Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000174.1

Orthogroup ID

OG0005507

Physical Location & Seq

Genomic Coordinates Forward (+)

32564 .. 40153

Gene Structure 7590 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000174.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4821 bp

atgggtgatgttaagataccaaattggcttaaagggctgccattggcgcccgagtttcatccaacccataccgaatttgctgacccaattgcttatatatcgaaaattgagaaggaagcctgtgaatttggtatttgcaagattatcccaccattgccgaaaccttccaagagatatgtttttagtaacttgaataagtcacttgctaagcggcccgaattgggttctgatttgatccctgggaatgatggtgatgctgtgaaagtgggttctggggatggtagtaatgatggggaggttagggcagtgtttaccactaggcaccaagaattggggcagactgtgaaaagagcgaaaggggcgggtgttcaggatccgccgccatcgggtgttgataagcaagtgtggcaaagtggggaagtttatactttagagcagtttgagtccaagtccagagcttttgcaaggagcattttaggtacaattagagatgtatctccattggttatagaggcaatgttttggaaggcagcttctgagaagccgatatatattgagtatgccaatgatgtgcctgggtctgcttttgaagaaccggagggtctgttgtgctattcacgtaggcggaggaggaagaggaattcctaccacagaagtggaccaaactctgacagcaagaaaagtgaaatgattagcagttgtgaaagaaagtcccaaaatggtgaagttgaggatgcttcccctaaaaatgtttcacttacatccgtggaggtacccaaatcatctgctttgccgggaatagtgtcaacagatgaaacttctcaatcttctaggaaaaaaagtcaaaattcttcttgtgacgtggaaggtactgctggttggaagctttcaaacagtccatggaacttacaagtcattgcacgctcacctggttcacttactcgtttcatgccggatgatatcccaggtgttacttctcctatggtttacatcggcatgttgttcagctggtttgcttggcacgttgaagatcatgagcttcacagcatgaattttctgcacaatggatctgcaaagacttggtattctgttcctggagattatgcatttgcttttgaggaacttattcgcactgaggcatatggtggtactgctgaccgtctggctgctctctcactattgggtaataaaacaactttaatgtcacctgaggtagttatcgcatcgggaattccgtgttgcaggttaatacagaatcctggtgaatttgttgtgacttttccaagggcttaccatgtaggattcagtcacggtttcaattgtggagaagctgctaactttggaacaccacaatggcttaaagtggctaaagaagctgcagtacgtagagctgctatgaattatcttcctatgctctcccatcaacagctgctatacctctcgactatgtcttttgtttcaagagtgccgaagtccctactaccaggtgtgcggagttcccgtatgagagatagacaaaaggaagacagagagctatcagtaaagaaggcttttattgaagatattttaaatgagaacgatgtgttatctgctcttcttgggaaagaatcaagttgccgtgcagtattatggaatcctgatttacttccaaatgcaagtaaagagtcttccatacccactgcaagtgctcctgttgatacgaattcaaaagaaaatgctacggatactcagggtggaaatagtactaatgatcagaactttctggtagatgagatgagtttgtacatggaaaatcttaacgacttatatttgggcagtgatgatttgtctgatgacttccaagttgactcaggaacattggcatgtgtggcatgtgggatacttgggtttccatttatgtctgtggtgcaaccatctgagaaggcatcaatggaacttcagcctgaatgtattttggctgaagaattgcctggagtttcaggcaattctcatatctctccagagcatagcgaatctttcaaaggctgtgctacagaggataatgcttttccacatgcaagggatcccgtcttaccttgcacaacaaggtttaacaactgttggaatactgttgataaatttctgagaccacggagtttctgtcttgaacatgctgttgaaactttggagctgttgcagtgtaaaggtggagcaaacatgcttgtgatttgccattctgactatcagaaaataaaggctcctgctgcagccattgcagaagaaattggttgcccttttaactataacgaggttccattggacattgcctcaaatgaagatttgaacttgatagatcttgctgtcgatgatggatgtgatgaatgtggagaagattggacctcaaagttgggtatcaacctacggtactgtgtcaaggtcagaaaaagttcttcctcgaagcgagtccagcatgcattggcattgggtgaagtgttctcgaaacaaagttgcagctcagaatttctggccgttaactggaaatctagaagatctcggacgaagaaggtttatctagatgccccttacaaacaatgtgacagcattgacaaaaagaaggaagaagtggtggaggcaaagtcagcagatgccacctcttttaaaagggaagcaaaaataattcaatattcaagaaggaataagcgaaaaccaagtacttctacaggagcaggtagggttgttgagcaccctggtacttctgaagagcttgataaacataacaggagggcatcagataatagcatttacaacaatgggaagtccaccagcatatgtgcaaggttggactcatttacatcagatagtactgaaatgcatcctgatgtccagatgcttgaagccaccagggatatctgtttggactctactctttcacaagctgcagatacagttgccttaacagctggaagtgctgacgcacagattgaaaatcgcagtttggaagagaggaacatgaacggtggaggttgtaatctagcagtaagcgagtctggtatgcaagatgagatcaagatccttaaagaagccaggcaaaacaactcaattattccacttgtcattgcacgtgatgaaaggtctgaaaagcatagaggggaacaggaaaatgaaaaattgaacaaaaatgatgacaattgtaatctggtgtctgaagggcagtcccaactttggtctcaggaggatgttcttatgaatgtggtttctgttttcaccaaatcaacaaacttatctgctgctgactcaattgtgacaagttctgaggaacagatagtcaatgcagtcattgagaaatcttgcgtgaatagtgaagtttgtgaatctatgactttgggcgatgaagtgcagcaagaaatccaaactactaacagaagtaacgacaaggcaccggtttcatgtagttccacgctgttgaatgatccaacctttgctgcagctgaatgtcaggttgaatttgaaagagagactcatattgtagaagaatttagcaatgttgtttcttcagaattcaaaccagaagaagatattgagattccgaaaggaagatatgcgaaacccagtttaagtcctaccagacgagtcggtcaacactctcctgcttctacagacagattgtctggagttgcaaaggcgttctgtgcttcagcagattttcagccaggcccaacttcacatggtgaagaatttcaggcagcagatagaactagtgagggggaatacatctctacttcaatgatagaggaagaaactcatccctcgtcattggaagaatcttctgaagttccaagaggaagctctttggaggaaggcacgagcagtggtgtgacttcagccactctagttcagcaagatgcccaaactacaaatgcagctgtggaagcacctagtcataattttgttgtacgaggagaaaatcaacctatacctgtctcggttgaagatgaagttcccagagtgagctgtgcaacagatgtgaccttggatgataaagaacggtggacaaactcgtacagtaataaggaactcattgctagtcatgatacttcaaaatgcgagccgtctcgtgttacaattaaaacatactttagagttaaaagagggagccgtgctgctcaagaattgcacaacggtactgaagtttgtatatcacaacatgatagagagctgggaaacattgagccttccattttagaccccagaccaagtcctgaaattggaagtaaaagaaagagaggagtggggcagaaaatggatggcaactccaacttcaatggatatattagggggccatgtgaaggtttgagaccaagggctgcgaaggatgcaacagttagtaggatagacatccacaaccaggttgaagagcagccagtggcaaagaaggtgaagagaccttcagatgttcctgttcctcccaaggataagaagaaagagcaagtaaggaagccccacagctgcaacctagggggctgtagcatgagttttcagacaaaggaggagttaatggtgcacaagcgtaaccgctgcccacatgaagggtgtggtaagaagttcagttgccacaagtatgcaatggttcacagccgtgtgcatgatagtgctaggcccttcaagtgcccatggaagggttgctccatgtcattcaagtgggcatgggcccagactgagcatatacgagtgcacactggagaaaaaccatacaagtgcaaggtggacggctgtggcctctctttcaggtttgtatcagattttagccgtcacagacggaaaacagggcattatgtgagctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003700 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008214 GO:0009653 GO:0009719 GO:0009725 GO:0009741 GO:0009826 GO:0009889 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0014070 GO:0016043 GO:0016049 GO:0016569 GO:0016570 GO:0016577 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0032451 GO:0032452 GO:0032502 GO:0032989 GO:0033169 GO:0033993 GO:0036211 GO:0040007 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045814 GO:0048519 GO:0048577 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048587 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0051276 GO:0060255 GO:0060560 GO:0065007 GO:0070076 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0140096 GO:0140110 GO:1901564 GO:1901700 GO:1903506 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

JmjC JmjN zf-C2H2

Protein Analysis

1606

Amino Acids

177.35

Weight (kDa)

5.89

Isoelectric Point (pI)

53.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005507)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04240
fragaria_vesca	FvH4_7g19090 FvH4_7g19090 FvH4_7g19090 FvH4_7g19090 FvH4_7g19090 FvH4_7g19090 FvH4_7g19090 FvH4_7g19090 FvH4_7g19090
malus_domestica	MD01G1106000.v1.1 MD07G1172400.v1.1
prunus_persica	Prupe.2G211400_v2.0.a1 Prupe.2G211400_v2.0.a1
pyrus_communis	pycom01g13280 pycom07g16690
rosa_chinensis	RchiOBHm_Chr1g0362971
rosa_laevigata	RLG00000027605
rosa_multiflora	Rmu_sc0000174.1_g000009
rosa_roxburghii	Rroxscaffold_4G00293590
rosa_rugosa	Rorug01G0302900 Rorug01G0303000 Rorug01G0303100 Rorug01G0303200
rosa_samantha	Rh1AG312100 Rh1BG275600 Rh1CG292500 Rh1DG306300
rosa_wichuraiana	Rw1G027660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	3612
Acc36I	ACCTGC	2 cut(s)	1233, 2696
Acc65I	GGTACC	1 cut(s)	772
AccB1I	GGYRCC	4 cut(s)	46, 321, 772, 3415
AccB7I	CCANNNNNTGG	1 cut(s)	331
AciI	CCGC	7 cut(s)	211, 362, 377, 380, 625, 1492, 4552
AclWI	GGATC	8 cut(s)	229, 368, 381, 1075, 2057, 2070, 3043, 3443
AcoI	YGGCCR	1 cut(s)	2505
AcvI	CACGTG	1 cut(s)	3101
AcyI	GRCGYC	1 cut(s)	47
AdeI	CACNNNGTG	1 cut(s)	3707
AgeI	ACCGGT	1 cut(s)	3418
AhdI	GACNNNNNGTC	1 cut(s)	3643
AhlI	ACTAGT	1 cut(s)	3734
AjiI	CACGTC	1 cut(s)	862
AleI	CACNNNNGTG	2 cut(s)	654, 4614
Alw21I	GWGCWC	4 cut(s)	1690, 2724, 4542, 4713
Alw26I	GTCTC	7 cut(s)	2119, 3210, 3488, 3964, 4095, 4327, 4414
Alw44I	GTGCAC	2 cut(s)	4538, 4709
AlwI	GGATC	8 cut(s)	229, 368, 381, 1075, 2057, 2070, 3043, 3443
AlwNI	CAGNNNCTG	1 cut(s)	536
Ama87I	CYCGRG	1 cut(s)	50
AoxI	GGCC	7 cut(s)	212, 2505, 3691, 4316, 4634, 4686, 4753
ApaI	GGGCCC	1 cut(s)	4690
ApaLI	GTGCAC	2 cut(s)	4538, 4709
AsiGI	ACCGGT	1 cut(s)	3418
Asp700I	GAANNNNTTC	3 cut(s)	1125, 2425, 3714
Asp718I	GGTACC	1 cut(s)	772
AspA2I	CCTAGG	1 cut(s)	4492
AspLEI	GCGC	1 cut(s)	49
AspS9I	GGNCC	8 cut(s)	213, 659, 2376, 3692, 4316, 4635, 4686, 4687
AsuC2I	CCSGG	1 cut(s)	795
AvaI	CYCGRG	1 cut(s)	50
AvaII	GGWCC	2 cut(s)	659, 2376
AvrII	CCTAGG	1 cut(s)	4492
AxyI	CCTNAGG	1 cut(s)	1209
BaeGI	GKGCMC	4 cut(s)	4542, 4649, 4690, 4713
BaeI	ACNNNNGTAYC	4 cut(s)	1871, 1904, 4152, 4185
BamHI	GGATCC	2 cut(s)	373, 2062
BanI	GGYRCC	4 cut(s)	46, 321, 772, 3415
BanII	GRGCYC	1 cut(s)	4690
BarI	GAAGNNNNNNTAC	4 cut(s)	1365, 1397, 1651, 1683
BauI	CACGAG	2 cut(s)	3841, 4092
BbrPI	CACGTG	1 cut(s)	3101
BbsI	GAAGAC	2 cut(s)	1530, 1659
Bbv12I	GWGCWC	4 cut(s)	1690, 2724, 4542, 4713
BccI	CCATC	8 cut(s)	242, 272, 284, 391, 1428, 1921, 2342, 4277
BceAI	ACGGC	7 cut(s)	1602, 2492, 4072, 4119, 4599, 4762, 4770
BciVI	GTATCC	2 cut(s)	1717, 1872
BclI	TGATCA	1 cut(s)	1750
BcnI	CCSGG	1 cut(s)	795
BcoDI	GTCTC	7 cut(s)	2119, 3210, 3488, 3964, 4095, 4327, 4414
BcuI	ACTAGT	1 cut(s)	3734
BfmI	CTRYAG	8 cut(s)	1377, 2031, 2244, 2697, 2916, 3462, 3633, 4501
BfoI	RGCGCY	1 cut(s)	50
BfuAI	ACCTGC	2 cut(s)	1233, 2696
BfuI	GTATCC	2 cut(s)	1717, 1872
BglII	AGATCT	2 cut(s)	2332, 2528
BlnI	CCTAGG	1 cut(s)	4492
BlpI	GCTNAGC	1 cut(s)	207
BmcAI	AGTACT	3 cut(s)	1744, 2692, 2842
Bme18I	GGWCC	2 cut(s)	659, 2376
BmeRI	GACNNNNNGTC	1 cut(s)	3643
BmeT110I	CYCGRG	1 cut(s)	50
BmgBI	CACGTC	1 cut(s)	862
BmgT120I	GGNCC	8 cut(s)	213, 659, 2376, 3692, 4316, 4635, 4686, 4687
BmrI	ACTGGG	1 cut(s)	3582
BmuI	ACTGGG	1 cut(s)	3582
BpiI	GAAGAC	2 cut(s)	1530, 1659
BpmI	CTGGAG	5 cut(s)	1116, 1983, 1992, 3669, 4737
Bpu1102I	GCTNAGC	1 cut(s)	207
BpuEI	CTTGAG	1 cut(s)	4128
BpuMI	CCSGG	1 cut(s)	795
BsaAI	YACGTR	3 cut(s)	620, 1385, 3101
BsaBI	GATNNNNATC	2 cut(s)	3047, 4373
BsaHI	GRCGYC	1 cut(s)	47
BsaI	GGTCTC	4 cut(s)	2119, 3210, 4327, 4414
BsaWI	WCCGGW	2 cut(s)	595, 3418
BsaXI	ACNNNNNCTCC	8 cut(s)	590, 620, 1486, 1516, 2125, 2155, 2600, 2630
Bse118I	RCCGGY	1 cut(s)	3418
Bse1I	ACTGG	4 cut(s)	2519, 3588, 4400, 4720
Bse21I	CCTNAGG	1 cut(s)	1209
Bse3DI	GCAATG	9 cut(s)	152, 522, 915, 2250, 2301, 3093, 3526, 4056, 4608
Bse8I	GATNNNNATC	2 cut(s)	3047, 4373
BseJI	GATNNNNATC	2 cut(s)	3047, 4373
BseMI	GCAATG	9 cut(s)	152, 522, 915, 2250, 2301, 3093, 3526, 4056, 4608
BseNI	ACTGG	4 cut(s)	2519, 3588, 4400, 4720
BseRI	GAGGAG	4 cut(s)	643, 3951, 4278, 4541
BseSI	GKGCMC	4 cut(s)	4542, 4649, 4690, 4713
BseYI	CCCAGC	1 cut(s)	4195
BsgI	GTGCAG	3 cut(s)	1043, 1641, 3395
BshFI	GGCC	7 cut(s)	214, 2507, 3693, 4318, 4636, 4688, 4755
BshNI	GGYRCC	4 cut(s)	46, 321, 772, 3415
BshTI	ACCGGT	1 cut(s)	3418
BsiHKAI	GWGCWC	4 cut(s)	1690, 2724, 4542, 4713
BsiHKCI	CYCGRG	1 cut(s)	50
BsiSI	CCGG	4 cut(s)	596, 794, 953, 3419
BslFI	GGGAC	3 cut(s)	697, 1459, 3178
BsmAI	GTCTC	7 cut(s)	2119, 3210, 3488, 3964, 4095, 4327, 4414
BsmBI	CGTCTC	1 cut(s)	4095
BsmFI	GGGAC	3 cut(s)	697, 1459, 3178
BsnI	GGCC	7 cut(s)	214, 2507, 3693, 4318, 4636, 4688, 4755
Bso31I	GGTCTC	4 cut(s)	2119, 3210, 4327, 4414
BsoBI	CYCGRG	1 cut(s)	50
Bsp120I	GGGCCC	1 cut(s)	4686
Bsp1286I	GDGCHC	6 cut(s)	1690, 2724, 4542, 4649, 4690, 4713
Bsp1407I	TGTACA	1 cut(s)	1782
Bsp1720I	GCTNAGC	1 cut(s)	207
Bsp19I	CCATGG	2 cut(s)	899, 4649
BspACI	CCGC	7 cut(s)	211, 362, 377, 380, 625, 1492, 4552
BspANI	GGCC	7 cut(s)	214, 2507, 3693, 4318, 4636, 4688, 4755
BspHI	TCATGA	2 cut(s)	1033, 4066
BspMAI	CTGCAG	4 cut(s)	1381, 2248, 2920, 3466
BspMI	ACCTGC	2 cut(s)	1233, 2696
BspPI	GGATC	8 cut(s)	229, 368, 381, 1075, 2057, 2070, 3043, 3443
BspQI	GCTCTTC	3 cut(s)	1599, 2733, 4386
BspT107I	GGYRCC	4 cut(s)	46, 321, 772, 3415
BspTNI	GGTCTC	4 cut(s)	2119, 3210, 4327, 4414
BsrDI	GCAATG	9 cut(s)	152, 522, 915, 2250, 2301, 3093, 3526, 4056, 4608
BsrFI	RCCGGY	1 cut(s)	3418
BsrGI	TGTACA	1 cut(s)	1782
BsrI	ACTGG	4 cut(s)	2519, 3588, 4400, 4720
BssAI	RCCGGY	1 cut(s)	3418
BssNI	GRCGYC	1 cut(s)	47
BssSI	CACGAG	2 cut(s)	3841, 4092
BssT1I	CCWWGG	7 cut(s)	899, 1283, 4008, 4337, 4446, 4492, 4649
Bst2BI	CACGAG	2 cut(s)	3841, 4092
Bst6I	CTCTTC	6 cut(s)	629, 1599, 2733, 2973, 4386, 4412
BstACI	GRCGYC	1 cut(s)	47
BstAPI	GCANNNNNTGC	1 cut(s)	2252
BstAUI	TGTACA	1 cut(s)	1782
BstBAI	YACGTR	3 cut(s)	620, 1385, 3101
BstC8I	GCNNGC	3 cut(s)	922, 2451, 4085
BstDSI	CCRYGG	4 cut(s)	765, 899, 2129, 4649
BstH2I	RGCGCY	1 cut(s)	50
BstHHI	GCGC	1 cut(s)	49
BstMAI	GTCTC	7 cut(s)	2119, 3210, 3488, 3964, 4095, 4327, 4414
BstNSI	RCATGY	7 cut(s)	1000, 1866, 1875, 2057, 2153, 2200, 2453
BstSFI	CTRYAG	8 cut(s)	1377, 2031, 2244, 2697, 2916, 3462, 3633, 4501
BstSLI	GKGCMC	4 cut(s)	4542, 4649, 4690, 4713
BstSNI	TACGTA	1 cut(s)	1385
BstV2I	GAAGAC	2 cut(s)	1530, 1659
BstX2I	RGATCY	6 cut(s)	373, 1067, 2062, 2332, 2528, 3048
BstXI	CCANNNNNNTGG	1 cut(s)	656
BstYI	RGATCY	6 cut(s)	373, 1067, 2062, 2332, 2528, 3048
Bsu36I	CCTNAGG	1 cut(s)	1209
BsuI	GTATCC	2 cut(s)	1717, 1872
BsuRI	GGCC	7 cut(s)	214, 2507, 3693, 4318, 4636, 4688, 4755
BtgI	CCRYGG	4 cut(s)	765, 899, 2129, 4649
BtgZI	GCGATG	1 cut(s)	3381
BtrI	CACGTC	1 cut(s)	862
BtsI	GCAGTG	5 cut(s)	312, 1677, 1822, 2183, 3853
BtsIMutI	CAGTG	8 cut(s)	312, 1131, 1677, 1822, 2183, 3853, 4407, 4713
BveI	ACCTGC	2 cut(s)	1233, 2696
Cac8I	GCNNGC	3 cut(s)	922, 2451, 4085
CaiI	CAGNNNCTG	1 cut(s)	536
CciI	TCATGA	2 cut(s)	1033, 4066
CfoI	GCGC	1 cut(s)	49
Cfr10I	RCCGGY	1 cut(s)	3418
Cfr13I	GGNCC	8 cut(s)	213, 659, 2376, 3692, 4316, 4635, 4686, 4687
CseI	GACGC	1 cut(s)	2960
CsiI	ACCWGGT	3 cut(s)	928, 1483, 4383
CspAI	ACCGGT	1 cut(s)	3418
DinI	GGCGCC	1 cut(s)	48
DraI	TTTAAA	2 cut(s)	1569, 2638
DraIII	CACNNNGTG	1 cut(s)	3707
DrdI	GACNNNNNNGTC	1 cut(s)	3612
DriI	GACNNNNNGTC	1 cut(s)	3643
DseDI	GACNNNNNNGTC	1 cut(s)	3612
EaeI	YGGCCR	1 cut(s)	2505
Eam1104I	CTCTTC	6 cut(s)	629, 1599, 2733, 2973, 4386, 4412
Eam1105I	GACNNNNNGTC	1 cut(s)	3643
EarI	CTCTTC	6 cut(s)	629, 1599, 2733, 2973, 4386, 4412
EciI	GGCGGA	2 cut(s)	366, 640
Eco105I	TACGTA	1 cut(s)	1385
Eco130I	CCWWGG	7 cut(s)	899, 1283, 4008, 4337, 4446, 4492, 4649
Eco24I	GRGCYC	1 cut(s)	4690
Eco31I	GGTCTC	4 cut(s)	2119, 3210, 4327, 4414
Eco32I	GATATC	2 cut(s)	961, 2887
Eco47I	GGWCC	2 cut(s)	659, 2376
Eco72I	CACGTG	1 cut(s)	3101
Eco81I	CCTNAGG	1 cut(s)	1209
Eco88I	CYCGRG	1 cut(s)	50
EcoO109I	RGGNCCY	1 cut(s)	4635
EcoRI	GAATTC	4 cut(s)	640, 1230, 1702, 3536
EcoRV	GATATC	2 cut(s)	961, 2887
EcoT14I	CCWWGG	7 cut(s)	899, 1283, 4008, 4337, 4446, 4492, 4649
EcoT22I	ATGCAT	3 cut(s)	1108, 2455, 2853
EcoT38I	GRGCYC	1 cut(s)	4690
EgeI	GGCGCC	1 cut(s)	48
EheI	GGCGCC	1 cut(s)	48
ErhI	CCWWGG	7 cut(s)	899, 1283, 4008, 4337, 4446, 4492, 4649
Esp3I	CGTCTC	1 cut(s)	4095
FaqI	GGGAC	3 cut(s)	697, 1459, 3178
FauI	CCCGC	1 cut(s)	355
FauNDI	CATATG	2 cut(s)	1141, 2807
FbaI	TGATCA	1 cut(s)	1750
FriOI	GRGCYC	1 cut(s)	4690
GlaI	GCGC	1 cut(s)	48
GsaI	CCCAGC	1 cut(s)	4199
GsuI	CTGGAG	5 cut(s)	1116, 1983, 1992, 3669, 4737
HaeII	RGCGCY	1 cut(s)	50
HaeIII	GGCC	7 cut(s)	214, 2507, 3693, 4318, 4636, 4688, 4755
HapII	CCGG	4 cut(s)	596, 794, 953, 3419
HgaI	GACGC	1 cut(s)	2960
HhaI	GCGC	1 cut(s)	49
Hin1I	GRCGYC	1 cut(s)	47
Hin6I	GCGC	1 cut(s)	47
HinP1I	GCGC	1 cut(s)	47
HincII	GTYRAC	4 cut(s)	807, 1846, 2512, 3617
HindII	GTYRAC	4 cut(s)	807, 1846, 2512, 3617
HindIII	AAGCTT	1 cut(s)	884
HpaI	GTTAAC	1 cut(s)	2512
HpaII	CCGG	4 cut(s)	596, 794, 953, 3419
HpyCH4IV	ACGT	5 cut(s)	619, 861, 1023, 1384, 3100
HpySE526I	ACGT	5 cut(s)	619, 861, 1023, 1384, 3100
Hsp92I	GRCGYC	1 cut(s)	47
HspAI	GCGC	1 cut(s)	47
KasI	GGCGCC	1 cut(s)	46
KpnI	GGTACC	1 cut(s)	776
Ksp22I	TGATCA	1 cut(s)	1750
KspAI	GTTAAC	1 cut(s)	2512
LguI	GCTCTTC	3 cut(s)	1599, 2733, 4386
LmnI	GCTCC	8 cut(s)	468, 1693, 2167, 2189, 2242, 2702, 4131, 4667
MabI	ACCWGGT	3 cut(s)	928, 1483, 4383
MaeII	ACGT	5 cut(s)	619, 861, 1023, 1384, 3100
MfeI	CAATTG	4 cut(s)	87, 1318, 3166, 3276
MflI	RGATCY	6 cut(s)	373, 1067, 2062, 2332, 2528, 3048
MhlI	GDGCHC	6 cut(s)	1690, 2724, 4542, 4649, 4690, 4713
Mly113I	GGCGCC	1 cut(s)	47
MmeI	TCCRAC	6 cut(s)	86, 860, 2081, 2799, 3476, 4317
Mph1103I	ATGCAT	3 cut(s)	1108, 2455, 2853
MroXI	GAANNNNTTC	3 cut(s)	1125, 2425, 3714
MspA1I	CMGCKG	7 cut(s)	1008, 1429, 2939, 3467, 3902, 4485, 4554
MspI	CCGG	4 cut(s)	596, 794, 953, 3419
MunI	CAATTG	4 cut(s)	87, 1318, 3166, 3276
NarI	GGCGCC	1 cut(s)	47
NciI	CCSGG	1 cut(s)	795
NcoI	CCATGG	2 cut(s)	899, 4649
NdeI	CATATG	2 cut(s)	1141, 2807
NsiI	ATGCAT	3 cut(s)	1108, 2455, 2853
NspI	RCATGY	7 cut(s)	1000, 1866, 1875, 2057, 2153, 2200, 2453
OliI	CACNNNNGTG	2 cut(s)	654, 4614
PaeI	GCATGC	1 cut(s)	2453
PagI	TCATGA	2 cut(s)	1033, 4066
PasI	CCCWGGG	1 cut(s)	239
PciSI	GCTCTTC	3 cut(s)	1599, 2733, 4386
PcsI	WCGNNNNNNNCGW	1 cut(s)	1232
PdmI	GAANNNNTTC	3 cut(s)	1125, 2425, 3714
PfeI	GAWTC	8 cut(s)	1255, 1302, 1607, 1633, 2012, 3350, 3562, 3800
PflFI	GACNNNGTC	2 cut(s)	1447, 4233
PflMI	CCANNNNNTGG	1 cut(s)	331
PfoI	TCCNGGA	1 cut(s)	1093
PinAI	ACCGGT	1 cut(s)	3418
PluTI	GGCGCC	1 cut(s)	50
PmaCI	CACGTG	1 cut(s)	3101
PmlI	CACGTG	1 cut(s)	3101
Ppu21I	YACGTR	3 cut(s)	620, 1385, 3101
PspCI	CACGTG	1 cut(s)	3101
PspFI	CCCAGC	1 cut(s)	4195
PspOMI	GGGCCC	1 cut(s)	4686
PspPI	GGNCC	8 cut(s)	213, 659, 2376, 3692, 4316, 4635, 4686, 4687
PstI	CTGCAG	4 cut(s)	1381, 2248, 2920, 3466
PstNI	CAGNNNCTG	1 cut(s)	536
PsuI	RGATCY	6 cut(s)	373, 1067, 2062, 2332, 2528, 3048
PsyI	GACNNNGTC	2 cut(s)	1447, 4233
PvuII	CAGCTG	6 cut(s)	1008, 1429, 2939, 3467, 3902, 4485
SapI	GCTCTTC	3 cut(s)	1599, 2733, 4386
Sau96I	GGNCC	8 cut(s)	213, 659, 2376, 3692, 4316, 4635, 4686, 4687
ScaI	AGTACT	3 cut(s)	1744, 2692, 2842
SduI	GDGCHC	6 cut(s)	1690, 2724, 4542, 4649, 4690, 4713
SexAI	ACCWGGT	3 cut(s)	928, 1483, 4383
SfcI	CTRYAG	8 cut(s)	1377, 2031, 2244, 2697, 2916, 3462, 3633, 4501
SfoI	GGCGCC	1 cut(s)	48
SinI	GGWCC	2 cut(s)	659, 2376
SmlI	CTYRAG	1 cut(s)	4143
SmoI	CTYRAG	1 cut(s)	4143
SnaBI	TACGTA	1 cut(s)	1385
SpeI	ACTAGT	1 cut(s)	3734
SphI	GCATGC	1 cut(s)	2453
SsiI	CCGC	7 cut(s)	211, 362, 377, 380, 625, 1492, 4552
SspDI	GGCGCC	1 cut(s)	46
SspI	AATATT	1 cut(s)	2663
StyI	CCWWGG	7 cut(s)	899, 1283, 4008, 4337, 4446, 4492, 4649
TaiI	ACGT	5 cut(s)	622, 864, 1026, 1387, 3103
TaqI	TCGA	5 cut(s)	101, 1442, 2343, 2435, 2477
TaqII	GACCGA	1 cut(s)	3602
TatI	WGTACW	4 cut(s)	1742, 1782, 2690, 2840
TauI	GCSGC	2 cut(s)	214, 382
TfiI	GAWTC	8 cut(s)	1255, 1302, 1607, 1633, 2012, 3350, 3562, 3800
TscAI	CASTG	8 cut(s)	312, 1138, 1684, 1822, 2183, 3853, 4407, 4720
TspGWI	ACGGA	5 cut(s)	754, 1224, 1736, 2146, 4810
TspRI	CASTG	8 cut(s)	312, 1138, 1684, 1822, 2183, 3853, 4407, 4720
Tth111I	GACNNNGTC	2 cut(s)	1447, 4233
Van91I	CCANNNNNTGG	1 cut(s)	331
VneI	GTGCAC	2 cut(s)	4538, 4709
VpaK11BI	GGWCC	2 cut(s)	659, 2376
XbaI	TCTAGA	2 cut(s)	2522, 2551
XceI	RCATGY	7 cut(s)	1000, 1866, 1875, 2057, 2153, 2200, 2453
XmaJI	CCTAGG	1 cut(s)	4492
XmnI	GAANNNNTTC	3 cut(s)	1125, 2425, 3714
ZrmI	AGTACT	3 cut(s)	1744, 2692, 2842
Zsp2I	ATGCAT	3 cut(s)	1108, 2455, 2853

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.