Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0007099

Physical Location & Seq

Genomic Coordinates Reverse (-)

72472759 .. 72473331

Gene Structure 573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G041120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGTCTGACGTGTCACGCCGGACAATACCCACAACCCGCATTCACATAATGGCCCTAGACGGTATAGTCAATGTGAACTCACTTTTCTCATTTGCTCTCTTCATAGGCCTCACTTGGTACCCTGCCATCGACATCAACTCCATGCTCCTCGGCTCCAACACGGCCTGCGCTGCCGGTACCGATACAGCGGAGGGACTCATCTCATTCCACGTGTACTCTTTCAGCTGCTTTCTCTTCTCCAGCCTCATTGCCTTGGCTCTCAAGCAAGCCATCAAGATAAGCCAAAGTGGTTCTAGTAGTGGAAATGGTGGCTCGGATTCCGAGTTGCTTGGTGCCAACATGGGCCATGTTAACCAGGTGGGTTTGCGGGTCGGTACGCTGGTCTCGGCATTCGGGTCAGTTTTCGGATGCGGGTTCTTAATGATGGCCTTGGTGGACTTGGTTCAGATCAAATTGGGGAGGTTGAGTTGTGGGGATTTGTATACTTTCGCTGCCATTGGTCCTTTGGTGACTTTGGTTCCTTTGGCTCTTGTGATCTATGTTTTTCTTGTGCTTCATGCCTTTACTCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_trans_1_4 Glyco_transf_4 Glycos_transf_1

Protein Analysis

190

Amino Acids

20.06

Weight (kDa)

6.88

Isoelectric Point (pI)

29.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007099)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05950
fragaria_vesca	FvH4_3g37210 FvH4_7g23601
malus_domestica	MD01G1141800.v1.1 MD11G1091000.v1.1
prunus_persica	Prupe.2G242900_v2.0.a1 Prupe.6G067200_v2.0.a1
pyrus_communis	pycom01g16210 pycom11g07570
rosa_chinensis	RchiOBHm_Chr1g0368851 RchiOBHm_Chr5g0066951
rosa_laevigata	RLG00000027182 RLG00000027184 RLG00000027186 RLG00000035896
rosa_multiflora	Rmu_sc0008378.1_g000006 Rmu_sc0012799.1_g000008 Rmu_sc0030248.1_g000001
rosa_roxburghii	Rroxscaffold_1G00014170
rosa_rugosa	Rorug01G0345300 Rorug05G0380000
rosa_samantha	Rh1AG352400 Rh5BG456700 Rh5CG478800
rosa_wichuraiana	Rw5G041120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	65
Acc65I	GGTACC	2 cut(s)	117, 176
AccB1I	GGYRCC	3 cut(s)	117, 176, 332
AccI	GTMKAC	1 cut(s)	482
AciI	CCGC	4 cut(s)	37, 188, 367, 411
AcvI	CACGTG	1 cut(s)	211
AfaI	GTAC	4 cut(s)	119, 178, 215, 376
AflIII	ACRYGT	2 cut(s)	9, 210
AjiI	CACGTC	1 cut(s)	10
AjnI	CCWGG	1 cut(s)	354
AluBI	AGCT	1 cut(s)	225
AluI	AGCT	1 cut(s)	225
Alw26I	GTCTC	1 cut(s)	388
AoxI	GGCC	5 cut(s)	51, 106, 162, 343, 426
ApeKI	GCWGC	3 cut(s)	170, 225, 491
Asp718I	GGTACC	2 cut(s)	117, 176
AspLEI	GCGC	1 cut(s)	170
AspS9I	GGNCC	3 cut(s)	52, 343, 500
AsuHPI	GGTGA	1 cut(s)	520
AvaII	GGWCC	1 cut(s)	500
BaeI	ACNNNNGTAYC	2 cut(s)	366, 399
BanI	GGYRCC	3 cut(s)	117, 176, 332
BbrPI	CACGTG	1 cut(s)	211
BbvI	GCAGC	3 cut(s)	157, 212, 478
BccI	CCATC	3 cut(s)	134, 278, 418
BceAI	ACGGC	1 cut(s)	177
BciT130I	CCWGG	1 cut(s)	356
BcoDI	GTCTC	1 cut(s)	388
BfaI	CTAG	2 cut(s)	56, 294
BisI	GCNGC	3 cut(s)	171, 226, 492
BlsI	GCNGC	3 cut(s)	172, 227, 493
Bme1390I	CCNGG	1 cut(s)	356
Bme18I	GGWCC	1 cut(s)	500
BmgBI	CACGTC	1 cut(s)	10
BmgT120I	GGNCC	3 cut(s)	52, 343, 500
BmiI	GGNNCC	5 cut(s)	119, 154, 178, 334, 519
BmrFI	CCNGG	1 cut(s)	356
BmsI	GCATC	1 cut(s)	398
BpmI	CTGGAG	1 cut(s)	223
BpuEI	CTTGAG	1 cut(s)	245
BsaAI	YACGTR	1 cut(s)	211
BsaI	GGTCTC	1 cut(s)	388
BsaJI	CCNNGG	3 cut(s)	148, 252, 429
BsaXI	ACNNNNNCTCC	4 cut(s)	122, 152, 451, 481
Bse118I	RCCGGY	1 cut(s)	173
Bse3DI	GCAATG	1 cut(s)	246
BseBI	CCWGG	1 cut(s)	356
BseDI	CCNNGG	3 cut(s)	148, 252, 429
BseGI	GGATG	1 cut(s)	413
BseMI	GCAATG	1 cut(s)	246
BseRI	GAGGAG	1 cut(s)	137
BseXI	GCAGC	3 cut(s)	157, 212, 478
BshFI	GGCC	5 cut(s)	53, 108, 164, 345, 428
BshNI	GGYRCC	3 cut(s)	117, 176, 332
BsiSI	CCGG	2 cut(s)	19, 174
BslFI	GGGAC	1 cut(s)	207
BsmAI	GTCTC	1 cut(s)	388
BsmFI	GGGAC	1 cut(s)	207
BsmI	GAATGC	2 cut(s)	39, 389
BsnI	GGCC	5 cut(s)	53, 108, 164, 345, 428
Bso31I	GGTCTC	1 cut(s)	388
Bsp143I	GATC	2 cut(s)	447, 534
BspACI	CCGC	4 cut(s)	37, 188, 367, 411
BspANI	GGCC	5 cut(s)	53, 108, 164, 345, 428
BspLI	GGNNCC	5 cut(s)	119, 154, 178, 334, 519
BspT107I	GGYRCC	3 cut(s)	117, 176, 332
BspTNI	GGTCTC	1 cut(s)	388
BsrDI	GCAATG	1 cut(s)	246
BsrFI	RCCGGY	1 cut(s)	173
BssAI	RCCGGY	1 cut(s)	173
BssECI	CCNNGG	3 cut(s)	148, 252, 429
BssMI	GATC	2 cut(s)	447, 534
BssNAI	GTATAC	1 cut(s)	483
BssT1I	CCWWGG	2 cut(s)	252, 429
Bst1107I	GTATAC	1 cut(s)	483
Bst2UI	CCWGG	1 cut(s)	356
Bst4CI	ACNGT	1 cut(s)	62
Bst6I	CTCTTC	2 cut(s)	104, 239
BstBAI	YACGTR	1 cut(s)	211
BstC8I	GCNNGC	2 cut(s)	166, 267
BstF5I	GGATG	1 cut(s)	413
BstHHI	GCGC	1 cut(s)	170
BstKTI	GATC	2 cut(s)	450, 537
BstMAI	GTCTC	1 cut(s)	388
BstMBI	GATC	2 cut(s)	447, 534
BstMWI	GCNNNNNNNGC	1 cut(s)	170
BstNI	CCWGG	1 cut(s)	356
BstSCI	CCNGG	1 cut(s)	354
BstV1I	GCAGC	3 cut(s)	157, 212, 478
BstZ17I	GTATAC	1 cut(s)	483
BsuRI	GGCC	5 cut(s)	53, 108, 164, 345, 428
BtrI	CACGTC	1 cut(s)	10
BtsCI	GGATG	1 cut(s)	413
Cac8I	GCNNGC	2 cut(s)	166, 267
CfoI	GCGC	1 cut(s)	170
Cfr10I	RCCGGY	1 cut(s)	173
Cfr13I	GGNCC	3 cut(s)	52, 343, 500
CsiI	ACCWGGT	1 cut(s)	354
Csp6I	GTAC	4 cut(s)	118, 177, 214, 375
CviAII	CATG	4 cut(s)	142, 340, 347, 557
CviQI	GTAC	4 cut(s)	118, 177, 214, 375
DpnI	GATC	2 cut(s)	449, 536
DpnII	GATC	2 cut(s)	447, 534
DrdI	GACNNNNNNGTC	1 cut(s)	65
DseDI	GACNNNNNNGTC	1 cut(s)	65
Eam1104I	CTCTTC	2 cut(s)	104, 239
EarI	CTCTTC	2 cut(s)	104, 239
Eco130I	CCWWGG	2 cut(s)	252, 429
Eco147I	AGGCCT	1 cut(s)	108
Eco31I	GGTCTC	1 cut(s)	388
Eco47I	GGWCC	1 cut(s)	500
Eco72I	CACGTG	1 cut(s)	211
EcoRII	CCWGG	1 cut(s)	354
EcoT14I	CCWWGG	2 cut(s)	252, 429
ErhI	CCWWGG	2 cut(s)	252, 429
FaeI	CATG	4 cut(s)	145, 343, 350, 560
FaiI	YATR	9 cut(s)	47, 65, 104, 143, 341, 348, 483, 540, 558
FaqI	GGGAC	1 cut(s)	207
FatI	CATG	4 cut(s)	141, 339, 346, 556
FauI	CCCGC	3 cut(s)	44, 360, 404
FblI	GTMKAC	1 cut(s)	482
Fnu4HI	GCNGC	3 cut(s)	171, 226, 492
FokI	GGATG	1 cut(s)	420
Fsp4HI	GCNGC	3 cut(s)	171, 226, 492
FspBI	CTAG	2 cut(s)	56, 294
GlaI	GCGC	1 cut(s)	169
GluI	GCNGC	3 cut(s)	171, 226, 492
GsuI	CTGGAG	1 cut(s)	223
HaeIII	GGCC	5 cut(s)	53, 108, 164, 345, 428
HapII	CCGG	2 cut(s)	19, 174
HhaI	GCGC	1 cut(s)	170
Hin1II	CATG	4 cut(s)	145, 343, 350, 560
Hin6I	GCGC	1 cut(s)	168
HinP1I	GCGC	1 cut(s)	168
HincII	GTYRAC	1 cut(s)	352
HindII	GTYRAC	1 cut(s)	352
HinfI	GANTC	2 cut(s)	195, 317
HpaI	GTTAAC	1 cut(s)	352
HpaII	CCGG	2 cut(s)	19, 174
HphI	GGTGA	1 cut(s)	520
Hpy166II	GTNNAC	5 cut(s)	76, 214, 352, 436, 483
Hpy188I	TCNGA	5 cut(s)	7, 316, 322, 407, 447
Hpy188III	TCNNGA	1 cut(s)	274
Hpy8I	GTNNAC	5 cut(s)	76, 214, 352, 436, 483
HpyCH4III	ACNGT	1 cut(s)	62
HpyCH4IV	ACGT	2 cut(s)	9, 210
HpyF10VI	GCNNNNNNNGC	1 cut(s)	170
HpySE526I	ACGT	2 cut(s)	9, 210
Hsp92II	CATG	4 cut(s)	145, 343, 350, 560
HspAI	GCGC	1 cut(s)	168
KpnI	GGTACC	2 cut(s)	121, 180
KspAI	GTTAAC	1 cut(s)	352
Kzo9I	GATC	2 cut(s)	447, 534
LmnI	GCTCC	2 cut(s)	150, 158
LpnPI	CCDG	8 cut(s)	32, 135, 178, 187, 253, 341, 365, 368
Lsp1109I	GCAGC	3 cut(s)	157, 212, 478
LweI	GCATC	1 cut(s)	398
MabI	ACCWGGT	1 cut(s)	354
MaeI	CTAG	2 cut(s)	56, 294
MaeII	ACGT	2 cut(s)	9, 210
MaeIII	GTNAC	2 cut(s)	12, 508
MalI	GATC	2 cut(s)	449, 536
MboI	GATC	2 cut(s)	447, 534
MboII	GAAGA	2 cut(s)	91, 226
MluCI	AATT	1 cut(s)	452
MlyI	GAGTC	1 cut(s)	189
MmeI	TCCRAC	1 cut(s)	180
MnlI	CCTC	5 cut(s)	119, 158, 184, 254, 453
MseI	TTAA	2 cut(s)	351, 419
MspA1I	CMGCKG	2 cut(s)	188, 225
MspI	CCGG	2 cut(s)	19, 174
MspR9I	CCNGG	1 cut(s)	356
Mva1269I	GAATGC	2 cut(s)	39, 389
MvaI	CCWGG	1 cut(s)	356
MwoI	GCNNNNNNNGC	1 cut(s)	170
NdeII	GATC	2 cut(s)	447, 534
NlaIII	CATG	4 cut(s)	145, 343, 350, 560
NlaIV	GGNNCC	5 cut(s)	119, 154, 178, 334, 519
NmeAIII	GCCGAG	2 cut(s)	129, 365
NmuCI	GTSAC	2 cut(s)	12, 508
PceI	AGGCCT	1 cut(s)	108
PctI	GAATGC	2 cut(s)	39, 389
PfeI	GAWTC	1 cut(s)	317
PkrI	GCNGC	3 cut(s)	172, 227, 493
PleI	GAGTC	1 cut(s)	189
PmaCI	CACGTG	1 cut(s)	211
PmlI	CACGTG	1 cut(s)	211
PpsI	GAGTC	1 cut(s)	189
Ppu21I	YACGTR	1 cut(s)	211
Psp6I	CCWGG	1 cut(s)	354
PspCI	CACGTG	1 cut(s)	211
PspGI	CCWGG	1 cut(s)	354
PspN4I	GGNNCC	5 cut(s)	119, 154, 178, 334, 519
PspPI	GGNCC	3 cut(s)	52, 343, 500
PvuII	CAGCTG	1 cut(s)	225
RsaI	GTAC	4 cut(s)	119, 178, 215, 376
RsaNI	GTAC	4 cut(s)	118, 177, 214, 375
SaqAI	TTAA	2 cut(s)	351, 419
SatI	GCNGC	3 cut(s)	171, 226, 492
Sau3AI	GATC	2 cut(s)	447, 534
Sau96I	GGNCC	3 cut(s)	52, 343, 500
SchI	GAGTC	1 cut(s)	189
ScrFI	CCNGG	1 cut(s)	356
SetI	ASST	5 cut(s)	12, 213, 227, 360, 464
SexAI	ACCWGGT	1 cut(s)	354
SfaNI	GCATC	1 cut(s)	398
SinI	GGWCC	1 cut(s)	500
SmlI	CTYRAG	1 cut(s)	260
SmoI	CTYRAG	1 cut(s)	260
Sse9I	AATT	1 cut(s)	452
SseBI	AGGCCT	1 cut(s)	108
SsiI	CCGC	4 cut(s)	37, 188, 367, 411
SspMI	CTAG	2 cut(s)	56, 294
StuI	AGGCCT	1 cut(s)	108
StyD4I	CCNGG	1 cut(s)	354
StyI	CCWWGG	2 cut(s)	252, 429
TaaI	ACNGT	1 cut(s)	62
TaiI	ACGT	2 cut(s)	12, 213
TaqI	TCGA	1 cut(s)	129
TasI	AATT	1 cut(s)	452
TatI	WGTACW	1 cut(s)	213
TfiI	GAWTC	1 cut(s)	317
Tru1I	TTAA	2 cut(s)	351, 419
Tru9I	TTAA	2 cut(s)	351, 419
TseFI	GTSAC	2 cut(s)	12, 508
TseI	GCWGC	3 cut(s)	170, 225, 491
Tsp45I	GTSAC	2 cut(s)	12, 508
TspDTI	ATGAA	2 cut(s)	91, 545
VpaK11BI	GGWCC	1 cut(s)	500
XcmI	CCANNNNNNNNNTGG	1 cut(s)	502
XmiI	GTMKAC	1 cut(s)	482
XspI	CTAG	2 cut(s)	56, 294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.