Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0007099

Physical Location & Seq

Genomic Coordinates Reverse (-)

73028726 .. 73029385

Gene Structure 660 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG456700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGTTCTATTTCCTAAAACCAAACAAAAATGTTCTCTCTTTTTTCATGTCCATCACCACCAGAAACACCACCAAACCAAAGTCGGAAATGTCTGACGTGTCACGCCGGACAATACCCACAACCCGCATTCACATAATGGCCCTAGACGGTATAGTCAATGTGAACTCACTTTTCTCATTTGCTCTCTTCATAGGCCTCACTTGGTACCCTGCCATCGACATCAACTCCATGCTCCTCGGCTCCAACACGGCCTGCGCTGCCGGTACCGATACAGCGGAGGGACTCATCTCATTCCACGTGTACTCTTTCAGCTGCTTTCTCTTCTCCAGCCTCATTGCCTTGGCTCTCAAGCAAGCCATCAAGATAAGCCAAAGTGGTTCTAGTAGTGGAAATGGTGGCTCGGATTCCGAGTTGCTTGGTGCCAACATGGGCCATGTTAACCAGGTGGGTTTGCGGGTCGGTACGCTGGTCTCGGCATTCGGGTCAGTTTTCGGATGCGGGTTCTTAATGATGGCCTTGGTGAACTTGGTTCAGATCAAATTGGGGAGGTTGAGTTGTGGGGATTTGTATACTTTCGCTGCCATTGGTCCTTTGGTGACTTTGGTTCCTTTGGCTCTTGTGATCTATGTTTTTCTTGTGCTTCATGCCTTTACTCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_trans_1_4 Glyco_transf_4 Glycos_transf_1

Protein Analysis

219

Amino Acids

23.51

Weight (kDa)

9.18

Isoelectric Point (pI)

31.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007099)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05950
fragaria_vesca	FvH4_3g37210 FvH4_7g23601
malus_domestica	MD01G1141800.v1.1 MD11G1091000.v1.1
prunus_persica	Prupe.2G242900_v2.0.a1 Prupe.6G067200_v2.0.a1
pyrus_communis	pycom01g16210 pycom11g07570
rosa_chinensis	RchiOBHm_Chr1g0368851 RchiOBHm_Chr5g0066951
rosa_laevigata	RLG00000027182 RLG00000027184 RLG00000027186 RLG00000035896
rosa_multiflora	Rmu_sc0008378.1_g000006 Rmu_sc0012799.1_g000008 Rmu_sc0030248.1_g000001
rosa_roxburghii	Rroxscaffold_1G00014170
rosa_rugosa	Rorug01G0345300 Rorug05G0380000
rosa_samantha	Rh1AG352400 Rh5BG456700 Rh5CG478800
rosa_wichuraiana	Rw5G041120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	152
Acc65I	GGTACC	2 cut(s)	204, 263
AccB1I	GGYRCC	3 cut(s)	204, 263, 419
AccI	GTMKAC	1 cut(s)	569
AciI	CCGC	4 cut(s)	124, 275, 454, 498
AcvI	CACGTG	1 cut(s)	298
AfaI	GTAC	4 cut(s)	206, 265, 302, 463
AflIII	ACRYGT	2 cut(s)	96, 297
AjiI	CACGTC	1 cut(s)	97
AjnI	CCWGG	1 cut(s)	441
AluBI	AGCT	1 cut(s)	312
AluI	AGCT	1 cut(s)	312
Alw26I	GTCTC	1 cut(s)	475
AoxI	GGCC	5 cut(s)	138, 193, 249, 430, 513
ApeKI	GCWGC	3 cut(s)	257, 312, 578
Asp718I	GGTACC	2 cut(s)	204, 263
AspLEI	GCGC	1 cut(s)	257
AspS9I	GGNCC	3 cut(s)	139, 430, 587
AsuHPI	GGTGA	3 cut(s)	46, 532, 607
AvaII	GGWCC	1 cut(s)	587
BaeI	ACNNNNGTAYC	2 cut(s)	453, 486
BanI	GGYRCC	3 cut(s)	204, 263, 419
BbrPI	CACGTG	1 cut(s)	298
BbvI	GCAGC	3 cut(s)	244, 299, 565
BccI	CCATC	4 cut(s)	59, 221, 365, 505
BceAI	ACGGC	1 cut(s)	264
BciT130I	CCWGG	1 cut(s)	443
BcoDI	GTCTC	1 cut(s)	475
BfaI	CTAG	2 cut(s)	143, 381
BisI	GCNGC	3 cut(s)	258, 313, 579
BlsI	GCNGC	3 cut(s)	259, 314, 580
Bme1390I	CCNGG	1 cut(s)	443
Bme18I	GGWCC	1 cut(s)	587
BmgBI	CACGTC	1 cut(s)	97
BmgT120I	GGNCC	3 cut(s)	139, 430, 587
BmiI	GGNNCC	5 cut(s)	206, 241, 265, 421, 606
BmrFI	CCNGG	1 cut(s)	443
BmsI	GCATC	1 cut(s)	485
BpmI	CTGGAG	1 cut(s)	310
BpuEI	CTTGAG	1 cut(s)	332
BsaAI	YACGTR	1 cut(s)	298
BsaI	GGTCTC	1 cut(s)	475
BsaJI	CCNNGG	3 cut(s)	235, 339, 516
BsaXI	ACNNNNNCTCC	4 cut(s)	209, 239, 538, 568
Bse118I	RCCGGY	1 cut(s)	260
Bse3DI	GCAATG	1 cut(s)	333
BseBI	CCWGG	1 cut(s)	443
BseDI	CCNNGG	3 cut(s)	235, 339, 516
BseGI	GGATG	1 cut(s)	500
BseMI	GCAATG	1 cut(s)	333
BseRI	GAGGAG	1 cut(s)	224
BseXI	GCAGC	3 cut(s)	244, 299, 565
BshFI	GGCC	5 cut(s)	140, 195, 251, 432, 515
BshNI	GGYRCC	3 cut(s)	204, 263, 419
BsiSI	CCGG	2 cut(s)	106, 261
BslFI	GGGAC	1 cut(s)	294
BsmAI	GTCTC	1 cut(s)	475
BsmFI	GGGAC	1 cut(s)	294
BsmI	GAATGC	2 cut(s)	126, 476
BsnI	GGCC	5 cut(s)	140, 195, 251, 432, 515
Bso31I	GGTCTC	1 cut(s)	475
Bsp143I	GATC	2 cut(s)	534, 621
BspACI	CCGC	4 cut(s)	124, 275, 454, 498
BspANI	GGCC	5 cut(s)	140, 195, 251, 432, 515
BspLI	GGNNCC	5 cut(s)	206, 241, 265, 421, 606
BspT107I	GGYRCC	3 cut(s)	204, 263, 419
BspTNI	GGTCTC	1 cut(s)	475
BsrDI	GCAATG	1 cut(s)	333
BsrFI	RCCGGY	1 cut(s)	260
BssAI	RCCGGY	1 cut(s)	260
BssECI	CCNNGG	3 cut(s)	235, 339, 516
BssMI	GATC	2 cut(s)	534, 621
BssNAI	GTATAC	1 cut(s)	570
BssT1I	CCWWGG	2 cut(s)	339, 516
Bst1107I	GTATAC	1 cut(s)	570
Bst2UI	CCWGG	1 cut(s)	443
Bst4CI	ACNGT	1 cut(s)	149
Bst6I	CTCTTC	2 cut(s)	191, 326
BstBAI	YACGTR	1 cut(s)	298
BstC8I	GCNNGC	2 cut(s)	253, 354
BstF5I	GGATG	1 cut(s)	500
BstHHI	GCGC	1 cut(s)	257
BstKTI	GATC	2 cut(s)	537, 624
BstMAI	GTCTC	1 cut(s)	475
BstMBI	GATC	2 cut(s)	534, 621
BstMWI	GCNNNNNNNGC	1 cut(s)	257
BstNI	CCWGG	1 cut(s)	443
BstSCI	CCNGG	1 cut(s)	441
BstV1I	GCAGC	3 cut(s)	244, 299, 565
BstZ17I	GTATAC	1 cut(s)	570
BsuRI	GGCC	5 cut(s)	140, 195, 251, 432, 515
BtrI	CACGTC	1 cut(s)	97
BtsCI	GGATG	1 cut(s)	500
Cac8I	GCNNGC	2 cut(s)	253, 354
CfoI	GCGC	1 cut(s)	257
Cfr10I	RCCGGY	1 cut(s)	260
Cfr13I	GGNCC	3 cut(s)	139, 430, 587
CsiI	ACCWGGT	1 cut(s)	441
Csp6I	GTAC	4 cut(s)	205, 264, 301, 462
CviAII	CATG	5 cut(s)	46, 229, 427, 434, 644
CviQI	GTAC	4 cut(s)	205, 264, 301, 462
DpnI	GATC	2 cut(s)	536, 623
DpnII	GATC	2 cut(s)	534, 621
DrdI	GACNNNNNNGTC	1 cut(s)	152
DseDI	GACNNNNNNGTC	1 cut(s)	152
Eam1104I	CTCTTC	2 cut(s)	191, 326
EarI	CTCTTC	2 cut(s)	191, 326
Eco130I	CCWWGG	2 cut(s)	339, 516
Eco147I	AGGCCT	1 cut(s)	195
Eco31I	GGTCTC	1 cut(s)	475
Eco47I	GGWCC	1 cut(s)	587
Eco72I	CACGTG	1 cut(s)	298
EcoRII	CCWGG	1 cut(s)	441
EcoT14I	CCWWGG	2 cut(s)	339, 516
ErhI	CCWWGG	2 cut(s)	339, 516
FaeI	CATG	5 cut(s)	49, 232, 430, 437, 647
FaqI	GGGAC	1 cut(s)	294
FatI	CATG	5 cut(s)	45, 228, 426, 433, 643
FauI	CCCGC	3 cut(s)	131, 447, 491
FblI	GTMKAC	1 cut(s)	569
Fnu4HI	GCNGC	3 cut(s)	258, 313, 579
FokI	GGATG	1 cut(s)	507
Fsp4HI	GCNGC	3 cut(s)	258, 313, 579
FspBI	CTAG	2 cut(s)	143, 381
GlaI	GCGC	1 cut(s)	256
GluI	GCNGC	3 cut(s)	258, 313, 579
GsuI	CTGGAG	1 cut(s)	310
HaeIII	GGCC	5 cut(s)	140, 195, 251, 432, 515
HapII	CCGG	2 cut(s)	106, 261
HhaI	GCGC	1 cut(s)	257
Hin1II	CATG	5 cut(s)	49, 232, 430, 437, 647
Hin6I	GCGC	1 cut(s)	255
HinP1I	GCGC	1 cut(s)	255
HincII	GTYRAC	1 cut(s)	439
HindII	GTYRAC	1 cut(s)	439
HinfI	GANTC	2 cut(s)	282, 404
HpaI	GTTAAC	1 cut(s)	439
HpaII	CCGG	2 cut(s)	106, 261
HphI	GGTGA	3 cut(s)	46, 532, 607
Hpy166II	GTNNAC	5 cut(s)	163, 301, 439, 523, 570
Hpy188I	TCNGA	6 cut(s)	85, 94, 403, 409, 494, 534
Hpy188III	TCNNGA	1 cut(s)	361
Hpy8I	GTNNAC	5 cut(s)	163, 301, 439, 523, 570
HpyCH4III	ACNGT	1 cut(s)	149
HpyCH4IV	ACGT	2 cut(s)	96, 297
HpyF10VI	GCNNNNNNNGC	1 cut(s)	257
HpySE526I	ACGT	2 cut(s)	96, 297
Hsp92II	CATG	5 cut(s)	49, 232, 430, 437, 647
HspAI	GCGC	1 cut(s)	255
KpnI	GGTACC	2 cut(s)	208, 267
KspAI	GTTAAC	1 cut(s)	439
Kzo9I	GATC	2 cut(s)	534, 621
LmnI	GCTCC	2 cut(s)	237, 245
LpnPI	CCDG	9 cut(s)	73, 119, 222, 265, 274, 340, 428, 452, 455
Lsp1109I	GCAGC	3 cut(s)	244, 299, 565
LweI	GCATC	1 cut(s)	485
MabI	ACCWGGT	1 cut(s)	441
MaeI	CTAG	2 cut(s)	143, 381
MaeII	ACGT	2 cut(s)	96, 297
MaeIII	GTNAC	2 cut(s)	99, 595
MalI	GATC	2 cut(s)	536, 623
MboI	GATC	2 cut(s)	534, 621
MboII	GAAGA	2 cut(s)	178, 313
MluCI	AATT	1 cut(s)	539
MlyI	GAGTC	1 cut(s)	276
MmeI	TCCRAC	2 cut(s)	63, 267
MnlI	CCTC	5 cut(s)	206, 245, 271, 341, 540
MseI	TTAA	2 cut(s)	438, 506
MspA1I	CMGCKG	2 cut(s)	275, 312
MspI	CCGG	2 cut(s)	106, 261
MspR9I	CCNGG	1 cut(s)	443
Mva1269I	GAATGC	2 cut(s)	126, 476
MvaI	CCWGG	1 cut(s)	443
MwoI	GCNNNNNNNGC	1 cut(s)	257
NdeII	GATC	2 cut(s)	534, 621
NlaIII	CATG	5 cut(s)	49, 232, 430, 437, 647
NlaIV	GGNNCC	5 cut(s)	206, 241, 265, 421, 606
NmeAIII	GCCGAG	2 cut(s)	216, 452
NmuCI	GTSAC	2 cut(s)	99, 595
PceI	AGGCCT	1 cut(s)	195
PctI	GAATGC	2 cut(s)	126, 476
PfeI	GAWTC	1 cut(s)	404
PkrI	GCNGC	3 cut(s)	259, 314, 580
PleI	GAGTC	1 cut(s)	276
PmaCI	CACGTG	1 cut(s)	298
PmlI	CACGTG	1 cut(s)	298
PpsI	GAGTC	1 cut(s)	276
Ppu21I	YACGTR	1 cut(s)	298
Psp6I	CCWGG	1 cut(s)	441
PspCI	CACGTG	1 cut(s)	298
PspGI	CCWGG	1 cut(s)	441
PspN4I	GGNNCC	5 cut(s)	206, 241, 265, 421, 606
PspPI	GGNCC	3 cut(s)	139, 430, 587
PvuII	CAGCTG	1 cut(s)	312
RsaI	GTAC	4 cut(s)	206, 265, 302, 463
RsaNI	GTAC	4 cut(s)	205, 264, 301, 462
SaqAI	TTAA	2 cut(s)	438, 506
SatI	GCNGC	3 cut(s)	258, 313, 579
Sau3AI	GATC	2 cut(s)	534, 621
Sau96I	GGNCC	3 cut(s)	139, 430, 587
SchI	GAGTC	1 cut(s)	276
ScrFI	CCNGG	1 cut(s)	443
SetI	ASST	5 cut(s)	99, 300, 314, 447, 551
SexAI	ACCWGGT	1 cut(s)	441
SfaNI	GCATC	1 cut(s)	485
SinI	GGWCC	1 cut(s)	587
SmlI	CTYRAG	1 cut(s)	347
SmoI	CTYRAG	1 cut(s)	347
Sse9I	AATT	1 cut(s)	539
SseBI	AGGCCT	1 cut(s)	195
SsiI	CCGC	4 cut(s)	124, 275, 454, 498
SspMI	CTAG	2 cut(s)	143, 381
StuI	AGGCCT	1 cut(s)	195
StyD4I	CCNGG	1 cut(s)	441
StyI	CCWWGG	2 cut(s)	339, 516
TaaI	ACNGT	1 cut(s)	149
TaiI	ACGT	2 cut(s)	99, 300
TaqI	TCGA	1 cut(s)	216
TasI	AATT	1 cut(s)	539
TatI	WGTACW	1 cut(s)	300
TfiI	GAWTC	1 cut(s)	404
Tru1I	TTAA	2 cut(s)	438, 506
Tru9I	TTAA	2 cut(s)	438, 506
TseFI	GTSAC	2 cut(s)	99, 595
TseI	GCWGC	3 cut(s)	257, 312, 578
Tsp45I	GTSAC	2 cut(s)	99, 595
TspDTI	ATGAA	3 cut(s)	34, 178, 632
VpaK11BI	GGWCC	1 cut(s)	587
XcmI	CCANNNNNNNNNTGG	1 cut(s)	589
XmiI	GTMKAC	1 cut(s)	569
XspI	CTAG	2 cut(s)	143, 381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.