Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0005507

Physical Location & Seq

Genomic Coordinates Reverse (-)

41886466 .. 41891420

Gene Structure 4955 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0302900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2463 bp

ATGTCGAATTGGAGAGAGGAAGATTATGGAGAAGACGAGAGCGAGATGCGGGAGGAGGAGAGGAGAGGAGGACGAGGGGGGAGATTGAATTCTGACGAGATTGAGATCCAGAAGCGGAGAGGGCGAGGGTCGAATTCGAAGAAGAGGAAATTGAAATCCGTTGCGGCGGAGGAGGAGGAGGAAGAAGGCGGTGGTGGAAGGCCTTTTAAGTCCATGTTTGTGGATGATGAGGCTATTGAGGATGAAGATGAAGATGAGGAGGAAGACGATGAGGGTGAATTGGATGGGTTTATTGTTAATGAACCGGAGTTTGATAACGAACCTGATCATGATGGTGGCGGTGGGAGAAGGATGGGGTTTGTTCTTCCGGAGGAAGAAGAAGAGGAGGATATTGATGAGTTTGAAAGAAGGGTTCAAGACAGATTTAGGGATGTTCATGTGGAAGAATATGAGGATGATACGGAGGTTGGACAGCAAGCTCTCATACCCGGTGTTAAGGACCCGAAATTGTGGTTGGTGAAGTGTGCCATTGGTAAAGAGAGAGAGGTAGCGGCTTGTCTAATGCACAAGTGTATTGATAATCCTGGAGAATTGCAGATCATGTCTGCAATTGCTTTGGATCACTTGAAAAGCTTCATATATGTTGAAGCTTACAAAGAAGCCCATGTGAGGGAAGCTTGCAAAGGTCTGAGGTATGTAATTCTGCAGAAAATAATGCTTGTTCCTATTAAAGAGATGATTGATGTGCTATCATGTGAAAGCAAGAGCATTGTAAATGATAAATGGGTTAGGATTAAGACAGGAGTATATAAAGGGGACCTTGCCAAGATTGTGGGGCATGTCCCGGGGAGACAGCAAGTTAGAGTAAAGTTAATTCCAAGGGTTGATTTACAAGCTCTTGCAAAAGGTGTAGAATCATCAAAGAAGAAGGAATCTGGCGCACGTCCTGATCGTGTTCCTGCACTTCTTAGGAACATGAACCTAGTTAGACAGCTGGGTGTACGAGTACAGTCCATGCGAGATCCATTGGCACGTGGTTATATTGAGAAGGTTGATGGCTTATCTGGGATGATCTTTAAAGATGGTTTCCATCTTAAAGTTGTTTCTGATAAAAGTATAAAAGAGGCAAAACCCTCCTTGCAAGAACTTGAAGAATTCCAGGAACTTGATGGTGATGGAGATCATACAATTCCAAATAGAAAGAAAGGCGAAAGCTTTATGAAGGGCGATGCAGTTATTGTTACGGACGGAGATCTGAGAAACTTGGTGGGACGGGTTGAGAAAGTGGAGTTAGGGACTGTTCATATCAAAGCGGAAATGGATGGCCTCCCGGAAACTGTTGCCATCAATCAAACAGCACTTCAGAAATGCTTTAAAGAAGGGCAGCATGTGAAGGTTGTTAGTGGTAGTCAACAAGGAGCAACTGGCATGGTTGTTAAGGTTGATCAGCAGAAGCAGTTGATCACCATTTTATCTGATGCAACCAATGAAGCTATCTGCGTGTTCTCTGATCATGCTGTGGAGAGTCCTGAAGTGAATAATGGTGATACAATGGGCGACTCCCACTGCTTAAGGTATCACAAAATCCCTAGTCAAAGTCCAAGGTTTTCTGGAGGTGCAAGAAGGCATGATGGGCAGGATGGTTTTGGTAAAGGGAGCCGAGTAAAGTTCCGTCTAGGTCCCTATAAAGGCTGCAGGGGGCGTGTTGTGGAGGTTAAAGGATCAAATGTAAGGGTTGAACTAGAGTCCCAGATGAAGACTGTTGTTGTTGATCGTCTGCATTGTATTTCAGAATCAGGTAATGTTGCTGCTGCAGTTACAACACCATATCGCTCTGGTTGTGAGACCCCAATGCCTTGCATGAGCACTCCTATGAGAGATCCTGGAGCAACGTCAATGCCTTACATGACAACTCCCATGAGAGATCCTGGAGCATCCCCAATGCGTTATATGACGACTCCTTACATGATGACTCCCAGAAGAGATCCCCCCCCGAGCAACACCAATACATGGTGGCATGAGAACTCCACCTATGACTCCCATGAGAGATCCCCGAGCAACACCGATACATGGTGGCATGAGGACCCCTCCTATATATTAGAGCTTGATTCAACTTTTGGTTTATCAAATGATGGTTGTGTGAACAAAGTTTCTTTTGTTTCTTTAGTCTCTGTTTTCATTCAGTTGTATAGTACTATTAGTCTCGATCTTGTTATTTCACAACACGATGGAGTTCATAACAAAGTTGCGTTGTCTAGGAAGTCTCCATATGTGCAAACTGGCCATAGGGAGAATGACCTTTCAGAATTTGATGAATCAAGAGAAATACTTGAGTGTTTGGTTGATGAATATAAGGCCTGTGAGTCCCCAGATTACATCAAATGGGGAATGGAGGATCCAGACCACGTTCTTACAGGAGAAGGCAGTGCAGCAGGAACAGTGGACCCAAAATTGGCAGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003700 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008214 GO:0009653 GO:0009719 GO:0009725 GO:0009741 GO:0009826 GO:0009889 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0014070 GO:0016043 GO:0016049 GO:0016569 GO:0016570 GO:0016577 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0032451 GO:0032452 GO:0032502 GO:0032989 GO:0033169 GO:0033993 GO:0036211 GO:0040007 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045814 GO:0048519 GO:0048577 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048587 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0051276 GO:0060255 GO:0060560 GO:0065007 GO:0070076 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0140096 GO:0140110 GO:1901564 GO:1901700 GO:1903506 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

JmjC JmjN zf-C2H2

Protein Analysis

820

Amino Acids

91.83

Weight (kDa)

5.12

Isoelectric Point (pI)

48.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Spt5-NGN	PF03439	169 - 250	1e-23	Early transcription elongation factor of RNA pol II, NGN section
KOW1_SPT5	PF23042	258 - 386	7.2e-27	Transcription elongation factor SPT5, KOW1 domain
KOW2_Spt5	PF23284	408 - 457	3.1e-15	Transcription elongation factor SPT5, second KOW domain
KOW5_SPT5	PF23290	552 - 592	2.8e-12	Transcription elongation factor SPT5, fifth KOW domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005507)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04240
fragaria_vesca	FvH4_7g19090 FvH4_7g19090 FvH4_7g19090 FvH4_7g19090 FvH4_7g19090 FvH4_7g19090 FvH4_7g19090 FvH4_7g19090 FvH4_7g19090
malus_domestica	MD01G1106000.v1.1 MD07G1172400.v1.1
prunus_persica	Prupe.2G211400_v2.0.a1 Prupe.2G211400_v2.0.a1
pyrus_communis	pycom01g13280 pycom07g16690
rosa_chinensis	RchiOBHm_Chr1g0362971
rosa_laevigata	RLG00000027605
rosa_multiflora	Rmu_sc0000174.1_g000009
rosa_roxburghii	Rroxscaffold_4G00293590
rosa_rugosa	Rorug01G0302900 Rorug01G0303000 Rorug01G0303100 Rorug01G0303200
rosa_samantha	Rh1AG312100 Rh1BG275600 Rh1CG292500 Rh1DG306300
rosa_wichuraiana	Rw1G027660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	2010
AccIII	TCCGGA	1 cut(s)	367
AciI	CCGC	8 cut(s)	49, 115, 164, 167, 189, 339, 551, 1313
AcoI	YGGCCR	1 cut(s)	2281
AcsI	RAATTY	4 cut(s)	88, 133, 1154, 2306
AcuI	CTGAAG	2 cut(s)	1346, 1551
AcvI	CACGTG	1 cut(s)	1034
AfaI	GTAC	3 cut(s)	1002, 1008, 2194
AfiI	CCNNNNNNNGG	6 cut(s)	669, 670, 1688, 2010, 2070, 2452
AflII	CTTAAG	1 cut(s)	1570
AgsI	TTSAA	9 cut(s)	88, 154, 404, 416, 628, 647, 1151, 1739, 2112
AjiI	CACGTC	1 cut(s)	944
AjnI	CCWGG	4 cut(s)	583, 1158, 1882, 1927
AjuI	GAANNNNNNNTTGG	2 cut(s)	497, 529
AluBI	AGCT	9 cut(s)	479, 633, 650, 677, 896, 994, 1215, 1493, 2104
AluI	AGCT	9 cut(s)	479, 633, 650, 677, 896, 994, 1215, 1493, 2104
Alw21I	GWGCWC	1 cut(s)	1868
Alw26I	GTCTC	5 cut(s)	844, 1838, 2173, 2207, 2268
Ama87I	CYCGRG	3 cut(s)	844, 1993, 2053
Aor13HI	TCCGGA	1 cut(s)	367
AoxI	GGCC	4 cut(s)	200, 1324, 2281, 2355
ApeKI	GCWGC	5 cut(s)	1384, 1692, 1808, 1811, 2429
ApoI	RAATTY	4 cut(s)	88, 133, 1154, 2306
Asp700I	GAANNNNTTC	1 cut(s)	632
AspLEI	GCGC	1 cut(s)	941
AspS9I	GGNCC	5 cut(s)	499, 817, 1679, 2083, 2443
AsuC2I	CCSGG	4 cut(s)	489, 845, 846, 1331
AsuHPI	GGTGA	5 cut(s)	287, 529, 1184, 1456, 1556
AsuII	TTCGAA	1 cut(s)	137
AvaI	CYCGRG	3 cut(s)	844, 1993, 2053
AvaII	GGWCC	5 cut(s)	499, 817, 1679, 2083, 2443
BaeI	ACNNNNGTAYC	2 cut(s)	450, 483
BalI	TGGCCA	1 cut(s)	2283
BamHI	GGATCC	1 cut(s)	2395
BbrPI	CACGTG	1 cut(s)	1034
BbsI	GAAGAC	3 cut(s)	39, 270, 1763
Bbv12I	GWGCWC	1 cut(s)	1868
BbvI	GCAGC	5 cut(s)	1396, 1679, 1795, 1798, 2441
BciT130I	CCWGG	4 cut(s)	585, 1160, 1884, 1929
BclI	TGATCA	4 cut(s)	325, 1444, 1461, 1510
BcnI	CCSGG	4 cut(s)	489, 845, 846, 1331
BcoDI	GTCTC	5 cut(s)	844, 1838, 2173, 2207, 2268
BfaI	CTAG	5 cut(s)	983, 1590, 1676, 1742, 2256
BfmI	CTRYAG	3 cut(s)	704, 1693, 1812
BfrI	CTTAAG	1 cut(s)	1570
BglII	AGATCT	1 cut(s)	1252
BisI	GCNGC	7 cut(s)	165, 552, 1385, 1693, 1809, 1812, 2430
BlsI	GCNGC	7 cut(s)	166, 553, 1386, 1694, 1810, 1813, 2431
BmcAI	AGTACT	1 cut(s)	2194
Bme1390I	CCNGG	8 cut(s)	489, 585, 845, 846, 1160, 1331, 1884, 1929
Bme18I	GGWCC	5 cut(s)	499, 817, 1679, 2083, 2443
BmeT110I	CYCGRG	3 cut(s)	844, 1993, 2053
BmgBI	CACGTC	1 cut(s)	944
BmgT120I	GGNCC	5 cut(s)	499, 817, 1679, 2083, 2443
BmiI	GGNNCC	7 cut(s)	501, 818, 1658, 1681, 2085, 2397, 2445
BmrFI	CCNGG	8 cut(s)	489, 585, 845, 846, 1160, 1331, 1884, 1929
BmsI	GCATC	4 cut(s)	36, 1219, 1468, 1943
BpiI	GAAGAC	3 cut(s)	39, 270, 1763
BplI	GAGNNNNNCTC	2 cut(s)	2072, 2104
BpmI	CTGGAG	4 cut(s)	606, 1632, 1905, 1950
Bpu14I	TTCGAA	1 cut(s)	137
BpuEI	CTTGAG	1 cut(s)	2351
BpuMI	CCSGG	4 cut(s)	489, 845, 846, 1331
BsaAI	YACGTR	1 cut(s)	1034
BsaBI	GATNNNNATC	2 cut(s)	104, 1179
BsaI	GGTCTC	1 cut(s)	1838
BsaJI	CCNNGG	4 cut(s)	844, 845, 878, 1601
BsaWI	WCCGGW	2 cut(s)	304, 367
Bsc4I	CCNNNNNNNGG	6 cut(s)	669, 670, 1688, 2010, 2070, 2452
Bse1I	ACTGG	2 cut(s)	1429, 2284
Bse8I	GATNNNNATC	2 cut(s)	104, 1179
BseAI	TCCGGA	1 cut(s)	367
BseBI	CCWGG	4 cut(s)	585, 1160, 1884, 1929
BseDI	CCNNGG	4 cut(s)	844, 845, 878, 1601
BseJI	GATNNNNATC	2 cut(s)	104, 1179
BseLI	CCNNNNNNNGG	6 cut(s)	669, 670, 1688, 2010, 2070, 2452
BseMII	CTCAG	2 cut(s)	680, 1247
BseNI	ACTGG	2 cut(s)	1429, 2284
BseRI	GAGGAG	9 cut(s)	68, 71, 76, 81, 185, 188, 191, 272, 398
BseXI	GCAGC	5 cut(s)	1396, 1679, 1795, 1798, 2441
BseYI	CCCAGC	1 cut(s)	994
BsgI	GTGCAG	2 cut(s)	945, 2448
BshFI	GGCC	4 cut(s)	202, 1326, 2283, 2357
BsiHKAI	GWGCWC	1 cut(s)	1868
BsiHKCI	CYCGRG	3 cut(s)	844, 1993, 2053
BsiSI	CCGG	5 cut(s)	305, 368, 489, 845, 1331
BslFI	GGGAC	7 cut(s)	827, 830, 1284, 1309, 1665, 1732, 2350
BslI	CCNNNNNNNGG	6 cut(s)	669, 670, 1688, 2010, 2070, 2452
BsmAI	GTCTC	5 cut(s)	844, 1838, 2173, 2207, 2268
BsmFI	GGGAC	7 cut(s)	827, 830, 1284, 1309, 1665, 1732, 2350
BsnI	GGCC	4 cut(s)	202, 1326, 2283, 2357
Bso31I	GGTCTC	1 cut(s)	1838
BsoBI	CYCGRG	3 cut(s)	844, 1993, 2053
Bsp119I	TTCGAA	1 cut(s)	137
Bsp1286I	GDGCHC	1 cut(s)	1868
Bsp13I	TCCGGA	1 cut(s)	367
BspACI	CCGC	8 cut(s)	49, 115, 164, 167, 189, 339, 551, 1313
BspANI	GGCC	4 cut(s)	202, 1326, 2283, 2357
BspCNI	CTCAG	2 cut(s)	681, 1248
BspEI	TCCGGA	1 cut(s)	367
BspHI	TCATGA	1 cut(s)	328
BspLI	GGNNCC	7 cut(s)	501, 818, 1658, 1681, 2085, 2397, 2445
BspMAI	CTGCAG	3 cut(s)	708, 1697, 1816
BspT104I	TTCGAA	1 cut(s)	137
BspTI	CTTAAG	1 cut(s)	1570
BspTNI	GGTCTC	1 cut(s)	1838
BsrI	ACTGG	2 cut(s)	1429, 2284
BssECI	CCNNGG	4 cut(s)	844, 845, 878, 1601
BssT1I	CCWWGG	2 cut(s)	878, 1601
Bst2UI	CCWGG	4 cut(s)	585, 1160, 1884, 1929
Bst4CI	ACNGT	5 cut(s)	1011, 1300, 1339, 1762, 2440
Bst6I	CTCTTC	3 cut(s)	137, 375, 1975
BstAFI	CTTAAG	1 cut(s)	1570
BstBAI	YACGTR	1 cut(s)	1034
BstBI	TTCGAA	1 cut(s)	137
BstC8I	GCNNGC	2 cut(s)	477, 679
BstDEI	CTNAG	3 cut(s)	689, 968, 1256
BstHHI	GCGC	1 cut(s)	941
BstMAI	GTCTC	5 cut(s)	844, 1838, 2173, 2207, 2268
BstMWI	GCNNNNNNNGC	2 cut(s)	121, 1633
BstNI	CCWGG	4 cut(s)	585, 1160, 1884, 1929
BstNSI	RCATGY	2 cut(s)	842, 1391
BstSCI	CCNGG	8 cut(s)	487, 583, 843, 844, 1158, 1329, 1882, 1927
BstSFI	CTRYAG	3 cut(s)	704, 1693, 1812
BstV1I	GCAGC	5 cut(s)	1396, 1679, 1795, 1798, 2441
BstV2I	GAAGAC	3 cut(s)	39, 270, 1763
BstX2I	RGATCY	8 cut(s)	105, 1021, 1252, 1879, 1924, 1984, 2048, 2395
BstXI	CCANNNNNNTGG	2 cut(s)	220, 832
BstYI	RGATCY	8 cut(s)	105, 1021, 1252, 1879, 1924, 1984, 2048, 2395
BsuRI	GGCC	4 cut(s)	202, 1326, 2283, 2357
BtgZI	GCGATG	1 cut(s)	1242
BtrI	CACGTC	1 cut(s)	944
BtsI	GCAGTG	2 cut(s)	1564, 2431
BtsIMutI	CAGTG	3 cut(s)	1564, 2431, 2445
Cac8I	GCNNGC	2 cut(s)	477, 679
CciI	TCATGA	1 cut(s)	328
CfoI	GCGC	1 cut(s)	941
Cfr13I	GGNCC	5 cut(s)	499, 817, 1679, 2083, 2443
Cfr9I	CCCGGG	1 cut(s)	844
Csp6I	GTAC	3 cut(s)	1001, 1007, 2193
CviQI	GTAC	3 cut(s)	1001, 1007, 2193
DdeI	CTNAG	3 cut(s)	689, 968, 1256
DraI	TTTAAA	2 cut(s)	1078, 1375
EaeI	YGGCCR	1 cut(s)	2281
Eam1104I	CTCTTC	3 cut(s)	137, 375, 1975
EarI	CTCTTC	3 cut(s)	137, 375, 1975
EciI	GGCGGA	1 cut(s)	182
Eco130I	CCWWGG	2 cut(s)	878, 1601
Eco147I	AGGCCT	2 cut(s)	202, 2357
Eco31I	GGTCTC	1 cut(s)	1838
Eco47I	GGWCC	5 cut(s)	499, 817, 1679, 2083, 2443
Eco57I	CTGAAG	2 cut(s)	1346, 1551
Eco72I	CACGTG	1 cut(s)	1034
Eco88I	CYCGRG	3 cut(s)	844, 1993, 2053
EcoO109I	RGGNCCY	4 cut(s)	499, 817, 1679, 2083
EcoRI	GAATTC	3 cut(s)	88, 133, 1154
EcoRII	CCWGG	4 cut(s)	583, 1158, 1882, 1927
EcoT14I	CCWWGG	2 cut(s)	878, 1601
ErhI	CCWWGG	2 cut(s)	878, 1601
FalI	AAGNNNNNCTT	2 cut(s)	804, 836
FaqI	GGGAC	7 cut(s)	827, 830, 1284, 1309, 1665, 1732, 2350
FauI	CCCGC	1 cut(s)	42
FauNDI	CATATG	1 cut(s)	2269
FbaI	TGATCA	4 cut(s)	325, 1444, 1461, 1510
Fnu4HI	GCNGC	7 cut(s)	165, 552, 1385, 1693, 1809, 1812, 2430
Fsp4HI	GCNGC	7 cut(s)	165, 552, 1385, 1693, 1809, 1812, 2430
FspBI	CTAG	5 cut(s)	983, 1590, 1676, 1742, 2256
GlaI	GCGC	1 cut(s)	940
GluI	GCNGC	7 cut(s)	165, 552, 1385, 1693, 1809, 1812, 2430
GsaI	CCCAGC	1 cut(s)	998
GsuI	CTGGAG	4 cut(s)	606, 1632, 1905, 1950
HaeIII	GGCC	4 cut(s)	202, 1326, 2283, 2357
HapII	CCGG	5 cut(s)	305, 368, 489, 845, 1331
HhaI	GCGC	1 cut(s)	941
Hin6I	GCGC	1 cut(s)	939
HinP1I	GCGC	1 cut(s)	939
HincII	GTYRAC	1 cut(s)	1412
HindII	GTYRAC	1 cut(s)	1412
HindIII	AAGCTT	4 cut(s)	631, 648, 675, 1213
HpaII	CCGG	5 cut(s)	305, 368, 489, 845, 1331
HphI	GGTGA	5 cut(s)	287, 529, 1184, 1456, 1556
Hpy166II	GTNNAC	4 cut(s)	1001, 1412, 2143, 2443
Hpy188I	TCNGA	9 cut(s)	94, 690, 1108, 1257, 1365, 1477, 1510, 1792, 2305
Hpy8I	GTNNAC	4 cut(s)	1001, 1412, 2143, 2443
HpyCH4III	ACNGT	5 cut(s)	1011, 1300, 1339, 1762, 2440
HpyCH4IV	ACGT	4 cut(s)	943, 1033, 1892, 2406
HpyF10VI	GCNNNNNNNGC	2 cut(s)	121, 1633
HpyF3I	CTNAG	3 cut(s)	689, 968, 1256
HpySE526I	ACGT	4 cut(s)	943, 1033, 1892, 2406
HspAI	GCGC	1 cut(s)	939
Kpn2I	TCCGGA	1 cut(s)	367
Ksp22I	TGATCA	4 cut(s)	325, 1444, 1461, 1510
LmnI	GCTCC	4 cut(s)	1418, 1656, 1886, 1931
Lsp1109I	GCAGC	5 cut(s)	1396, 1679, 1795, 1798, 2441
LweI	GCATC	4 cut(s)	36, 1219, 1468, 1943
MaeI	CTAG	5 cut(s)	983, 1590, 1676, 1742, 2256
MaeII	ACGT	4 cut(s)	943, 1033, 1892, 2406
MaeIII	GTNAC	2 cut(s)	1240, 1816
MfeI	CAATTG	1 cut(s)	609
MflI	RGATCY	8 cut(s)	105, 1021, 1252, 1879, 1924, 1984, 2048, 2395
MhlI	GDGCHC	1 cut(s)	1868
MlsI	TGGCCA	1 cut(s)	2283
MluNI	TGGCCA	1 cut(s)	2283
MlyI	GAGTC	7 cut(s)	1534, 1553, 1754, 1951, 1966, 2030, 2372
MmeI	TCCRAC	1 cut(s)	448
Mox20I	TGGCCA	1 cut(s)	2283
MroI	TCCGGA	1 cut(s)	367
MroXI	GAANNNNTTC	1 cut(s)	632
MscI	TGGCCA	1 cut(s)	2283
MslI	CAYNNNNRTG	3 cut(s)	218, 333, 1871
Msp20I	TGGCCA	1 cut(s)	2283
MspA1I	CMGCKG	1 cut(s)	994
MspCI	CTTAAG	1 cut(s)	1570
MspI	CCGG	5 cut(s)	305, 368, 489, 845, 1331
MspR9I	CCNGG	8 cut(s)	489, 585, 845, 846, 1160, 1331, 1884, 1929
MunI	CAATTG	1 cut(s)	609
MvaI	CCWGG	4 cut(s)	585, 1160, 1884, 1929
MwoI	GCNNNNNNNGC	2 cut(s)	121, 1633
NciI	CCSGG	4 cut(s)	489, 845, 846, 1331
NdeI	CATATG	1 cut(s)	2269
NlaIV	GGNNCC	7 cut(s)	501, 818, 1658, 1681, 2085, 2397, 2445
NmeAIII	GCCGAG	1 cut(s)	1685
NspI	RCATGY	2 cut(s)	842, 1391
NspV	TTCGAA	1 cut(s)	137
PagI	TCATGA	1 cut(s)	328
PceI	AGGCCT	2 cut(s)	202, 2357
PcsI	WCGNNNNNNNCGW	1 cut(s)	949
PdmI	GAANNNNTTC	1 cut(s)	632
PfeI	GAWTC	5 cut(s)	914, 932, 1793, 2108, 2315
PflMI	CCANNNNNTGG	1 cut(s)	2010
PfoI	TCCNGGA	5 cut(s)	583, 1158, 1329, 1882, 1927
PkrI	GCNGC	7 cut(s)	166, 553, 1386, 1694, 1810, 1813, 2431
PleI	GAGTC	7 cut(s)	1533, 1553, 1753, 1951, 1966, 2030, 2371
PmaCI	CACGTG	1 cut(s)	1034
PmlI	CACGTG	1 cut(s)	1034
PpsI	GAGTC	7 cut(s)	1533, 1553, 1753, 1951, 1966, 2030, 2371
Ppu21I	YACGTR	1 cut(s)	1034
PpuMI	RGGWCCY	4 cut(s)	499, 817, 1679, 2083
Psp5II	RGGWCCY	4 cut(s)	499, 817, 1679, 2083
Psp6I	CCWGG	4 cut(s)	583, 1158, 1882, 1927
PspCI	CACGTG	1 cut(s)	1034
PspFI	CCCAGC	1 cut(s)	994
PspGI	CCWGG	4 cut(s)	583, 1158, 1882, 1927
PspN4I	GGNNCC	7 cut(s)	501, 818, 1658, 1681, 2085, 2397, 2445
PspPI	GGNCC	5 cut(s)	499, 817, 1679, 2083, 2443
PspPPI	RGGWCCY	4 cut(s)	499, 817, 1679, 2083
PstI	CTGCAG	3 cut(s)	708, 1697, 1816
PsuI	RGATCY	8 cut(s)	105, 1021, 1252, 1879, 1924, 1984, 2048, 2395
PvuII	CAGCTG	1 cut(s)	994
RsaI	GTAC	3 cut(s)	1002, 1008, 2194
RsaNI	GTAC	3 cut(s)	1001, 1007, 2193
RseI	CAYNNNNRTG	3 cut(s)	218, 333, 1871
SatI	GCNGC	7 cut(s)	165, 552, 1385, 1693, 1809, 1812, 2430
Sau96I	GGNCC	5 cut(s)	499, 817, 1679, 2083, 2443
ScaI	AGTACT	1 cut(s)	2194
SchI	GAGTC	7 cut(s)	1534, 1553, 1754, 1951, 1966, 2030, 2372
ScrFI	CCNGG	8 cut(s)	489, 585, 845, 846, 1160, 1331, 1884, 1929
SduI	GDGCHC	1 cut(s)	1868
SfaNI	GCATC	4 cut(s)	36, 1219, 1468, 1943
SfcI	CTRYAG	3 cut(s)	704, 1693, 1812
SfuI	TTCGAA	1 cut(s)	137
SinI	GGWCC	5 cut(s)	499, 817, 1679, 2083, 2443
SmaI	CCCGGG	1 cut(s)	846
SmiMI	CAYNNNNRTG	3 cut(s)	218, 333, 1871
SmlI	CTYRAG	2 cut(s)	1570, 2330
SmoI	CTYRAG	2 cut(s)	1570, 2330
SseBI	AGGCCT	2 cut(s)	202, 2357
SsiI	CCGC	8 cut(s)	49, 115, 164, 167, 189, 339, 551, 1313
SspMI	CTAG	5 cut(s)	983, 1590, 1676, 1742, 2256
StuI	AGGCCT	2 cut(s)	202, 2357
StyD4I	CCNGG	8 cut(s)	487, 583, 843, 844, 1158, 1329, 1882, 1927
StyI	CCWWGG	2 cut(s)	878, 1601
TaaI	ACNGT	5 cut(s)	1011, 1300, 1339, 1762, 2440
TaiI	ACGT	4 cut(s)	946, 1036, 1895, 2409
TaqI	TCGA	4 cut(s)	5, 131, 137, 2205
TatI	WGTACW	2 cut(s)	1006, 2192
TauI	GCSGC	2 cut(s)	167, 554
TfiI	GAWTC	5 cut(s)	914, 932, 1793, 2108, 2315
TscAI	CASTG	3 cut(s)	1571, 2431, 2445
TseI	GCWGC	5 cut(s)	1384, 1692, 1808, 1811, 2429
TspGWI	ACGGA	5 cut(s)	148, 476, 1259, 1263, 1661
TspMI	CCCGGG	1 cut(s)	844
TspRI	CASTG	3 cut(s)	1571, 2431, 2445
Van91I	CCANNNNNTGG	1 cut(s)	2010
Vha464I	CTTAAG	1 cut(s)	1570
VpaK11BI	GGWCC	5 cut(s)	499, 817, 1679, 2083, 2443
XapI	RAATTY	4 cut(s)	88, 133, 1154, 2306
XceI	RCATGY	2 cut(s)	842, 1391
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1166
XmaI	CCCGGG	1 cut(s)	844
XmnI	GAANNNNTTC	1 cut(s)	632
XspI	CTAG	5 cut(s)	983, 1590, 1676, 1742, 2256
ZrmI	AGTACT	1 cut(s)	2194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.