Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0007099

Physical Location & Seq

Genomic Coordinates Forward (+)

5831134 .. 5831754

Gene Structure 621 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g07570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGTTTTTTTCCGTTTTCTTTTCCACCACCTACACCGCCACCAAAACCAAGACACCGGAAATGTCCGCTGCGTCACGGTGCCTTCCAATATCCACCACTCGAATCCACATAATGGCCTTGGACGGAATCGTCAACGTCAACTCACTCTTCTCTTTCGCGCTCTTCGTCGGCCTCACATTTTACCCCACCACCGATCCTGCCGCCATGCTCATTGGCTCCGACGTGGCCTGCGCCGCTGGGGTCTCCTCCGCAGAGGGCCTCATCGCCTTCCACGTGTACTCCTTCAGCTCCTTCCTCTTCTCCAGCCTCATTGCCTTGGCCCTCAAGCAAGCCATCAAGATCAGCAGAGACATTGTGGTTCAAAATGGCGGTGACTCCGGTTCGCACGTGGGTCATGTGAACCGGGTAGCTTTGCGGGTCGGGACGCTGGTTTCGGCTTTCGGGTCTGTTTTGGGATGTGGGTTTTTGATGATGGCGCTGGTGGACTTGGTTCAGATCAAATTGGGGAGATTGGGTTGTGGGAGTCTTTACACTTTGGCTGCAATTGGTCCTCTGGTGACTTTGGTTCCTCTAGCTCTTTTTATCTATGTTTTTCTTGTGCTACATGCTTTTACGAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

207

Amino Acids

21.81

Weight (kDa)

9.02

Isoelectric Point (pI)

25.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007099)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05950
fragaria_vesca	FvH4_3g37210 FvH4_7g23601
malus_domestica	MD01G1141800.v1.1 MD11G1091000.v1.1
prunus_persica	Prupe.2G242900_v2.0.a1 Prupe.6G067200_v2.0.a1
pyrus_communis	pycom01g16210 pycom11g07570
rosa_chinensis	RchiOBHm_Chr1g0368851 RchiOBHm_Chr5g0066951
rosa_laevigata	RLG00000027182 RLG00000027184 RLG00000027186 RLG00000035896
rosa_multiflora	Rmu_sc0008378.1_g000006 Rmu_sc0012799.1_g000008 Rmu_sc0030248.1_g000001
rosa_roxburghii	Rroxscaffold_1G00014170
rosa_rugosa	Rorug01G0345300 Rorug05G0380000
rosa_samantha	Rh1AG352400 Rh5BG456700 Rh5CG478800
rosa_wichuraiana	Rw5G041120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	128
AccB1I	GGYRCC	1 cut(s)	78
AccB7I	CCANNNNNTGG	1 cut(s)	112
AccII	CGCG	1 cut(s)	158
AciI	CCGC	7 cut(s)	36, 66, 201, 234, 249, 369, 415
AclWI	GGATC	1 cut(s)	188
AcuI	CTGAAG	1 cut(s)	268
AcvI	CACGTG	2 cut(s)	274, 388
AfaI	GTAC	1 cut(s)	278
AfiI	CCNNNNNNNGG	1 cut(s)	112
AflIII	ACRYGT	1 cut(s)	273
AgsI	TTSAA	1 cut(s)	362
AjiI	CACGTC	1 cut(s)	223
AluBI	AGCT	3 cut(s)	288, 410, 575
AluI	AGCT	3 cut(s)	288, 410, 575
Alw26I	GTCTC	2 cut(s)	247, 342
AlwI	GGATC	1 cut(s)	188
AoxI	GGCC	5 cut(s)	114, 169, 225, 256, 318
ApeKI	GCWGC	2 cut(s)	68, 539
ArsI	GACNNNNNNTTYG	2 cut(s)	415, 447
AspLEI	GCGC	3 cut(s)	160, 233, 478
AspS9I	GGNCC	3 cut(s)	256, 319, 548
AsuC2I	CCSGG	1 cut(s)	404
AsuHPI	GGTGA	2 cut(s)	383, 568
AvaII	GGWCC	1 cut(s)	548
BanI	GGYRCC	1 cut(s)	78
BbrPI	CACGTG	2 cut(s)	274, 388
BbvI	GCAGC	2 cut(s)	55, 526
BccI	CCATC	2 cut(s)	341, 466
BcnI	CCSGG	1 cut(s)	404
BcoDI	GTCTC	2 cut(s)	247, 342
BfaI	CTAG	1 cut(s)	572
BfoI	RGCGCY	1 cut(s)	479
BisI	GCNGC	4 cut(s)	69, 201, 234, 540
BlsI	GCNGC	4 cut(s)	70, 202, 235, 541
Bme1390I	CCNGG	1 cut(s)	404
Bme18I	GGWCC	1 cut(s)	548
BmgBI	CACGTC	1 cut(s)	223
BmgT120I	GGNCC	3 cut(s)	256, 319, 548
BmiI	GGNNCC	3 cut(s)	80, 217, 567
BmrFI	CCNGG	1 cut(s)	404
BpmI	CTGGAG	1 cut(s)	286
BpuEI	CTTGAG	1 cut(s)	308
BpuMI	CCSGG	1 cut(s)	404
BsaAI	YACGTR	2 cut(s)	274, 388
BsaI	GGTCTC	1 cut(s)	247
BsaJI	CCNNGG	2 cut(s)	117, 315
BsaWI	WCCGGW	2 cut(s)	55, 377
BsaXI	ACNNNNNCTCC	4 cut(s)	263, 293, 499, 529
Bsc4I	CCNNNNNNNGG	1 cut(s)	112
Bse3DI	GCAATG	1 cut(s)	309
BseDI	CCNNGG	2 cut(s)	117, 315
BseGI	GGATG	1 cut(s)	461
BseLI	CCNNNNNNNGG	1 cut(s)	112
BseMI	GCAATG	1 cut(s)	309
BseRI	GAGGAG	1 cut(s)	235
BseXI	GCAGC	2 cut(s)	55, 526
BseYI	CCCAGC	1 cut(s)	236
Bsh1236I	CGCG	1 cut(s)	158
BshFI	GGCC	5 cut(s)	116, 171, 227, 258, 320
BshNI	GGYRCC	1 cut(s)	78
BsiSI	CCGG	3 cut(s)	56, 378, 403
BslFI	GGGAC	1 cut(s)	436
BslI	CCNNNNNNNGG	1 cut(s)	112
BsmAI	GTCTC	2 cut(s)	247, 342
BsmFI	GGGAC	1 cut(s)	436
BsnI	GGCC	5 cut(s)	116, 171, 227, 258, 320
Bso31I	GGTCTC	1 cut(s)	247
Bsp143I	GATC	3 cut(s)	193, 339, 495
BspACI	CCGC	7 cut(s)	36, 66, 201, 234, 249, 369, 415
BspANI	GGCC	5 cut(s)	116, 171, 227, 258, 320
BspFNI	CGCG	1 cut(s)	158
BspLI	GGNNCC	3 cut(s)	80, 217, 567
BspPI	GGATC	1 cut(s)	188
BspQI	GCTCTTC	1 cut(s)	167
BspT107I	GGYRCC	1 cut(s)	78
BspTNI	GGTCTC	1 cut(s)	247
BsrDI	GCAATG	1 cut(s)	309
BssECI	CCNNGG	2 cut(s)	117, 315
BssMI	GATC	3 cut(s)	193, 339, 495
BssT1I	CCWWGG	2 cut(s)	117, 315
Bst4CI	ACNGT	1 cut(s)	78
Bst6I	CTCTTC	3 cut(s)	152, 167, 302
BstBAI	YACGTR	2 cut(s)	274, 388
BstC8I	GCNNGC	2 cut(s)	229, 330
BstF5I	GGATG	1 cut(s)	461
BstFNI	CGCG	1 cut(s)	158
BstH2I	RGCGCY	1 cut(s)	479
BstHHI	GCGC	3 cut(s)	160, 233, 478
BstKTI	GATC	3 cut(s)	196, 342, 498
BstMAI	GTCTC	2 cut(s)	247, 342
BstMBI	GATC	3 cut(s)	193, 339, 495
BstMWI	GCNNNNNNNGC	1 cut(s)	233
BstNSI	RCATGY	1 cut(s)	608
BstSCI	CCNGG	1 cut(s)	402
BstUI	CGCG	1 cut(s)	158
BstV1I	GCAGC	2 cut(s)	55, 526
BsuRI	GGCC	5 cut(s)	116, 171, 227, 258, 320
BtgZI	GCGATG	1 cut(s)	247
BtrI	CACGTC	1 cut(s)	223
BtsCI	GGATG	1 cut(s)	461
Cac8I	GCNNGC	2 cut(s)	229, 330
CfoI	GCGC	3 cut(s)	160, 233, 478
Cfr13I	GGNCC	3 cut(s)	256, 319, 548
CseI	GACGC	2 cut(s)	60, 433
Csp6I	GTAC	1 cut(s)	277
CviAII	CATG	3 cut(s)	205, 395, 605
CviQI	GTAC	1 cut(s)	277
DpnI	GATC	3 cut(s)	195, 341, 497
DpnII	GATC	3 cut(s)	193, 339, 495
DrdI	GACNNNNNNGTC	1 cut(s)	128
DseDI	GACNNNNNNGTC	1 cut(s)	128
Eam1104I	CTCTTC	3 cut(s)	152, 167, 302
EarI	CTCTTC	3 cut(s)	152, 167, 302
Eco130I	CCWWGG	2 cut(s)	117, 315
Eco31I	GGTCTC	1 cut(s)	247
Eco47I	GGWCC	1 cut(s)	548
Eco57I	CTGAAG	1 cut(s)	268
Eco72I	CACGTG	2 cut(s)	274, 388
EcoO109I	RGGNCCY	1 cut(s)	256
EcoT14I	CCWWGG	2 cut(s)	117, 315
ErhI	CCWWGG	2 cut(s)	117, 315
FaeI	CATG	3 cut(s)	208, 398, 608
FaiI	YATR	5 cut(s)	110, 206, 396, 588, 606
FaqI	GGGAC	1 cut(s)	436
FatI	CATG	3 cut(s)	204, 394, 604
FauI	CCCGC	1 cut(s)	408
Fnu4HI	GCNGC	4 cut(s)	69, 201, 234, 540
FokI	GGATG	1 cut(s)	468
Fsp4HI	GCNGC	4 cut(s)	69, 201, 234, 540
FspBI	CTAG	1 cut(s)	572
GlaI	GCGC	3 cut(s)	159, 232, 477
GluI	GCNGC	4 cut(s)	69, 201, 234, 540
GsaI	CCCAGC	1 cut(s)	240
GsuI	CTGGAG	1 cut(s)	286
HaeII	RGCGCY	1 cut(s)	479
HaeIII	GGCC	5 cut(s)	116, 171, 227, 258, 320
HapII	CCGG	3 cut(s)	56, 378, 403
HgaI	GACGC	2 cut(s)	60, 433
HhaI	GCGC	3 cut(s)	160, 233, 478
Hin1II	CATG	3 cut(s)	208, 398, 608
Hin6I	GCGC	3 cut(s)	158, 231, 476
HinP1I	GCGC	3 cut(s)	158, 231, 476
HincII	GTYRAC	2 cut(s)	133, 139
HindII	GTYRAC	2 cut(s)	133, 139
HinfI	GANTC	4 cut(s)	102, 126, 374, 523
HpaII	CCGG	3 cut(s)	56, 378, 403
HphI	GGTGA	2 cut(s)	383, 568
Hpy166II	GTNNAC	5 cut(s)	133, 139, 277, 400, 484
Hpy188I	TCNGA	2 cut(s)	220, 495
Hpy188III	TCNNGA	2 cut(s)	337, 421
Hpy8I	GTNNAC	5 cut(s)	133, 139, 277, 400, 484
Hpy99I	CGWCG	2 cut(s)	170, 224
HpyAV	CCTTC	4 cut(s)	92, 277, 292, 301
HpyCH4III	ACNGT	1 cut(s)	78
HpyCH4IV	ACGT	4 cut(s)	135, 222, 273, 387
HpyCH4V	TGCA	1 cut(s)	542
HpyF10VI	GCNNNNNNNGC	1 cut(s)	233
HpySE526I	ACGT	4 cut(s)	135, 222, 273, 387
Hsp92II	CATG	3 cut(s)	208, 398, 608
HspAI	GCGC	3 cut(s)	158, 231, 476
Kzo9I	GATC	3 cut(s)	193, 339, 495
LguI	GCTCTTC	1 cut(s)	167
LmnI	GCTCC	2 cut(s)	221, 293
Lsp1109I	GCAGC	2 cut(s)	55, 526
MaeI	CTAG	1 cut(s)	572
MaeII	ACGT	4 cut(s)	135, 222, 273, 387
MaeIII	GTNAC	3 cut(s)	72, 371, 556
MalI	GATC	3 cut(s)	195, 341, 497
MboI	GATC	3 cut(s)	193, 339, 495
MboII	GAAGA	3 cut(s)	139, 154, 289
MfeI	CAATTG	1 cut(s)	543
MluCI	AATT	2 cut(s)	500, 543
MlyI	GAGTC	2 cut(s)	368, 532
MmeI	TCCRAC	1 cut(s)	243
MnlI	CCTC	9 cut(s)	182, 247, 256, 269, 305, 317, 332, 561, 579
MspA1I	CMGCKG	2 cut(s)	68, 236
MspI	CCGG	3 cut(s)	56, 378, 403
MspR9I	CCNGG	1 cut(s)	404
MunI	CAATTG	1 cut(s)	543
MvnI	CGCG	1 cut(s)	158
MwoI	GCNNNNNNNGC	1 cut(s)	233
NciI	CCSGG	1 cut(s)	404
NdeII	GATC	3 cut(s)	193, 339, 495
NlaIII	CATG	3 cut(s)	208, 398, 608
NlaIV	GGNNCC	3 cut(s)	80, 217, 567
NmuCI	GTSAC	3 cut(s)	72, 371, 556
NspI	RCATGY	1 cut(s)	608
PciSI	GCTCTTC	1 cut(s)	167
PcsI	WCGNNNNNNNCGW	2 cut(s)	162, 270
PfeI	GAWTC	2 cut(s)	102, 126
PflMI	CCANNNNNTGG	1 cut(s)	112
PkrI	GCNGC	4 cut(s)	70, 202, 235, 541
PleI	GAGTC	2 cut(s)	368, 531
PmaCI	CACGTG	2 cut(s)	274, 388
PmlI	CACGTG	2 cut(s)	274, 388
PpsI	GAGTC	2 cut(s)	368, 531
Ppu21I	YACGTR	2 cut(s)	274, 388
PspCI	CACGTG	2 cut(s)	274, 388
PspFI	CCCAGC	1 cut(s)	236
PspN4I	GGNNCC	3 cut(s)	80, 217, 567
PspPI	GGNCC	3 cut(s)	256, 319, 548
RsaI	GTAC	1 cut(s)	278
RsaNI	GTAC	1 cut(s)	277
SapI	GCTCTTC	1 cut(s)	167
SatI	GCNGC	4 cut(s)	69, 201, 234, 540
Sau3AI	GATC	3 cut(s)	193, 339, 495
Sau96I	GGNCC	3 cut(s)	256, 319, 548
SchI	GAGTC	2 cut(s)	368, 532
ScrFI	CCNGG	1 cut(s)	404
SetI	ASST	8 cut(s)	32, 138, 225, 276, 290, 390, 412, 577
SinI	GGWCC	1 cut(s)	548
SmlI	CTYRAG	1 cut(s)	323
SmoI	CTYRAG	1 cut(s)	323
Sse9I	AATT	2 cut(s)	500, 543
SsiI	CCGC	7 cut(s)	36, 66, 201, 234, 249, 369, 415
SspMI	CTAG	1 cut(s)	572
StyD4I	CCNGG	1 cut(s)	402
StyI	CCWWGG	2 cut(s)	117, 315
TaaI	ACNGT	1 cut(s)	78
TaiI	ACGT	4 cut(s)	138, 225, 276, 390
TaqI	TCGA	1 cut(s)	100
TasI	AATT	2 cut(s)	500, 543
TatI	WGTACW	1 cut(s)	276
TauI	GCSGC	2 cut(s)	203, 236
TfiI	GAWTC	2 cut(s)	102, 126
TseFI	GTSAC	3 cut(s)	72, 371, 556
TseI	GCWGC	2 cut(s)	68, 539
Tsp45I	GTSAC	3 cut(s)	72, 371, 556
TspGWI	ACGGA	1 cut(s)	138
Van91I	CCANNNNNTGG	1 cut(s)	112
VpaK11BI	GGWCC	1 cut(s)	548
XceI	RCATGY	1 cut(s)	608
XspI	CTAG	1 cut(s)	572

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.