Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0030248.1

Orthogroup ID

OG0007099

Physical Location & Seq

Genomic Coordinates Forward (+)

29 .. 559

Gene Structure 531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0030248.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

atgccctcggtcggaaccgccatccacatgacggcccttgacggcatcgtgacggtgaactccctcttcaccctcgccgtcttcatcggcctttcatcggaccccagagacccctccaacaccctcatcgagcaagaagactccgcctactgcacccccggcccctccgtcgtcgaggacctcgtggccttccacgtgtactccttctcctccttcctcttctccagcctcgtcgccctcgccctcaagcaggggatccgcctcacccggaccccctcctaccaccccgccgagattctcgcccgcgtcaacagcaccctcctccgcgccgggatgctcgtctccgctgtcggctccgtctccggctgcgtcttcctcatgctcgccttggtcaacgtcgtccagatcaagctcggcactcccgcctgcgggagctaccacactctcgccgccgtcgttcctctcgtcatcttcgtccccgtgggcctcgtcatctacgtcgtcactgttctctatgctttcactcgatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

176

Amino Acids

18.65

Weight (kDa)

6.38

Isoelectric Point (pI)

37.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007099)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05950
fragaria_vesca	FvH4_3g37210 FvH4_7g23601
malus_domestica	MD01G1141800.v1.1 MD11G1091000.v1.1
prunus_persica	Prupe.2G242900_v2.0.a1 Prupe.6G067200_v2.0.a1
pyrus_communis	pycom01g16210 pycom11g07570
rosa_chinensis	RchiOBHm_Chr1g0368851 RchiOBHm_Chr5g0066951
rosa_laevigata	RLG00000027182 RLG00000027184 RLG00000027186 RLG00000035896
rosa_multiflora	Rmu_sc0008378.1_g000006 Rmu_sc0012799.1_g000008 Rmu_sc0030248.1_g000001
rosa_roxburghii	Rroxscaffold_1G00014170
rosa_rugosa	Rorug01G0345300 Rorug05G0380000
rosa_samantha	Rh1AG352400 Rh5BG456700 Rh5CG478800
rosa_wichuraiana	Rw5G041120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	306, 327
AclWI	GGATC	2 cut(s)	250, 263
AcvI	CACGTG	1 cut(s)	196
AfaI	GTAC	1 cut(s)	200
AfiI	CCNNNNNNNGG	6 cut(s)	11, 31, 97, 250, 428, 429
AflIII	ACRYGT	1 cut(s)	195
AluBI	AGCT	2 cut(s)	412, 435
AluI	AGCT	2 cut(s)	412, 435
Alw26I	GTCTC	3 cut(s)	102, 346, 364
AlwI	GGATC	2 cut(s)	250, 263
AoxI	GGCC	5 cut(s)	33, 88, 160, 186, 484
ApeKI	GCWGC	1 cut(s)	366
AspLEI	GCGC	1 cut(s)	329
AspS9I	GGNCC	6 cut(s)	34, 100, 161, 178, 270, 484
AsuC2I	CCSGG	3 cut(s)	159, 268, 331
AsuHPI	GGTGA	3 cut(s)	61, 67, 256
AvaII	GGWCC	3 cut(s)	100, 178, 270
BamHI	GGATCC	1 cut(s)	255
BauI	CACGAG	1 cut(s)	182
BbrPI	CACGTG	1 cut(s)	196
BbsI	GAAGAC	3 cut(s)	73, 144, 364
BbvI	GCAGC	1 cut(s)	353
BccI	CCATC	1 cut(s)	29
BceAI	ACGGC	4 cut(s)	48, 58, 62, 437
BcnI	CCSGG	3 cut(s)	159, 268, 331
BcoDI	GTCTC	3 cut(s)	102, 346, 364
BisI	GCNGC	2 cut(s)	367, 450
BlsI	GCNGC	2 cut(s)	368, 451
Bme1390I	CCNGG	3 cut(s)	159, 268, 331
Bme18I	GGWCC	3 cut(s)	100, 178, 270
BmgT120I	GGNCC	6 cut(s)	34, 100, 161, 178, 270, 484
BmiI	GGNNCC	6 cut(s)	16, 102, 163, 257, 272, 355
BmrFI	CCNGG	3 cut(s)	159, 268, 331
BmsI	GCATC	2 cut(s)	54, 324
BpiI	GAAGAC	3 cut(s)	73, 144, 364
BpmI	CTGGAG	1 cut(s)	208
BpuEI	CTTGAG	1 cut(s)	230
BpuMI	CCSGG	3 cut(s)	159, 268, 331
BsaAI	YACGTR	1 cut(s)	196
BsaI	GGTCTC	1 cut(s)	102
BsaJI	CCNNGG	4 cut(s)	6, 157, 387, 480
BsaXI	ACNNNNNCTCC	4 cut(s)	185, 191, 215, 221
Bsc4I	CCNNNNNNNGG	6 cut(s)	11, 31, 97, 250, 428, 429
BseDI	CCNNGG	4 cut(s)	6, 157, 387, 480
BseGI	GGATG	2 cut(s)	21, 339
BseLI	CCNNNNNNNGG	6 cut(s)	11, 31, 97, 250, 428, 429
BseRI	GAGGAG	2 cut(s)	199, 311
BseXI	GCAGC	1 cut(s)	353
BsgI	GTGCAG	1 cut(s)	136
Bsh1236I	CGCG	2 cut(s)	306, 327
Bsh1285I	CGRYCG	1 cut(s)	12
BshFI	GGCC	5 cut(s)	35, 90, 162, 188, 486
BsiEI	CGRYCG	1 cut(s)	12
BsiSI	CCGG	4 cut(s)	159, 268, 330, 363
BslFI	GGGAC	1 cut(s)	461
BslI	CCNNNNNNNGG	6 cut(s)	11, 31, 97, 250, 428, 429
BsmAI	GTCTC	3 cut(s)	102, 346, 364
BsmBI	CGTCTC	2 cut(s)	346, 364
BsmFI	GGGAC	1 cut(s)	461
BsnI	GGCC	5 cut(s)	35, 90, 162, 188, 486
Bso31I	GGTCTC	1 cut(s)	102
Bsp143I	GATC	2 cut(s)	255, 405
BspANI	GGCC	5 cut(s)	35, 90, 162, 188, 486
BspFNI	CGCG	2 cut(s)	306, 327
BspLI	GGNNCC	6 cut(s)	16, 102, 163, 257, 272, 355
BspPI	GGATC	2 cut(s)	250, 263
BspTNI	GGTCTC	1 cut(s)	102
BssECI	CCNNGG	4 cut(s)	6, 157, 387, 480
BssMI	GATC	2 cut(s)	255, 405
BssSI	CACGAG	1 cut(s)	182
BssT1I	CCWWGG	1 cut(s)	387
Bst2BI	CACGAG	1 cut(s)	182
Bst4CI	ACNGT	2 cut(s)	55, 508
Bst6I	CTCTTC	2 cut(s)	71, 224
BstBAI	YACGTR	1 cut(s)	196
BstC8I	GCNNGC	3 cut(s)	304, 384, 427
BstDSI	CCRYGG	1 cut(s)	480
BstENI	CCTNNNNNAGG	1 cut(s)	248
BstF5I	GGATG	2 cut(s)	21, 339
BstFNI	CGCG	2 cut(s)	306, 327
BstHHI	GCGC	1 cut(s)	329
BstKTI	GATC	2 cut(s)	258, 408
BstMAI	GTCTC	3 cut(s)	102, 346, 364
BstMBI	GATC	2 cut(s)	255, 405
BstMCI	CGRYCG	1 cut(s)	12
BstMWI	GCNNNNNNNGC	2 cut(s)	159, 312
BstSCI	CCNGG	3 cut(s)	157, 266, 329
BstUI	CGCG	2 cut(s)	306, 327
BstV1I	GCAGC	1 cut(s)	353
BstV2I	GAAGAC	3 cut(s)	73, 144, 364
BstX2I	RGATCY	1 cut(s)	255
BstYI	RGATCY	1 cut(s)	255
BsuRI	GGCC	5 cut(s)	35, 90, 162, 188, 486
BtgI	CCRYGG	1 cut(s)	480
BtsCI	GGATG	2 cut(s)	21, 339
BtsIMutI	CAGTG	1 cut(s)	504
Cac8I	GCNNGC	3 cut(s)	304, 384, 427
CfoI	GCGC	1 cut(s)	329
Cfr13I	GGNCC	6 cut(s)	34, 100, 161, 178, 270, 484
CseI	GACGC	2 cut(s)	295, 358
Csp6I	GTAC	1 cut(s)	199
CviAII	CATG	2 cut(s)	28, 379
CviQI	GTAC	1 cut(s)	199
DpnI	GATC	2 cut(s)	257, 407
DpnII	GATC	2 cut(s)	255, 405
Eam1104I	CTCTTC	2 cut(s)	71, 224
EarI	CTCTTC	2 cut(s)	71, 224
EciI	GGCGGA	2 cut(s)	133, 248
Eco130I	CCWWGG	1 cut(s)	387
Eco31I	GGTCTC	1 cut(s)	102
Eco47I	GGWCC	3 cut(s)	100, 178, 270
Eco72I	CACGTG	1 cut(s)	196
EcoNI	CCTNNNNNAGG	1 cut(s)	248
EcoO109I	RGGNCCY	1 cut(s)	178
EcoT14I	CCWWGG	1 cut(s)	387
ErhI	CCWWGG	1 cut(s)	387
Esp3I	CGTCTC	2 cut(s)	346, 364
FaeI	CATG	2 cut(s)	31, 382
FaiI	YATR	3 cut(s)	29, 380, 516
FaqI	GGGAC	1 cut(s)	461
FatI	CATG	2 cut(s)	27, 378
FauI	CCCGC	4 cut(s)	295, 311, 422, 430
Fnu4HI	GCNGC	2 cut(s)	367, 450
FokI	GGATG	2 cut(s)	8, 346
Fsp4HI	GCNGC	2 cut(s)	367, 450
GlaI	GCGC	1 cut(s)	328
GluI	GCNGC	2 cut(s)	367, 450
GsuI	CTGGAG	1 cut(s)	208
HaeIII	GGCC	5 cut(s)	35, 90, 162, 188, 486
HapII	CCGG	4 cut(s)	159, 268, 330, 363
HgaI	GACGC	2 cut(s)	295, 358
HhaI	GCGC	1 cut(s)	329
Hin1II	CATG	2 cut(s)	31, 382
Hin6I	GCGC	1 cut(s)	327
HinP1I	GCGC	1 cut(s)	327
HincII	GTYRAC	2 cut(s)	310, 394
HindII	GTYRAC	2 cut(s)	310, 394
HinfI	GANTC	2 cut(s)	140, 295
HpaII	CCGG	4 cut(s)	159, 268, 330, 363
HphI	GGTGA	3 cut(s)	61, 67, 256
Hpy166II	GTNNAC	4 cut(s)	58, 199, 310, 394
Hpy188I	TCNGA	2 cut(s)	14, 100
Hpy188III	TCNNGA	2 cut(s)	49, 403
Hpy8I	GTNNAC	4 cut(s)	58, 199, 310, 394
Hpy99I	CGWCG	6 cut(s)	173, 176, 236, 401, 458, 503
HpyAV	CCTTC	3 cut(s)	199, 214, 223
HpyCH4III	ACNGT	2 cut(s)	55, 508
HpyCH4IV	ACGT	3 cut(s)	195, 396, 498
HpyCH4V	TGCA	1 cut(s)	153
HpyF10VI	GCNNNNNNNGC	2 cut(s)	159, 312
HpySE526I	ACGT	3 cut(s)	195, 396, 498
Hsp92II	CATG	2 cut(s)	31, 382
HspAI	GCGC	1 cut(s)	327
Kzo9I	GATC	2 cut(s)	255, 405
LmnI	GCTCC	2 cut(s)	359, 432
LpnPI	CCDG	9 cut(s)	118, 172, 236, 238, 281, 343, 376, 416, 439
Lsp1109I	GCAGC	1 cut(s)	353
LweI	GCATC	2 cut(s)	54, 324
MaeII	ACGT	3 cut(s)	195, 396, 498
MaeIII	GTNAC	2 cut(s)	49, 502
MalI	GATC	2 cut(s)	257, 407
MboI	GATC	2 cut(s)	255, 405
MboII	GAAGA	6 cut(s)	58, 73, 149, 211, 364, 463
MflI	RGATCY	1 cut(s)	255
MlyI	GAGTC	1 cut(s)	134
MmeI	TCCRAC	1 cut(s)	141
MslI	CAYNNNNRTG	1 cut(s)	26
MspA1I	CMGCKG	1 cut(s)	347
MspI	CCGG	4 cut(s)	159, 268, 330, 363
MspR9I	CCNGG	3 cut(s)	159, 268, 331
MvnI	CGCG	2 cut(s)	306, 327
MwoI	GCNNNNNNNGC	2 cut(s)	159, 312
NciI	CCSGG	3 cut(s)	159, 268, 331
NdeII	GATC	2 cut(s)	255, 405
NlaIII	CATG	2 cut(s)	31, 382
NlaIV	GGNNCC	6 cut(s)	16, 102, 163, 257, 272, 355
NmeAIII	GCCGAG	2 cut(s)	316, 393
NmuCI	GTSAC	2 cut(s)	49, 502
PcsI	WCGNNNNNNNCGW	5 cut(s)	180, 453, 462, 471, 495
PfeI	GAWTC	1 cut(s)	295
PkrI	GCNGC	2 cut(s)	368, 451
PleI	GAGTC	1 cut(s)	134
PmaCI	CACGTG	1 cut(s)	196
PmlI	CACGTG	1 cut(s)	196
PpsI	GAGTC	1 cut(s)	134
Ppu21I	YACGTR	1 cut(s)	196
PpuMI	RGGWCCY	1 cut(s)	178
Psp5II	RGGWCCY	1 cut(s)	178
PspCI	CACGTG	1 cut(s)	196
PspN4I	GGNNCC	6 cut(s)	16, 102, 163, 257, 272, 355
PspPI	GGNCC	6 cut(s)	34, 100, 161, 178, 270, 484
PspPPI	RGGWCCY	1 cut(s)	178
PsuI	RGATCY	1 cut(s)	255
RsaI	GTAC	1 cut(s)	200
RsaNI	GTAC	1 cut(s)	199
RseI	CAYNNNNRTG	1 cut(s)	26
SatI	GCNGC	2 cut(s)	367, 450
Sau3AI	GATC	2 cut(s)	255, 405
Sau96I	GGNCC	6 cut(s)	34, 100, 161, 178, 270, 484
SchI	GAGTC	1 cut(s)	134
ScrFI	CCNGG	3 cut(s)	159, 268, 331
SetI	ASST	6 cut(s)	183, 198, 399, 414, 437, 501
SfaNI	GCATC	2 cut(s)	54, 324
SinI	GGWCC	3 cut(s)	100, 178, 270
SmiMI	CAYNNNNRTG	1 cut(s)	26
SmlI	CTYRAG	1 cut(s)	245
SmoI	CTYRAG	1 cut(s)	245
StyD4I	CCNGG	3 cut(s)	157, 266, 329
StyI	CCWWGG	1 cut(s)	387
TaaI	ACNGT	2 cut(s)	55, 508
TaiI	ACGT	3 cut(s)	198, 399, 501
TaqI	TCGA	3 cut(s)	129, 174, 526
TatI	WGTACW	1 cut(s)	198
TauI	GCSGC	1 cut(s)	452
TfiI	GAWTC	1 cut(s)	295
TscAI	CASTG	1 cut(s)	511
TseFI	GTSAC	2 cut(s)	49, 502
TseI	GCWGC	1 cut(s)	366
Tsp45I	GTSAC	2 cut(s)	49, 502
TspDTI	ATGAA	2 cut(s)	73, 84
TspGWI	ACGGA	2 cut(s)	157, 346
TspRI	CASTG	1 cut(s)	511
VpaK11BI	GGWCC	3 cut(s)	100, 178, 270
XagI	CCTNNNNNAGG	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.