Rorug05G0380000

Glycosyltransferase Family 4

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0007099
Physical Location & Seq
Reverse (-)
51563038 .. 51565689
2652 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0380000.1

Sequence Viewer

Length: 1368 bp
ATGGATGGTTCAGGTTTGGGAGGTGGATTTTTGTCTGGTCCAAGTGGGGGGACACTAGACCTTGAATCGGCGATCCCCAGACACCAGGAGAAGCAGTTGGGTCATCCGGGGTTAGCACATCATCAACATCATGGGATTGTGATGAGTGGTGTTGGGGTTGGGGTTGATCACCGCCCTGTAGGGCTTGTAGAGGTGAAAGGGTCGATACCAAGAGGTGCTTCGATGAATGTTGTAAAAGGGAAGGCGGTTGCACCTTTTAATAGCAGTAATGCTTACAATTTGAGTGAAGAAGATGAGCCAAGTTATACAGAAGATGGGAATGGTGAGAACGTTGAAGGAGCCACGGGTAAAAAGGGATCCACATGGCAGCGAATGAAATGGACGGATAGAGTGGTTAGGCTTCTTATATCGGTGGTTGCTTGTGTGGATGATGATGGTACGGTTGAAGGTGGTGAAGGCCTTAAGAGGAAATCTGCAGTTTTACAGAAAAAGGGTAAGTGGAAGACTGTGTCAAAGATAATGATTGGTAAAGGTTGCCATGTGTCACCTCAGCAGTGCGAGGACAAGTTTAATGATTTGAACAAGAGGTATAAAAGGTTGAATGATATTCTTGGGAGGGGAACTAGTTGTAGAGTGGTGGAGAATCCTACTCTTATGGACTCAATGCCCCATCTCTCCGCCAAGGCGAAAGATGACGTTAGAAAGATTTTGAGTTCAAAACAGTTGTTTTATAAAGAAATGTGTGCTTATCATAATGGACAGTGGATACCTGGTTGTCATGATCTTGACCTCAAGGGTCATCCTTTACCTCCCGGGAGATGCTCAACAGACAATAATGCTTCTGAGGAAGAAGGGGCTGAAGAACACCATGACACTGAGGATGATGAGTTAGATGACGAAGATAATAATGCTGATGGTATTGATAGGGATCGGATGGGTAGAATGGGTGACAGGACGAGATCTAGTGAAGAGGATGACCATTTCTGGCAACATGTTTCTCTGGATAGTTTTGAAGTTGAAATGGCTGAGGTTCTTCAAGACCCAACAAAGTCTCTATGGGAGCGAAGAGAGTGGATCAAGAAACAGAAGTTGCAACTCCAACAGCAAAGAGTCAGCTGCGAGGCTGAAGCTTTGGAGCTTGAGAAGCAGAGGTATAAATGGCTAAGATACCGTAGCAAGAAAGACAGGGAACTGGAGAGGTTGAGGCTGGAGAATGAGAGAATGAAATTAGAGAATGAGAAAAGGGTACTGCAACTGAGGCAGAAGGAACTGGAAATAGATGTGAGGAGGTCAGAAGCTTCTTTAGAACCTTCTGTTGGTATTGACAGATTGCTAGGAAGAGATCTTGACTTGGGGAGGCATCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_trans_1_4 Glyco_transf_4 Glycos_transf_1

Protein Analysis

455

Amino Acids

51.38

Weight (kDa)

5.98

Isoelectric Point (pI)

43.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 124 - 214 4.1e-13 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 732
AciI CCGC 3 cut(s) 172, 245, 678
AclI AACGTT 1 cut(s) 330
AclWI GGATC 5 cut(s) 67, 351, 364, 936, 1082
AcuI CTGAAG 2 cut(s) 879, 1146
AfaI GTAC 2 cut(s) 439, 1248
AfiI CCNNNNNNNGG 3 cut(s) 47, 67, 1316
AflII CTTAAG 1 cut(s) 461
AflIII ACRYGT 1 cut(s) 991
AgsI TTSAA 9 cut(s) 65, 335, 446, 580, 601, 717, 1013, 1019, 1037
AhlI ACTAGT 1 cut(s) 623
AjnI CCWGG 2 cut(s) 84, 769
AjuI GAANNNNNNNTTGG 4 cut(s) 202, 234, 1299, 1331
AluBI AGCT 4 cut(s) 1116, 1130, 1138, 1298
AluI AGCT 4 cut(s) 1116, 1130, 1138, 1298
Alw26I GTCTC 1 cut(s) 1056
AlwI GGATC 5 cut(s) 67, 351, 364, 936, 1082
Ama87I CYCGRG 1 cut(s) 812
AoxI GGCC 1 cut(s) 457
ApeKI GCWGC 2 cut(s) 367, 1116
AspS9I GGNCC 1 cut(s) 38
AsuC2I CCSGG 3 cut(s) 108, 813, 814
AsuHPI GGTGA 6 cut(s) 161, 205, 335, 464, 537, 959
AvaI CYCGRG 1 cut(s) 812
AvaII GGWCC 1 cut(s) 38
BamHI GGATCC 1 cut(s) 356
BbsI GAAGAC 1 cut(s) 509
BbvCI CCTCAGC 2 cut(s) 549, 1026
BbvI GCAGC 2 cut(s) 379, 1103
BccI CCATC 5 cut(s) 308, 428, 678, 908, 928
BciT130I CCWGG 2 cut(s) 86, 771
BciVI GTATCC 1 cut(s) 759
BclI TGATCA 1 cut(s) 166
BcnI CCSGG 3 cut(s) 108, 813, 814
BcoDI GTCTC 1 cut(s) 1056
BcuI ACTAGT 1 cut(s) 623
BfaI CTAG 4 cut(s) 56, 624, 963, 1334
BfmI CTRYAG 2 cut(s) 177, 474
BfrI CTTAAG 1 cut(s) 461
BfuI GTATCC 1 cut(s) 759
BglII AGATCT 2 cut(s) 959, 1342
BisI GCNGC 2 cut(s) 368, 1117
BlsI GCNGC 2 cut(s) 369, 1118
Bme1390I CCNGG 5 cut(s) 86, 108, 771, 813, 814
Bme18I GGWCC 1 cut(s) 38
BmeT110I CYCGRG 1 cut(s) 812
BmgT120I GGNCC 1 cut(s) 38
BmiI GGNNCC 2 cut(s) 340, 358
BmrFI CCNGG 5 cut(s) 86, 108, 771, 813, 814
BmsI GCATC 1 cut(s) 809
BpiI GAAGAC 1 cut(s) 509
BpmI CTGGAG 2 cut(s) 1214, 1229
Bpu10I CCTNAGC 2 cut(s) 549, 1026
BpuEI CTTGAG 2 cut(s) 776, 1160
BpuMI CCSGG 3 cut(s) 108, 813, 814
BsaBI GATNNNNATC 1 cut(s) 927
BsaJI CCNNGG 4 cut(s) 107, 342, 681, 812
BsaXI ACNNNNNCTCC 2 cut(s) 80, 110
Bsc4I CCNNNNNNNGG 3 cut(s) 47, 67, 1316
Bse1I ACTGG 2 cut(s) 1197, 1275
Bse8I GATNNNNATC 1 cut(s) 927
BseBI CCWGG 2 cut(s) 86, 771
BseDI CCNNGG 4 cut(s) 107, 342, 681, 812
BseGI GGATG 7 cut(s) 10, 103, 433, 799, 886, 939, 979
BseJI GATNNNNATC 1 cut(s) 927
BseLI CCNNNNNNNGG 3 cut(s) 47, 67, 1316
BseMII CTCAG 5 cut(s) 563, 834, 867, 1017, 1247
BseNI ACTGG 2 cut(s) 1197, 1275
BseRI GAGGAG 1 cut(s) 1300
BseXI GCAGC 2 cut(s) 379, 1103
BshFI GGCC 1 cut(s) 459
BsiHKCI CYCGRG 1 cut(s) 812
BsiSI CCGG 2 cut(s) 107, 813
BslFI GGGAC 1 cut(s) 64
BslI CCNNNNNNNGG 3 cut(s) 47, 67, 1316
BsmAI GTCTC 1 cut(s) 1056
BsmFI GGGAC 1 cut(s) 64
BsnI GGCC 1 cut(s) 459
BsoBI CYCGRG 1 cut(s) 812
Bsp143I GATC 8 cut(s) 72, 166, 356, 781, 928, 959, 1074, 1342
BspACI CCGC 3 cut(s) 172, 245, 678
BspANI GGCC 1 cut(s) 459
BspCNI CTCAG 5 cut(s) 562, 835, 868, 1018, 1248
BspHI TCATGA 1 cut(s) 778
BspLI GGNNCC 2 cut(s) 340, 358
BspMAI CTGCAG 1 cut(s) 478
BspPI GGATC 5 cut(s) 67, 351, 364, 936, 1082
BspTI CTTAAG 1 cut(s) 461
BsrI ACTGG 2 cut(s) 1197, 1275
BssECI CCNNGG 4 cut(s) 107, 342, 681, 812
BssMI GATC 8 cut(s) 72, 166, 356, 781, 928, 959, 1074, 1342
BssT1I CCWWGG 1 cut(s) 681
Bst2UI CCWGG 2 cut(s) 86, 771
Bst4CI ACNGT 5 cut(s) 442, 508, 723, 762, 1172
Bst6I CTCTTC 3 cut(s) 963, 1060, 1333
BstAFI CTTAAG 1 cut(s) 461
BstDEI CTNAG 6 cut(s) 549, 843, 876, 1026, 1163, 1256
BstDSI CCRYGG 1 cut(s) 342
BstF5I GGATG 7 cut(s) 10, 103, 433, 799, 886, 939, 979
BstKTI GATC 8 cut(s) 75, 169, 359, 784, 931, 962, 1077, 1345
BstMAI GTCTC 1 cut(s) 1056
BstMBI GATC 8 cut(s) 72, 166, 356, 781, 928, 959, 1074, 1342
BstMWI GCNNNNNNNGC 2 cut(s) 1144, 1258
BstNI CCWGG 2 cut(s) 86, 771
BstNSI RCATGY 1 cut(s) 995
BstSCI CCNGG 5 cut(s) 84, 106, 769, 811, 812
BstSFI CTRYAG 2 cut(s) 177, 474
BstV1I GCAGC 2 cut(s) 379, 1103
BstV2I GAAGAC 1 cut(s) 509
BstX2I RGATCY 3 cut(s) 356, 959, 1342
BstYI RGATCY 3 cut(s) 356, 959, 1342
BsuI GTATCC 1 cut(s) 759
BsuRI GGCC 1 cut(s) 459
BtgI CCRYGG 1 cut(s) 342
BtsCI GGATG 7 cut(s) 10, 103, 433, 799, 886, 939, 979
BtsI GCAGTG 1 cut(s) 560
BtsIMutI CAGTG 3 cut(s) 560, 767, 873
CciI TCATGA 1 cut(s) 778
Cfr13I GGNCC 1 cut(s) 38
Cfr9I CCCGGG 1 cut(s) 812
CsiI ACCWGGT 1 cut(s) 769
Csp6I GTAC 2 cut(s) 438, 1247
CviAII CATG 6 cut(s) 131, 363, 539, 779, 869, 992
CviQI GTAC 2 cut(s) 438, 1247
DdeI CTNAG 6 cut(s) 549, 843, 876, 1026, 1163, 1256
DpnI GATC 8 cut(s) 74, 168, 358, 783, 930, 961, 1076, 1344
DpnII GATC 8 cut(s) 72, 166, 356, 781, 928, 959, 1074, 1342
Eam1104I CTCTTC 3 cut(s) 963, 1060, 1333
EarI CTCTTC 3 cut(s) 963, 1060, 1333
EciI GGCGGA 1 cut(s) 667
Eco130I CCWWGG 1 cut(s) 681
Eco147I AGGCCT 1 cut(s) 459
Eco47I GGWCC 1 cut(s) 38
Eco57I CTGAAG 2 cut(s) 879, 1146
Eco88I CYCGRG 1 cut(s) 812
EcoRII CCWGG 2 cut(s) 84, 769
EcoT14I CCWWGG 1 cut(s) 681
ErhI CCWWGG 1 cut(s) 681
FaeI CATG 6 cut(s) 134, 366, 542, 782, 872, 995
FalI AAGNNNNNCTT 2 cut(s) 202, 234
FaqI GGGAC 1 cut(s) 64
FatI CATG 6 cut(s) 130, 362, 538, 778, 868, 991
FbaI TGATCA 1 cut(s) 166
Fnu4HI GCNGC 2 cut(s) 368, 1117
FokI GGATG 7 cut(s) 17, 90, 440, 786, 893, 946, 986
Fsp4HI GCNGC 2 cut(s) 368, 1117
FspBI CTAG 4 cut(s) 56, 624, 963, 1334
GluI GCNGC 2 cut(s) 368, 1117
GsuI CTGGAG 2 cut(s) 1214, 1229
HaeIII GGCC 1 cut(s) 459
HapII CCGG 2 cut(s) 107, 813
Hin1II CATG 6 cut(s) 134, 366, 542, 782, 872, 995
HindIII AAGCTT 2 cut(s) 1128, 1296
HinfI GANTC 4 cut(s) 65, 643, 659, 1110
HpaII CCGG 2 cut(s) 107, 813
HphI GGTGA 6 cut(s) 161, 205, 335, 464, 537, 959
Hpy188I TCNGA 3 cut(s) 844, 933, 1294
Hpy188III TCNNGA 6 cut(s) 779, 785, 1001, 1037, 1078, 1346
HpyAV CCTTC 7 cut(s) 235, 329, 440, 449, 845, 1258, 1320
HpyCH4III ACNGT 5 cut(s) 442, 508, 723, 762, 1172
HpyCH4IV ACGT 2 cut(s) 330, 696
HpyCH4V TGCA 4 cut(s) 251, 476, 1093, 1252
HpyF10VI GCNNNNNNNGC 2 cut(s) 1144, 1258
HpyF3I CTNAG 6 cut(s) 549, 843, 876, 1026, 1163, 1256
HpySE526I ACGT 2 cut(s) 330, 696
Hsp92II CATG 6 cut(s) 134, 366, 542, 782, 872, 995
Ksp22I TGATCA 1 cut(s) 166
Kzo9I GATC 8 cut(s) 72, 166, 356, 781, 928, 959, 1074, 1342
LmnI GCTCC 3 cut(s) 338, 1060, 1135
Lsp1109I GCAGC 2 cut(s) 379, 1103
LweI GCATC 1 cut(s) 809
MabI ACCWGGT 1 cut(s) 769
MaeI CTAG 4 cut(s) 56, 624, 963, 1334
MaeII ACGT 2 cut(s) 330, 696
MaeIII GTNAC 2 cut(s) 543, 947
MalI GATC 8 cut(s) 74, 168, 358, 783, 930, 961, 1076, 1344
MboI GATC 8 cut(s) 72, 166, 356, 781, 928, 959, 1074, 1342
MflI RGATCY 3 cut(s) 356, 959, 1342
MluCI AATT 2 cut(s) 277, 1226
MlyI GAGTC 2 cut(s) 653, 1119
MmeI TCCRAC 1 cut(s) 1123
MseI TTAA 3 cut(s) 258, 462, 570
MspA1I CMGCKG 1 cut(s) 1116
MspCI CTTAAG 1 cut(s) 461
MspI CCGG 2 cut(s) 107, 813
MspR9I CCNGG 5 cut(s) 86, 108, 771, 813, 814
MvaI CCWGG 2 cut(s) 86, 771
MwoI GCNNNNNNNGC 2 cut(s) 1144, 1258
NciI CCSGG 3 cut(s) 108, 813, 814
NdeII GATC 8 cut(s) 72, 166, 356, 781, 928, 959, 1074, 1342
NlaIII CATG 6 cut(s) 134, 366, 542, 782, 872, 995
NlaIV GGNNCC 2 cut(s) 340, 358
NmuCI GTSAC 2 cut(s) 543, 947
NspI RCATGY 1 cut(s) 995
PagI TCATGA 1 cut(s) 778
PceI AGGCCT 1 cut(s) 459
PciI ACATGT 1 cut(s) 991
PfeI GAWTC 2 cut(s) 65, 643
PflFI GACNNNGTC 1 cut(s) 508
PkrI GCNGC 2 cut(s) 369, 1118
PleI GAGTC 2 cut(s) 653, 1118
PpsI GAGTC 2 cut(s) 653, 1118
PscI ACATGT 1 cut(s) 991
PsiI TTATAA 1 cut(s) 732
Psp1406I AACGTT 1 cut(s) 330
Psp6I CCWGG 2 cut(s) 84, 769
PspGI CCWGG 2 cut(s) 84, 769
PspN4I GGNNCC 2 cut(s) 340, 358
PspPI GGNCC 1 cut(s) 38
PstI CTGCAG 1 cut(s) 478
PsuI RGATCY 3 cut(s) 356, 959, 1342
PsyI GACNNNGTC 1 cut(s) 508
PvuII CAGCTG 1 cut(s) 1116
RsaI GTAC 2 cut(s) 439, 1248
RsaNI GTAC 2 cut(s) 438, 1247
SaqAI TTAA 3 cut(s) 258, 462, 570
SatI GCNGC 2 cut(s) 368, 1117
Sau3AI GATC 8 cut(s) 72, 166, 356, 781, 928, 959, 1074, 1342
Sau96I GGNCC 1 cut(s) 38
SchI GAGTC 2 cut(s) 653, 1119
ScrFI CCNGG 5 cut(s) 86, 108, 771, 813, 814
SexAI ACCWGGT 1 cut(s) 769
SfaNI GCATC 1 cut(s) 809
SfcI CTRYAG 2 cut(s) 177, 474
SinI GGWCC 1 cut(s) 38
SmaI CCCGGG 1 cut(s) 814
SmlI CTYRAG 3 cut(s) 461, 791, 1139
SmoI CTYRAG 3 cut(s) 461, 791, 1139
SpeI ACTAGT 1 cut(s) 623
Sse9I AATT 2 cut(s) 277, 1226
SseBI AGGCCT 1 cut(s) 459
SsiI CCGC 3 cut(s) 172, 245, 678
SspMI CTAG 4 cut(s) 56, 624, 963, 1334
StuI AGGCCT 1 cut(s) 459
StyD4I CCNGG 5 cut(s) 84, 106, 769, 811, 812
StyI CCWWGG 1 cut(s) 681
TaaI ACNGT 5 cut(s) 442, 508, 723, 762, 1172
TaiI ACGT 2 cut(s) 333, 699
TaqI TCGA 2 cut(s) 203, 221
TasI AATT 2 cut(s) 277, 1226
TfiI GAWTC 2 cut(s) 65, 643
Tru1I TTAA 3 cut(s) 258, 462, 570
Tru9I TTAA 3 cut(s) 258, 462, 570
TscAI CASTG 3 cut(s) 560, 767, 880
TseFI GTSAC 2 cut(s) 543, 947
TseI GCWGC 2 cut(s) 367, 1116
Tsp45I GTSAC 2 cut(s) 543, 947
TspDTI ATGAA 3 cut(s) 239, 389, 1238
TspGWI ACGGA 1 cut(s) 398
TspMI CCCGGG 1 cut(s) 812
TspRI CASTG 3 cut(s) 560, 767, 880
Tth111I GACNNNGTC 1 cut(s) 508
Vha464I CTTAAG 1 cut(s) 461
VpaK11BI GGWCC 1 cut(s) 38
XceI RCATGY 1 cut(s) 995
XmaI CCCGGG 1 cut(s) 812
XspI CTAG 4 cut(s) 56, 624, 963, 1334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.