	GGCGCC	1 cut(s)	3432
EheI	GGCGCC	1 cut(s)	3432
ErhI	CCWWGG	8 cut(s)	896, 1283, 1469, 2153, 3770, 3981, 4304, 4613
FalI	AAGNNNNNCTT	2 cut(s)	4127, 4159
FaqI	GGGAC	6 cut(s)	612, 1459, 1847, 2496, 3214, 3708
FauI	CCCGC	2 cut(s)	2719, 4661
FauNDI	CATATG	1 cut(s)	741
FbaI	TGATCA	1 cut(s)	1750
FblI	GTMKAC	2 cut(s)	1845, 1879
FriOI	GRGCYC	3 cut(s)	3573, 3618, 4654
GlaI	GCGC	1 cut(s)	3432
GsaI	CCCAGC	1 cut(s)	4314
GsuI	CTGGAG	4 cut(s)	774, 3621, 4098, 4256
HaeII	RGCGCY	1 cut(s)	3434
HaeIII	GGCC	9 cut(s)	61, 2531, 2648, 3980, 4285, 4600, 4652, 4690, 4719
HapII	CCGG	8 cut(s)	58, 962, 2264, 2470, 4373, 4468, 4680, 4759
HgaI	GACGC	2 cut(s)	73, 2841
HhaI	GCGC	1 cut(s)	3433
Hin1I	GRCGYC	1 cut(s)	3431
Hin6I	GCGC	1 cut(s)	3431
HinP1I	GCGC	1 cut(s)	3431
HincII	GTYRAC	1 cut(s)	1846
HindII	GTYRAC	1 cut(s)	1846
HindIII	AAGCTT	3 cut(s)	881, 2567, 2699
HpaII	CCGG	8 cut(s)	58, 962, 2264, 2470, 4373, 4468, 4680, 4759
Hpy166II	GTNNAC	8 cut(s)	923, 932, 985, 1846, 1880, 2191, 2591, 4675
Hpy8I	GTNNAC	8 cut(s)	923, 932, 985, 1846, 1880, 2191, 2591, 4675
Hpy99I	CGWCG	1 cut(s)	67
HpyCH4IV	ACGT	5 cut(s)	919, 1020, 1384, 2377, 4669
HpyF3I	CTNAG	9 cut(s)	444, 534, 1131, 1209, 1917, 2147, 3745, 3875, 4659
HpySE526I	ACGT	5 cut(s)	919, 1020, 1384, 2377, 4669
Hsp92I	GRCGYC	1 cut(s)	3431
HspAI	GCGC	1 cut(s)	3431
KasI	GGCGCC	1 cut(s)	3430
Ksp22I	TGATCA	1 cut(s)	1750
Kzo9I	GATC	7 cut(s)	1027, 1064, 1510, 1750, 2086, 2341, 2552
LguI	GCTCTTC	3 cut(s)	582, 616, 3787
LweI	GCATC	8 cut(s)	779, 1705, 1934, 2027, 2339, 2795, 3056, 4309
MabI	ACCWGGT	2 cut(s)	925, 1483
MaeII	ACGT	5 cut(s)	919, 1020, 1384, 2377, 4669
MalI	GATC	7 cut(s)	1029, 1066, 1512, 1752, 2088, 2343, 2554
MbiI	CCGCTC	4 cut(s)	609, 1958, 2726, 4687
MboI	GATC	7 cut(s)	1027, 1064, 1510, 1750, 2086, 2341, 2552
MfeI	CAATTG	2 cut(s)	2274, 3202
MflI	RGATCY	4 cut(s)	1064, 2086, 2341, 2552
MhlI	GDGCHC	8 cut(s)	2175, 2745, 3573, 3618, 4613, 4654, 4665, 4677
Mly113I	GGCGCC	1 cut(s)	3431
MlyI	GAGTC	4 cut(s)	1841, 3281, 3458, 4579
MmeI	TCCRAC	2 cut(s)	857, 2105
Mph1103I	ATGCAT	4 cut(s)	1105, 2020, 2332, 2479
MroXI	GAANNNNTTC	7 cut(s)	1122, 2449, 3058, 3147, 3666, 3729, 4029
MspA1I	CMGCKG	5 cut(s)	1166, 1429, 3137, 3969, 4518
MspI	CCGG	8 cut(s)	58, 962, 2264, 2470, 4373, 4468, 4680, 4759
MunI	CAATTG	2 cut(s)	2274, 3202
Mva1269I	GAATGC	1 cut(s)	736
MvaI	CCWGG	8 cut(s)	573, 927, 1092, 1485, 1971, 2748, 2905, 3642
MvnI	CGCG	1 cut(s)	1501
NarI	GGCGCC	1 cut(s)	3431
NciI	CCSGG	2 cut(s)	962, 963
NcoI	CCATGG	1 cut(s)	4613
NdeI	CATATG	1 cut(s)	741
NdeII	GATC	7 cut(s)	1027, 1064, 1510, 1750, 2086, 2341, 2552
NmeAIII	GCCGAG	1 cut(s)	3286
NmuCI	GTSAC	8 cut(s)	198, 1273, 3197, 3808, 3943, 4375, 4571, 4751
NsiI	ATGCAT	4 cut(s)	1105, 2020, 2332, 2479
NspI	RCATGY	7 cut(s)	472, 762, 997, 1866, 2224, 2477, 3701
OliI	CACNNNNGTG	3 cut(s)	3824, 4578, 4668
PaeI	GCATGC	3 cut(s)	472, 1866, 2477
PagI	TCATGA	1 cut(s)	1030
PaqCI	CACCTGC	1 cut(s)	2086
PciI	ACATGT	2 cut(s)	758, 3697
PciSI	GCTCTTC	3 cut(s)	582, 616, 3787
PctI	GAATGC	1 cut(s)	736
PdmI	GAANNNNTTC	7 cut(s)	1122, 2449, 3058, 3147, 3666, 3729, 4029
PfeI	GAWTC	9 cut(s)	373, 1231, 1302, 1607, 1664, 1702, 2843, 3365, 3755
PflFI	GACNNNGTC	1 cut(s)	1447
PflMI	CCANNNNNTGG	3 cut(s)	331, 3238, 4310
PinAI	ACCGGT	1 cut(s)	4372
PleI	GAGTC	4 cut(s)	1841, 3281, 3458, 4578
PluTI	GGCGCC	1 cut(s)	3434
PpsI	GAGTC	4 cut(s)	1841, 3281, 3458, 4578
Ppu21I	YACGTR	2 cut(s)	1385, 4670
PpuMI	RGGWCCY	3 cut(s)	1473, 2047, 4179
PscI	ACATGT	2 cut(s)	758, 3697
PsiI	TTATAA	1 cut(s)	2307
Psp124BI	GAGCTC	1 cut(s)	3618
Psp5II	RGGWCCY	3 cut(s)	1473, 2047, 4179
Psp6I	CCWGG	8 cut(s)	571, 925, 1090, 1483, 1969, 2746, 2903, 3640
PspEI	GGTNACC	1 cut(s)	490
PspFI	CCCAGC	1 cut(s)	4310
PspGI	CCWGG	8 cut(s)	571, 925, 1090, 1483, 1969, 2746, 2903, 3640
PspOMI	GGGCCC	1 cut(s)	4650
PspPPI	RGGWCCY	3 cut(s)	1473, 2047, 4179
PstI	CTGCAG	4 cut(s)	1381, 2272, 3628, 3679
PstNI	CAGNNNCTG	2 cut(s)	533, 3821
PsuI	RGATCY	4 cut(s)	1064, 2086, 2341, 2552
PsyI	GACNNNGTC	1 cut(s)	1447
PvuII	CAGCTG	3 cut(s)	1166, 1429, 3137
RsaI	GTAC	8 cut(s)	265, 868, 1383, 2752, 2921, 4006, 4330, 4562
RsaNI	GTAC	8 cut(s)	264, 867, 1382, 2751, 2920, 4005, 4329, 4561
SacI	GAGCTC	1 cut(s)	3618
SalI	GTCGAC	1 cut(s)	1844
SapI	GCTCTTC	3 cut(s)	582, 616, 3787
Sau3AI	GATC	7 cut(s)	1027, 1064, 1510, 1750, 2086, 2341, 2552
SchI	GAGTC	4 cut(s)	1841, 3281, 3458, 4579
SduI	GDGCHC	8 cut(s)	2175, 2745, 3573, 3618, 4613, 4654, 4665, 4677
SexAI	ACCWGGT	2 cut(s)	925, 1483
SfaNI	GCATC	8 cut(s)	779, 1705, 1934, 2027, 2339, 2795, 3056, 4309
SfcI	CTRYAG	7 cut(s)	1377, 2268, 2718, 3624, 3675, 3822, 3858
SfoI	GGCGCC	1 cut(s)	3432
SinI	GGWCC	6 cut(s)	1473, 2047, 2191, 2400, 3644, 4179
SmaI	CCCGGG	1 cut(s)	963
SmlI	CTYRAG	4 cut(s)	1959, 2168, 4183, 4604
SmoI	CTYRAG	4 cut(s)	1959, 2168, 4183, 4604
SnaBI	TACGTA	1 cut(s)	1385
SphI	GCATGC	3 cut(s)	472, 1866, 2477
SspDI	GGCGCC	1 cut(s)	3430
SspI	AATATT	3 cut(s)	798, 2681, 3058
SstI	GAGCTC	1 cut(s)	3618
StyI	CCWWGG	8 cut(s)	896, 1283, 1469, 2153, 3770, 3981, 4304, 4613
TaiI	ACGT	5 cut(s)	922, 1023, 1387, 2380, 4672
TatI	WGTACW	2 cut(s)	2919, 4328
TauI	GCSGC	1 cut(s)	4690
TfiI	GAWTC	9 cut(s)	373, 1231, 1302, 1607, 1664, 1702, 2843, 3365, 3755
TseFI	GTSAC	8 cut(s)	198, 1273, 3197, 3808, 3943, 4375, 4571, 4751
Tsp45I	GTSAC	8 cut(s)	198, 1273, 3197, 3808, 3943, 4375, 4571, 4751
TspGWI	ACGGA	1 cut(s)	1657
TspMI	CCCGGG	1 cut(s)	961
Tth111I	GACNNNGTC	1 cut(s)	1447
Van91I	CCANNNNNTGG	3 cut(s)	331, 3238, 4310
VneI	GTGCAC	1 cut(s)	4673
VpaK11BI	GGWCC	6 cut(s)	1473, 2047, 2191, 2400, 3644, 4179
XagI	CCTNNNNNAGG	1 cut(s)	2751
XbaI	TCTAGA	1 cut(s)	4085
XceI	RCATGY	7 cut(s)	472, 762, 997, 1866, 2224, 2477, 3701
XcmI	CCANNNNNNNNNTGG	4 cut(s)	1730, 3239, 3848, 3913
XmaI	CCCGGG	1 cut(s)	961
XmiI	GTMKAC	2 cut(s)	1845, 1879
XmnI	GAANNNNTTC	7 cut(s)	1122, 2449, 3058, 3147, 3666, 3729, 4029
Zsp2I	ATGCAT	4 cut(s)	1105, 2020, 2332, 2479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.