Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007099

Physical Location & Seq

Genomic Coordinates Forward (+)

1788738 .. 1789992

Gene Structure 1255 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G05950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGACGACGAGTATTCACATCACAGCTCTCGACGGAATCGTCAACGTGAACTCACTCTTCACACTCGCCGTATTCATCGGATTAGCTTGGAACCCTACCGATCCAGACAACAGCCTCGTAACCGACCCTAATTGCGTCCCCACAGCTCGTATGGCTGAGAATCTCGTCGCCTTCCATGTGTACTCTTTCGCATCATTCCTATTCTCAAGTCTCATCGCTCTAGGTCTCAAACAAGCAATGAGGCTCAACATAGCTTCTTCGTTTCACATCTCTACTCGAATCGATCCTGTGGTTTACTATGTGAACAAGACGGCTCTTAGATTTGGGATGGTTACATCCGGTTTGGGATCGGTTTGTGGATGTGGGTTTCTCATGTTGGCTTTGATTAATGTTGTTCAGATCAAGCTTGGGACTTTGGGCTGTGGTGCTAGTGGTCATACTTATGCAGCTGTTGTGCCGCTTGTGATTCTGGTTCCTTCTGCACTTTTCATCTATGTTTCTCTTATGTTATATGCTTTTACTCGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

175

Amino Acids

18.74

Weight (kDa)

8.41

Isoelectric Point (pI)

28.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007099)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05950
fragaria_vesca	FvH4_3g37210 FvH4_7g23601
malus_domestica	MD01G1141800.v1.1 MD11G1091000.v1.1
prunus_persica	Prupe.2G242900_v2.0.a1 Prupe.6G067200_v2.0.a1
pyrus_communis	pycom01g16210 pycom11g07570
rosa_chinensis	RchiOBHm_Chr1g0368851 RchiOBHm_Chr5g0066951
rosa_laevigata	RLG00000027182 RLG00000027184 RLG00000027186 RLG00000035896
rosa_multiflora	Rmu_sc0008378.1_g000006 Rmu_sc0012799.1_g000008 Rmu_sc0030248.1_g000001
rosa_roxburghii	Rroxscaffold_1G00014170
rosa_rugosa	Rorug01G0345300 Rorug05G0380000
rosa_samantha	Rh1AG352400 Rh5BG456700 Rh5CG478800
rosa_wichuraiana	Rw5G041120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	38
AciI	CCGC	1 cut(s)	458
AclWI	GGATC	3 cut(s)	95, 278, 355
AfaI	GTAC	1 cut(s)	182
AluBI	AGCT	6 cut(s)	26, 86, 146, 254, 406, 449
AluI	AGCT	6 cut(s)	26, 86, 146, 254, 406, 449
Alw26I	GTCTC	2 cut(s)	215, 230
AlwI	GGATC	3 cut(s)	95, 278, 355
ApeKI	GCWGC	1 cut(s)	446
AseI	ATTAAT	1 cut(s)	387
BbvI	GCAGC	1 cut(s)	458
BccI	CCATC	1 cut(s)	322
BceAI	ACGGC	2 cut(s)	53, 327
BcoDI	GTCTC	2 cut(s)	215, 230
BfaI	CTAG	2 cut(s)	221, 429
BisI	GCNGC	2 cut(s)	447, 458
BlsI	GCNGC	2 cut(s)	448, 459
BmiI	GGNNCC	2 cut(s)	92, 474
BmsI	GCATC	1 cut(s)	200
BpuEI	CTTGAG	1 cut(s)	190
Bsa29I	ATCGAT	1 cut(s)	282
BsaI	GGTCTC	1 cut(s)	230
BsaWI	WCCGGW	1 cut(s)	338
Bse3DI	GCAATG	1 cut(s)	243
BseCI	ATCGAT	1 cut(s)	282
BseGI	GGATG	3 cut(s)	333, 335, 365
BseMI	GCAATG	1 cut(s)	243
BseMII	CTCAG	1 cut(s)	147
BseXI	GCAGC	1 cut(s)	458
BsgI	GTGCAG	1 cut(s)	465
BshVI	ATCGAT	1 cut(s)	282
BsiSI	CCGG	1 cut(s)	339
BslFI	GGGAC	2 cut(s)	122, 424
BsmAI	GTCTC	2 cut(s)	215, 230
BsmFI	GGGAC	2 cut(s)	122, 424
Bso31I	GGTCTC	1 cut(s)	230
Bsp143I	GATC	4 cut(s)	100, 283, 347, 399
BspACI	CCGC	1 cut(s)	458
BspCNI	CTCAG	1 cut(s)	148
BspDI	ATCGAT	1 cut(s)	282
BspLI	GGNNCC	2 cut(s)	92, 474
BspPI	GGATC	3 cut(s)	95, 278, 355
BspTNI	GGTCTC	1 cut(s)	230
BsrDI	GCAATG	1 cut(s)	243
BssMI	GATC	4 cut(s)	100, 283, 347, 399
Bst6I	CTCTTC	1 cut(s)	62
BstDEI	CTNAG	2 cut(s)	156, 317
BstF5I	GGATG	3 cut(s)	333, 335, 365
BstKTI	GATC	4 cut(s)	103, 286, 350, 402
BstMAI	GTCTC	2 cut(s)	215, 230
BstMBI	GATC	4 cut(s)	100, 283, 347, 399
BstMWI	GCNNNNNNNGC	1 cut(s)	152
BstV1I	GCAGC	1 cut(s)	458
Bsu15I	ATCGAT	1 cut(s)	282
BsuTUI	ATCGAT	1 cut(s)	282
BtgZI	GCGATG	1 cut(s)	199
BtsCI	GGATG	3 cut(s)	333, 335, 365
ClaI	ATCGAT	1 cut(s)	282
CseI	GACGC	1 cut(s)	124
Csp6I	GTAC	1 cut(s)	181
CviAII	CATG	2 cut(s)	176, 373
CviQI	GTAC	1 cut(s)	181
DdeI	CTNAG	2 cut(s)	156, 317
DpnI	GATC	4 cut(s)	102, 285, 349, 401
DpnII	GATC	4 cut(s)	100, 283, 347, 399
DrdI	GACNNNNNNGTC	1 cut(s)	38
DseDI	GACNNNNNNGTC	1 cut(s)	38
Eam1104I	CTCTTC	1 cut(s)	62
EarI	CTCTTC	1 cut(s)	62
Eco31I	GGTCTC	1 cut(s)	230
FaeI	CATG	2 cut(s)	179, 376
FaqI	GGGAC	2 cut(s)	122, 424
FatI	CATG	2 cut(s)	175, 372
Fnu4HI	GCNGC	2 cut(s)	447, 458
FokI	GGATG	3 cut(s)	322, 340, 372
Fsp4HI	GCNGC	2 cut(s)	447, 458
FspBI	CTAG	2 cut(s)	221, 429
GluI	GCNGC	2 cut(s)	447, 458
HapII	CCGG	1 cut(s)	339
HgaI	GACGC	1 cut(s)	124
Hin1II	CATG	2 cut(s)	179, 376
HincII	GTYRAC	1 cut(s)	43
HindII	GTYRAC	1 cut(s)	43
HindIII	AAGCTT	1 cut(s)	404
HinfI	GANTC	4 cut(s)	36, 160, 279, 466
HpaII	CCGG	1 cut(s)	339
Hpy166II	GTNNAC	5 cut(s)	43, 49, 181, 295, 304
Hpy188I	TCNGA	2 cut(s)	80, 399
Hpy188III	TCNNGA	2 cut(s)	29, 104
Hpy8I	GTNNAC	5 cut(s)	43, 49, 181, 295, 304
Hpy99I	CGWCG	3 cut(s)	10, 35, 170
HpyAV	CCTTC	2 cut(s)	181, 486
HpyCH4IV	ACGT	1 cut(s)	45
HpyCH4V	TGCA	2 cut(s)	446, 482
HpyF10VI	GCNNNNNNNGC	1 cut(s)	152
HpyF3I	CTNAG	2 cut(s)	156, 317
HpySE526I	ACGT	1 cut(s)	45
Hsp92II	CATG	2 cut(s)	179, 376
Kzo9I	GATC	4 cut(s)	100, 283, 347, 399
LpnPI	CCDG	4 cut(s)	117, 300, 352, 455
Lsp1109I	GCAGC	1 cut(s)	458
LweI	GCATC	1 cut(s)	200
MaeI	CTAG	2 cut(s)	221, 429
MaeII	ACGT	1 cut(s)	45
MaeIII	GTNAC	2 cut(s)	118, 331
MalI	GATC	4 cut(s)	102, 285, 349, 401
MboI	GATC	4 cut(s)	100, 283, 347, 399
MboII	GAAGA	2 cut(s)	49, 249
MluCI	AATT	1 cut(s)	130
MnlI	CCTC	2 cut(s)	125, 234
MseI	TTAA	1 cut(s)	387
MslI	CAYNNNNRTG	1 cut(s)	441
MspA1I	CMGCKG	1 cut(s)	449
MspI	CCGG	1 cut(s)	339
MwoI	GCNNNNNNNGC	1 cut(s)	152
NdeII	GATC	4 cut(s)	100, 283, 347, 399
NlaIII	CATG	2 cut(s)	179, 376
NlaIV	GGNNCC	2 cut(s)	92, 474
PcsI	WCGNNNNNNNCGW	1 cut(s)	36
PfeI	GAWTC	4 cut(s)	36, 160, 279, 466
PkrI	GCNGC	2 cut(s)	448, 459
PshBI	ATTAAT	1 cut(s)	387
PspN4I	GGNNCC	2 cut(s)	92, 474
PvuII	CAGCTG	1 cut(s)	449
RsaI	GTAC	1 cut(s)	182
RsaNI	GTAC	1 cut(s)	181
RseI	CAYNNNNRTG	1 cut(s)	441
SaqAI	TTAA	1 cut(s)	387
SatI	GCNGC	2 cut(s)	447, 458
Sau3AI	GATC	4 cut(s)	100, 283, 347, 399
SetI	ASST	8 cut(s)	28, 48, 88, 148, 226, 256, 408, 451
SfaNI	GCATC	1 cut(s)	200
SmiMI	CAYNNNNRTG	1 cut(s)	441
SmlI	CTYRAG	1 cut(s)	205
SmoI	CTYRAG	1 cut(s)	205
Sse9I	AATT	1 cut(s)	130
SsiI	CCGC	1 cut(s)	458
SspMI	CTAG	2 cut(s)	221, 429
TaiI	ACGT	1 cut(s)	48
TaqI	TCGA	3 cut(s)	30, 277, 282
TasI	AATT	1 cut(s)	130
TatI	WGTACW	1 cut(s)	180
TauI	GCSGC	1 cut(s)	460
TfiI	GAWTC	4 cut(s)	36, 160, 279, 466
Tru1I	TTAA	1 cut(s)	387
Tru9I	TTAA	1 cut(s)	387
TseI	GCWGC	1 cut(s)	446
TspDTI	ATGAA	2 cut(s)	64, 478
TspGWI	ACGGA	1 cut(s)	48
VspI	ATTAAT	1 cut(s)	387
XcmI	CCANNNNNNNNNTGG	1 cut(s)	148
XspI	CTAG	2 cut(s)	221, 429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.