Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0005507

Physical Location & Seq

Genomic Coordinates Reverse (-)

41916697 .. 41918478

Gene Structure 1782 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0303100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGAATTGGTTTCCTTTTGCAGACAAAAACTATCATGGTTTCATCGTTCATGAAAGTTTGCAGAGGATACGTGAAACAAAGCTTGTTAACTTTATTGAGTGGGCCCCTGCAAGCATTCAGGTTGCGTTGTCTAGGAAGTCTCCACATGTGCAAACTGGCCATAGGGTCAGTGGTCTTATGCCAGCCAGCCATACTAGTATTCGCCACCTTTTCAGCAAGTGTTTGAGCCAGAATTCGTTGTTAAGAAAGAAGCAAGCTTTTCTTGATAACTACCGGAAGTTCCCAATGTTTGCTGAGAATGACCTTTCAGAATTTGATGAATCAAGAGAAATACTTGAGTGTTTGGTTGATGAATATAAGGCCTGTGAGTCCCCAGATTTCATCAAATGGGGAATGGAGGATCCAGACCACGTTCTTACAGGGGAAGGCAGGTATTTGCCGAACAGAGAATCAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003700 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008214 GO:0009653 GO:0009719 GO:0009725 GO:0009741 GO:0009826 GO:0009889 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0014070 GO:0016043 GO:0016049 GO:0016569 GO:0016570 GO:0016577 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0032451 GO:0032452 GO:0032502 GO:0032989 GO:0033169 GO:0033993 GO:0036211 GO:0040007 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045814 GO:0048519 GO:0048577 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048587 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0051276 GO:0060255 GO:0060560 GO:0065007 GO:0070076 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0140096 GO:0140110 GO:1901564 GO:1901700 GO:1903506 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

JmjC JmjN zf-C2H2

Protein Analysis

152

Amino Acids

17.74

Weight (kDa)

6.37

Isoelectric Point (pI)

45.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tubulin_C	PF03953	16 - 74	1.2e-15	Tubulin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005507)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04240
fragaria_vesca	FvH4_7g19090 FvH4_7g19090 FvH4_7g19090 FvH4_7g19090 FvH4_7g19090 FvH4_7g19090 FvH4_7g19090 FvH4_7g19090 FvH4_7g19090
malus_domestica	MD01G1106000.v1.1 MD07G1172400.v1.1
prunus_persica	Prupe.2G211400_v2.0.a1 Prupe.2G211400_v2.0.a1
pyrus_communis	pycom01g13280 pycom07g16690
rosa_chinensis	RchiOBHm_Chr1g0362971
rosa_laevigata	RLG00000027605
rosa_multiflora	Rmu_sc0000174.1_g000009
rosa_roxburghii	Rroxscaffold_4G00293590
rosa_rugosa	Rorug01G0302900 Rorug01G0303000 Rorug01G0303100 Rorug01G0303200
rosa_samantha	Rh1AG312100 Rh1BG275600 Rh1CG292500 Rh1DG306300
rosa_wichuraiana	Rw1G027660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	420
AclWI	GGATC	2 cut(s)	395, 408
AcoI	YGGCCR	1 cut(s)	157
AcsI	RAATTY	2 cut(s)	232, 311
AflIII	ACRYGT	1 cut(s)	145
AhlI	ACTAGT	1 cut(s)	194
AluBI	AGCT	2 cut(s)	82, 257
AluI	AGCT	2 cut(s)	82, 257
Alw26I	GTCTC	1 cut(s)	144
AlwI	GGATC	2 cut(s)	395, 408
AoxI	GGCC	3 cut(s)	102, 157, 360
ApaI	GGGCCC	1 cut(s)	106
ApoI	RAATTY	2 cut(s)	232, 311
AspS9I	GGNCC	2 cut(s)	102, 103
BaeGI	GKGCMC	1 cut(s)	106
BalI	TGGCCA	1 cut(s)	159
BamHI	GGATCC	1 cut(s)	400
BanII	GRGCYC	1 cut(s)	106
BciVI	GTATCC	1 cut(s)	60
BcoDI	GTCTC	1 cut(s)	144
BcuI	ACTAGT	1 cut(s)	194
BfaI	CTAG	2 cut(s)	132, 195
BfuAI	ACCTGC	1 cut(s)	420
BfuI	GTATCC	1 cut(s)	60
BmgT120I	GGNCC	2 cut(s)	102, 103
BmiI	GGNNCC	3 cut(s)	104, 105, 402
BpuEI	CTTGAG	1 cut(s)	356
BsaAI	YACGTR	1 cut(s)	71
BsaWI	WCCGGW	1 cut(s)	273
Bse1I	ACTGG	1 cut(s)	160
BseMII	CTCAG	1 cut(s)	285
BseNI	ACTGG	1 cut(s)	160
BseSI	GKGCMC	1 cut(s)	106
BshFI	GGCC	3 cut(s)	104, 159, 362
BsiSI	CCGG	1 cut(s)	274
BslFI	GGGAC	1 cut(s)	355
BsmAI	GTCTC	1 cut(s)	144
BsmFI	GGGAC	1 cut(s)	355
BsmI	GAATGC	1 cut(s)	114
BsnI	GGCC	3 cut(s)	104, 159, 362
Bsp120I	GGGCCC	1 cut(s)	102
Bsp1286I	GDGCHC	1 cut(s)	106
Bsp143I	GATC	1 cut(s)	400
BspANI	GGCC	3 cut(s)	104, 159, 362
BspCNI	CTCAG	1 cut(s)	286
BspHI	TCATGA	1 cut(s)	49
BspLI	GGNNCC	3 cut(s)	104, 105, 402
BspMI	ACCTGC	1 cut(s)	420
BspPI	GGATC	2 cut(s)	395, 408
BsrI	ACTGG	1 cut(s)	160
BssMI	GATC	1 cut(s)	400
BstBAI	YACGTR	1 cut(s)	71
BstC8I	GCNNGC	4 cut(s)	112, 183, 187, 255
BstDEI	CTNAG	1 cut(s)	294
BstKTI	GATC	1 cut(s)	403
BstMAI	GTCTC	1 cut(s)	144
BstMBI	GATC	1 cut(s)	400
BstNSI	RCATGY	1 cut(s)	149
BstSLI	GKGCMC	1 cut(s)	106
BstX2I	RGATCY	1 cut(s)	400
BstYI	RGATCY	1 cut(s)	400
BsuI	GTATCC	1 cut(s)	60
BsuRI	GGCC	3 cut(s)	104, 159, 362
BtsIMutI	CAGTG	1 cut(s)	175
BveI	ACCTGC	1 cut(s)	420
Cac8I	GCNNGC	4 cut(s)	112, 183, 187, 255
CciI	TCATGA	1 cut(s)	49
Cfr13I	GGNCC	2 cut(s)	102, 103
CviAII	CATG	3 cut(s)	35, 50, 146
CviJI	RGCY	8 cut(s)	82, 104, 159, 185, 189, 228, 257, 362
CviKI_1	RGCY	8 cut(s)	82, 104, 159, 185, 189, 228, 257, 362
DdeI	CTNAG	1 cut(s)	294
DpnI	GATC	1 cut(s)	402
DpnII	GATC	1 cut(s)	400
EaeI	YGGCCR	1 cut(s)	157
Eco147I	AGGCCT	1 cut(s)	362
Eco24I	GRGCYC	1 cut(s)	106
EcoO109I	RGGNCCY	1 cut(s)	103
EcoRI	GAATTC	1 cut(s)	232
EcoT38I	GRGCYC	1 cut(s)	106
FaeI	CATG	3 cut(s)	38, 53, 149
FaiI	YATR	7 cut(s)	36, 51, 147, 162, 179, 192, 357
FalI	AAGNNNNNCTT	2 cut(s)	246, 278
FaqI	GGGAC	1 cut(s)	355
FatI	CATG	3 cut(s)	34, 49, 145
FriOI	GRGCYC	1 cut(s)	106
FspBI	CTAG	2 cut(s)	132, 195
HaeIII	GGCC	3 cut(s)	104, 159, 362
HapII	CCGG	1 cut(s)	274
Hin1II	CATG	3 cut(s)	38, 53, 149
HincII	GTYRAC	1 cut(s)	88
HindII	GTYRAC	1 cut(s)	88
HindIII	AAGCTT	2 cut(s)	80, 255
HinfI	GANTC	3 cut(s)	320, 368, 449
HpaI	GTTAAC	1 cut(s)	88
HpaII	CCGG	1 cut(s)	274
Hpy166II	GTNNAC	1 cut(s)	88
Hpy188I	TCNGA	1 cut(s)	310
Hpy188III	TCNNGA	4 cut(s)	50, 263, 324, 404
Hpy8I	GTNNAC	1 cut(s)	88
HpyAV	CCTTC	1 cut(s)	419
HpyCH4IV	ACGT	2 cut(s)	70, 411
HpyCH4V	TGCA	4 cut(s)	20, 61, 110, 151
HpyF3I	CTNAG	1 cut(s)	294
HpySE526I	ACGT	2 cut(s)	70, 411
Hsp92II	CATG	3 cut(s)	38, 53, 149
KspAI	GTTAAC	1 cut(s)	88
Kzo9I	GATC	1 cut(s)	400
MaeI	CTAG	2 cut(s)	132, 195
MaeII	ACGT	2 cut(s)	70, 411
MalI	GATC	1 cut(s)	402
MboI	GATC	1 cut(s)	400
MflI	RGATCY	1 cut(s)	400
MhlI	GDGCHC	1 cut(s)	106
MlsI	TGGCCA	1 cut(s)	159
MluCI	AATT	4 cut(s)	4, 232, 311, 453
MluNI	TGGCCA	1 cut(s)	159
MlyI	GAGTC	1 cut(s)	377
MnlI	CCTC	2 cut(s)	57, 391
Mox20I	TGGCCA	1 cut(s)	159
MscI	TGGCCA	1 cut(s)	159
MseI	TTAA	2 cut(s)	87, 242
Msp20I	TGGCCA	1 cut(s)	159
MspI	CCGG	1 cut(s)	274
Mva1269I	GAATGC	1 cut(s)	114
NdeII	GATC	1 cut(s)	400
NlaIII	CATG	3 cut(s)	38, 53, 149
NlaIV	GGNNCC	3 cut(s)	104, 105, 402
NspI	RCATGY	1 cut(s)	149
PagI	TCATGA	1 cut(s)	49
PceI	AGGCCT	1 cut(s)	362
PciI	ACATGT	1 cut(s)	145
PctI	GAATGC	1 cut(s)	114
PfeI	GAWTC	2 cut(s)	320, 449
PleI	GAGTC	1 cut(s)	376
PpsI	GAGTC	1 cut(s)	376
Ppu21I	YACGTR	1 cut(s)	71
PscI	ACATGT	1 cut(s)	145
PspN4I	GGNNCC	3 cut(s)	104, 105, 402
PspOMI	GGGCCC	1 cut(s)	102
PspPI	GGNCC	2 cut(s)	102, 103
PsuI	RGATCY	1 cut(s)	400
SaqAI	TTAA	2 cut(s)	87, 242
Sau3AI	GATC	1 cut(s)	400
Sau96I	GGNCC	2 cut(s)	102, 103
SchI	GAGTC	1 cut(s)	377
SduI	GDGCHC	1 cut(s)	106
SetI	ASST	8 cut(s)	73, 84, 123, 210, 259, 306, 414, 434
SmlI	CTYRAG	1 cut(s)	335
SmoI	CTYRAG	1 cut(s)	335
SpeI	ACTAGT	1 cut(s)	194
Sse9I	AATT	4 cut(s)	4, 232, 311, 453
SseBI	AGGCCT	1 cut(s)	362
SspMI	CTAG	2 cut(s)	132, 195
StuI	AGGCCT	1 cut(s)	362
TaiI	ACGT	2 cut(s)	73, 414
TasI	AATT	4 cut(s)	4, 232, 311, 453
TfiI	GAWTC	2 cut(s)	320, 449
Tru1I	TTAA	2 cut(s)	87, 242
Tru9I	TTAA	2 cut(s)	87, 242
TscAI	CASTG	1 cut(s)	175
TspDTI	ATGAA	7 cut(s)	17, 31, 38, 66, 333, 366, 370
TspRI	CASTG	1 cut(s)	175
XapI	RAATTY	2 cut(s)	232, 311
XceI	RCATGY	1 cut(s)	149
XcmI	CCANNNNNNNNNTGG	1 cut(s)	167
XspI	CTAG	2 cut(s)	132, 195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.