Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0007099

Physical Location & Seq

Genomic Coordinates Reverse (-)

26159363 .. 26160074

Gene Structure 712 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G242900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGCCATCCCGCGGCGGCACCAGCGTCCACATAGTGGCCCTAGACGGTATCGTGAACGTGAACTCCCTCTTCACCTTGGCCGTCTTCATCGGCCTGACCTGGGACCCCAACGACCCGAACAACACCCTGATCGAGGCAAACGACCCCACCACCTGCCGCGCCGGGCCCCGCGTCGCGGAGGACCTCGTGGCCTTCCACGTGTACTCCTTCAGCTCCTTCCTCTTCTCCAGCCTCGTCGCCGTCGCCCTCAAGCAGGCCATCCGGATCACCCGAACCCCGTCCTACCACCCGGCCGAGCTTCTCGCCCGGGTCAACAGCTCCGCCCTCCGGGTCGGGATGCTCGTCTCGGGTGCGGGTTCGGTTTGCGGGTGCGTGTTCCTGATGCTGGCTCTCATCAACGTGGTGCAGATCAAGCTCGGGACTTTGGGTTGCGGGAGCTCCCATACTTTGGCCGCCGTGATCCCGCTTGTCATCTTCGTCCCCGTTGCGCTCCTCATCTATGTTTGTATCGTTTTGTACGCTTTTACGCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

178

Amino Acids

18.77

Weight (kDa)

8.36

Isoelectric Point (pI)

25.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007099)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05950
fragaria_vesca	FvH4_3g37210 FvH4_7g23601
malus_domestica	MD01G1141800.v1.1 MD11G1091000.v1.1
prunus_persica	Prupe.2G242900_v2.0.a1 Prupe.6G067200_v2.0.a1
pyrus_communis	pycom01g16210 pycom11g07570
rosa_chinensis	RchiOBHm_Chr1g0368851 RchiOBHm_Chr5g0066951
rosa_laevigata	RLG00000027182 RLG00000027184 RLG00000027186 RLG00000035896
rosa_multiflora	Rmu_sc0008378.1_g000006 Rmu_sc0012799.1_g000008 Rmu_sc0030248.1_g000001
rosa_roxburghii	Rroxscaffold_1G00014170
rosa_rugosa	Rorug01G0345300 Rorug05G0380000
rosa_samantha	Rh1AG352400 Rh5BG456700 Rh5CG478800
rosa_wichuraiana	Rw5G041120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	161
Acc36I	ACCTGC	1 cut(s)	161
AccB1I	GGYRCC	1 cut(s)	17
AccB7I	CCANNNNNTGG	2 cut(s)	34, 448
AccII	CGCG	5 cut(s)	12, 159, 171, 176, 529
AccIII	TCCGGA	1 cut(s)	261
AclWI	GGATC	2 cut(s)	272, 454
AcoI	YGGCCR	3 cut(s)	78, 291, 450
AcuI	CTGAAG	1 cut(s)	193
AcvI	CACGTG	1 cut(s)	199
AdeI	CACNNNGTG	1 cut(s)	34
AfaI	GTAC	2 cut(s)	203, 518
AfiI	CCNNNNNNNGG	9 cut(s)	11, 34, 100, 133, 175, 253, 327, 385, 448
AflIII	ACRYGT	1 cut(s)	198
AjnI	CCWGG	1 cut(s)	98
AloI	GAACNNNNNNTCC	2 cut(s)	47, 79
AluBI	AGCT	5 cut(s)	213, 298, 318, 415, 438
AluI	AGCT	5 cut(s)	213, 298, 318, 415, 438
Alw21I	GWGCWC	1 cut(s)	440
Alw26I	GTCTC	1 cut(s)	349
AlwI	GGATC	2 cut(s)	272, 454
Ama87I	CYCGRG	3 cut(s)	306, 346, 416
Aor13HI	TCCGGA	1 cut(s)	261
AoxI	GGCC	8 cut(s)	36, 78, 91, 164, 189, 255, 291, 450
ApaI	GGGCCC	1 cut(s)	168
AspLEI	GCGC	3 cut(s)	161, 490, 531
AspS9I	GGNCC	5 cut(s)	37, 103, 164, 165, 181
AsuC2I	CCSGG	5 cut(s)	163, 290, 307, 308, 329
AsuHPI	GGTGA	2 cut(s)	64, 259
AvaI	CYCGRG	3 cut(s)	306, 346, 416
AvaII	GGWCC	2 cut(s)	103, 181
BaeGI	GKGCMC	1 cut(s)	168
BanI	GGYRCC	1 cut(s)	17
BanII	GRGCYC	2 cut(s)	168, 440
BauI	CACGAG	1 cut(s)	185
BbrPI	CACGTG	1 cut(s)	199
BbsI	GAAGAC	1 cut(s)	76
Bbv12I	GWGCWC	1 cut(s)	440
BccI	CCATC	2 cut(s)	13, 266
BceAI	ACGGC	3 cut(s)	65, 224, 440
BciT130I	CCWGG	1 cut(s)	100
BcnI	CCSGG	5 cut(s)	163, 290, 307, 308, 329
BcoDI	GTCTC	1 cut(s)	349
BfaI	CTAG	2 cut(s)	41, 532
BfuAI	ACCTGC	1 cut(s)	161
BisI	GCNGC	4 cut(s)	13, 16, 157, 453
BlsI	GCNGC	4 cut(s)	14, 17, 158, 454
Bme1390I	CCNGG	6 cut(s)	100, 163, 290, 307, 308, 329
Bme18I	GGWCC	2 cut(s)	103, 181
BmeT110I	CYCGRG	3 cut(s)	306, 346, 416
BmgT120I	GGNCC	5 cut(s)	37, 103, 164, 165, 181
BmiI	GGNNCC	5 cut(s)	19, 104, 105, 166, 167
BmrFI	CCNGG	6 cut(s)	100, 163, 290, 307, 308, 329
BmsI	GCATC	2 cut(s)	327, 372
BpiI	GAAGAC	1 cut(s)	76
BpmI	CTGGAG	1 cut(s)	211
BpuEI	CTTGAG	1 cut(s)	233
BpuMI	CCSGG	5 cut(s)	163, 290, 307, 308, 329
BsaAI	YACGTR	1 cut(s)	199
BsaJI	CCNNGG	4 cut(s)	10, 75, 99, 306
BsaWI	WCCGGW	1 cut(s)	261
BsaXI	ACNNNNNCTCC	4 cut(s)	47, 77, 188, 218
Bsc4I	CCNNNNNNNGG	9 cut(s)	11, 34, 100, 133, 175, 253, 327, 385, 448
BseAI	TCCGGA	1 cut(s)	261
BseBI	CCWGG	1 cut(s)	100
BseDI	CCNNGG	4 cut(s)	10, 75, 99, 306
BseGI	GGATG	3 cut(s)	5, 258, 342
BseLI	CCNNNNNNNGG	9 cut(s)	11, 34, 100, 133, 175, 253, 327, 385, 448
BseRI	GAGGAG	1 cut(s)	482
BseSI	GKGCMC	1 cut(s)	168
BseX3I	CGGCCG	1 cut(s)	291
BsgI	GTGCAG	1 cut(s)	425
Bsh1236I	CGCG	5 cut(s)	12, 159, 171, 176, 529
Bsh1285I	CGRYCG	1 cut(s)	294
BshFI	GGCC	8 cut(s)	38, 80, 93, 166, 191, 257, 293, 452
BshNI	GGYRCC	1 cut(s)	17
BsiEI	CGRYCG	1 cut(s)	294
BsiHKAI	GWGCWC	1 cut(s)	440
BsiHKCI	CYCGRG	3 cut(s)	306, 346, 416
BsiSI	CCGG	5 cut(s)	162, 262, 290, 307, 328
BslFI	GGGAC	3 cut(s)	116, 433, 464
BslI	CCNNNNNNNGG	9 cut(s)	11, 34, 100, 133, 175, 253, 327, 385, 448
BsmAI	GTCTC	1 cut(s)	349
BsmBI	CGTCTC	1 cut(s)	349
BsmFI	GGGAC	3 cut(s)	116, 433, 464
BsnI	GGCC	8 cut(s)	38, 80, 93, 166, 191, 257, 293, 452
BsoBI	CYCGRG	3 cut(s)	306, 346, 416
Bsp120I	GGGCCC	1 cut(s)	164
Bsp1286I	GDGCHC	2 cut(s)	168, 440
Bsp13I	TCCGGA	1 cut(s)	261
Bsp143I	GATC	4 cut(s)	129, 264, 408, 459
BspANI	GGCC	8 cut(s)	38, 80, 93, 166, 191, 257, 293, 452
BspEI	TCCGGA	1 cut(s)	261
BspFNI	CGCG	5 cut(s)	12, 159, 171, 176, 529
BspLI	GGNNCC	5 cut(s)	19, 104, 105, 166, 167
BspMI	ACCTGC	1 cut(s)	161
BspPI	GGATC	2 cut(s)	272, 454
BspT107I	GGYRCC	1 cut(s)	17
BssECI	CCNNGG	4 cut(s)	10, 75, 99, 306
BssMI	GATC	4 cut(s)	129, 264, 408, 459
BssSI	CACGAG	1 cut(s)	185
BssT1I	CCWWGG	1 cut(s)	75
Bst2BI	CACGAG	1 cut(s)	185
Bst2UI	CCWGG	1 cut(s)	100
Bst4CI	ACNGT	1 cut(s)	47
Bst6I	CTCTTC	2 cut(s)	74, 227
BstBAI	YACGTR	1 cut(s)	199
BstC8I	GCNNGC	2 cut(s)	255, 387
BstDSI	CCRYGG	1 cut(s)	10
BstENI	CCTNNNNNAGG	2 cut(s)	131, 251
BstF5I	GGATG	3 cut(s)	5, 258, 342
BstFNI	CGCG	5 cut(s)	12, 159, 171, 176, 529
BstHHI	GCGC	3 cut(s)	161, 490, 531
BstKTI	GATC	4 cut(s)	132, 267, 411, 462
BstMAI	GTCTC	1 cut(s)	349
BstMBI	GATC	4 cut(s)	129, 264, 408, 459
BstMCI	CGRYCG	1 cut(s)	294
BstMWI	GCNNNNNNNGC	2 cut(s)	21, 412
BstNI	CCWGG	1 cut(s)	100
BstSCI	CCNGG	6 cut(s)	98, 161, 288, 305, 306, 327
BstSLI	GKGCMC	1 cut(s)	168
BstUI	CGCG	5 cut(s)	12, 159, 171, 176, 529
BstV2I	GAAGAC	1 cut(s)	76
BstZI	CGGCCG	1 cut(s)	291
BsuRI	GGCC	8 cut(s)	38, 80, 93, 166, 191, 257, 293, 452
BtgI	CCRYGG	1 cut(s)	10
BtsCI	GGATG	3 cut(s)	5, 258, 342
BveI	ACCTGC	1 cut(s)	161
Cac8I	GCNNGC	2 cut(s)	255, 387
CfoI	GCGC	3 cut(s)	161, 490, 531
Cfr13I	GGNCC	5 cut(s)	37, 103, 164, 165, 181
Cfr42I	CCGCGG	1 cut(s)	13
Cfr9I	CCCGGG	1 cut(s)	306
CseI	GACGC	2 cut(s)	13, 160
Csp6I	GTAC	2 cut(s)	202, 517
CviQI	GTAC	2 cut(s)	202, 517
DpnI	GATC	4 cut(s)	131, 266, 410, 461
DpnII	GATC	4 cut(s)	129, 264, 408, 459
DraIII	CACNNNGTG	1 cut(s)	34
EaeI	YGGCCR	3 cut(s)	78, 291, 450
EagI	CGGCCG	1 cut(s)	291
Eam1104I	CTCTTC	2 cut(s)	74, 227
EarI	CTCTTC	2 cut(s)	74, 227
EciI	GGCGGA	1 cut(s)	310
Ecl136II	GAGCTC	1 cut(s)	438
EclXI	CGGCCG	1 cut(s)	291
Eco130I	CCWWGG	1 cut(s)	75
Eco24I	GRGCYC	2 cut(s)	168, 440
Eco47I	GGWCC	2 cut(s)	103, 181
Eco52I	CGGCCG	1 cut(s)	291
Eco53kI	GAGCTC	1 cut(s)	438
Eco57I	CTGAAG	1 cut(s)	193
Eco72I	CACGTG	1 cut(s)	199
Eco88I	CYCGRG	3 cut(s)	306, 346, 416
EcoICRI	GAGCTC	1 cut(s)	438
EcoNI	CCTNNNNNAGG	2 cut(s)	131, 251
EcoO109I	RGGNCCY	3 cut(s)	103, 165, 181
EcoRII	CCWGG	1 cut(s)	98
EcoT14I	CCWWGG	1 cut(s)	75
EcoT38I	GRGCYC	2 cut(s)	168, 440
ErhI	CCWWGG	1 cut(s)	75
Esp3I	CGTCTC	1 cut(s)	349
FaiI	YATR	3 cut(s)	32, 444, 501
FaqI	GGGAC	3 cut(s)	116, 433, 464
FauI	CCCGC	6 cut(s)	17, 176, 346, 359, 425, 471
Fnu4HI	GCNGC	4 cut(s)	13, 16, 157, 453
FokI	GGATG	2 cut(s)	245, 349
FriOI	GRGCYC	2 cut(s)	168, 440
Fsp4HI	GCNGC	4 cut(s)	13, 16, 157, 453
FspBI	CTAG	2 cut(s)	41, 532
GlaI	GCGC	3 cut(s)	160, 489, 530
GluI	GCNGC	4 cut(s)	13, 16, 157, 453
GsuI	CTGGAG	1 cut(s)	211
HaeIII	GGCC	8 cut(s)	38, 80, 93, 166, 191, 257, 293, 452
HapII	CCGG	5 cut(s)	162, 262, 290, 307, 328
HgaI	GACGC	2 cut(s)	13, 160
HhaI	GCGC	3 cut(s)	161, 490, 531
Hin6I	GCGC	3 cut(s)	159, 488, 529
HinP1I	GCGC	3 cut(s)	159, 488, 529
HincII	GTYRAC	1 cut(s)	313
HindII	GTYRAC	1 cut(s)	313
HpaII	CCGG	5 cut(s)	162, 262, 290, 307, 328
HphI	GGTGA	2 cut(s)	64, 259
Hpy166II	GTNNAC	5 cut(s)	28, 55, 61, 202, 313
Hpy188III	TCNNGA	5 cut(s)	52, 262, 334, 379, 418
Hpy8I	GTNNAC	5 cut(s)	28, 55, 61, 202, 313
Hpy99I	CGWCG	3 cut(s)	176, 239, 245
HpyAV	CCTTC	3 cut(s)	202, 217, 226
HpyCH4III	ACNGT	1 cut(s)	47
HpyCH4IV	ACGT	3 cut(s)	57, 198, 399
HpyCH4V	TGCA	1 cut(s)	406
HpyF10VI	GCNNNNNNNGC	2 cut(s)	21, 412
HpySE526I	ACGT	3 cut(s)	57, 198, 399
HspAI	GCGC	3 cut(s)	159, 488, 529
KflI	GGGWCCC	1 cut(s)	103
Kpn2I	TCCGGA	1 cut(s)	261
KspI	CCGCGG	1 cut(s)	13
Kzo9I	GATC	4 cut(s)	129, 264, 408, 459
LmnI	GCTCC	5 cut(s)	218, 323, 435, 443, 495
LweI	GCATC	2 cut(s)	327, 372
MaeI	CTAG	2 cut(s)	41, 532
MaeII	ACGT	3 cut(s)	57, 198, 399
MalI	GATC	4 cut(s)	131, 266, 410, 461
MboI	GATC	4 cut(s)	129, 264, 408, 459
MboII	GAAGA	4 cut(s)	61, 76, 214, 466
MhlI	GDGCHC	2 cut(s)	168, 440
MnlI	CCTC	9 cut(s)	77, 127, 172, 194, 230, 242, 257, 335, 503
MroI	TCCGGA	1 cut(s)	261
MslI	CAYNNNNRTG	1 cut(s)	398
MspA1I	CMGCKG	1 cut(s)	12
MspI	CCGG	5 cut(s)	162, 262, 290, 307, 328
MspR9I	CCNGG	6 cut(s)	100, 163, 290, 307, 308, 329
MvaI	CCWGG	1 cut(s)	100
MvnI	CGCG	5 cut(s)	12, 159, 171, 176, 529
MwoI	GCNNNNNNNGC	2 cut(s)	21, 412
NciI	CCSGG	5 cut(s)	163, 290, 307, 308, 329
NdeII	GATC	4 cut(s)	129, 264, 408, 459
NlaIV	GGNNCC	5 cut(s)	19, 104, 105, 166, 167
NmeAIII	GCCGAG	1 cut(s)	319
PaqCI	CACCTGC	1 cut(s)	161
PcsI	WCGNNNNNNNCGW	2 cut(s)	138, 339
PflMI	CCANNNNNTGG	2 cut(s)	34, 448
PkrI	GCNGC	4 cut(s)	14, 17, 158, 454
PmaCI	CACGTG	1 cut(s)	199
PmlI	CACGTG	1 cut(s)	199
Ppu21I	YACGTR	1 cut(s)	199
PpuMI	RGGWCCY	2 cut(s)	103, 181
Psp124BI	GAGCTC	1 cut(s)	440
Psp5II	RGGWCCY	2 cut(s)	103, 181
Psp6I	CCWGG	1 cut(s)	98
PspCI	CACGTG	1 cut(s)	199
PspGI	CCWGG	1 cut(s)	98
PspN4I	GGNNCC	5 cut(s)	19, 104, 105, 166, 167
PspOMI	GGGCCC	1 cut(s)	164
PspPI	GGNCC	5 cut(s)	37, 103, 164, 165, 181
PspPPI	RGGWCCY	2 cut(s)	103, 181
RsaI	GTAC	2 cut(s)	203, 518
RsaNI	GTAC	2 cut(s)	202, 517
RseI	CAYNNNNRTG	1 cut(s)	398
SacI	GAGCTC	1 cut(s)	440
SacII	CCGCGG	1 cut(s)	13
SatI	GCNGC	4 cut(s)	13, 16, 157, 453
Sau3AI	GATC	4 cut(s)	129, 264, 408, 459
Sau96I	GGNCC	5 cut(s)	37, 103, 164, 165, 181
ScrFI	CCNGG	6 cut(s)	100, 163, 290, 307, 308, 329
SduI	GDGCHC	2 cut(s)	168, 440
SfaNI	GCATC	2 cut(s)	327, 372
Sfr303I	CCGCGG	1 cut(s)	13
SgrBI	CCGCGG	1 cut(s)	13
SinI	GGWCC	2 cut(s)	103, 181
SmaI	CCCGGG	1 cut(s)	308
SmiMI	CAYNNNNRTG	1 cut(s)	398
SmlI	CTYRAG	1 cut(s)	248
SmoI	CTYRAG	1 cut(s)	248
SspMI	CTAG	2 cut(s)	41, 532
SstI	GAGCTC	1 cut(s)	440
StyD4I	CCNGG	6 cut(s)	98, 161, 288, 305, 306, 327
StyI	CCWWGG	1 cut(s)	75
TaaI	ACNGT	1 cut(s)	47
TaiI	ACGT	3 cut(s)	60, 201, 402
TaqI	TCGA	1 cut(s)	132
TatI	WGTACW	1 cut(s)	201
TauI	GCSGC	4 cut(s)	15, 18, 159, 455
TspDTI	ATGAA	1 cut(s)	76
TspMI	CCCGGG	1 cut(s)	306
Van91I	CCANNNNNTGG	2 cut(s)	34, 448
VpaK11BI	GGWCC	2 cut(s)	103, 181
XagI	CCTNNNNNAGG	2 cut(s)	131, 251
XmaI	CCCGGG	1 cut(s)	306
XspI	CTAG	2 cut(s)	41, 532

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.