Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0007099

Physical Location & Seq

Genomic Coordinates Forward (+)

9363977 .. 9364430

Gene Structure 454 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027186

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGCGCAGGAGAATGTGGTAACATTAGCACACAGAGAGCTGGTTGGAAGCTTGATCCATGCATTGCAGCAAGTAAAGACCGGAACGAGAAGCAAACGGAGCGAAATTGCACCAACTATTCCAAGATTCTCGCCCGAGTCAACAGCTCCCTCCTCCGCGCCGGGATGCTCGTCTCCGGTATCGGCTTCGTCTCCGGCTGCGTCTTCCATGCTCGCCTTGGTCAACGTCGTCCAGATCAAGCTCGGCACTCCCGCCTGGGGGAGCTACCACACTCTCGCCGCTGTCATTCCTCTCGTCATCTTCGTTCCCGTGGCCCTCCTCATCTATGTCGTCACTGTTCTCTATGCTTTCACTCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

120

Amino Acids

12.51

Weight (kDa)

9.74

Isoelectric Point (pI)

59.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007099)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05950
fragaria_vesca	FvH4_3g37210 FvH4_7g23601
malus_domestica	MD01G1141800.v1.1 MD11G1091000.v1.1
prunus_persica	Prupe.2G242900_v2.0.a1 Prupe.6G067200_v2.0.a1
pyrus_communis	pycom01g16210 pycom11g07570
rosa_chinensis	RchiOBHm_Chr1g0368851 RchiOBHm_Chr5g0066951
rosa_laevigata	RLG00000027182 RLG00000027184 RLG00000027186 RLG00000035896
rosa_multiflora	Rmu_sc0008378.1_g000006 Rmu_sc0012799.1_g000008 Rmu_sc0030248.1_g000001
rosa_roxburghii	Rroxscaffold_1G00014170
rosa_rugosa	Rorug01G0345300 Rorug05G0380000
rosa_samantha	Rh1AG352400 Rh5BG456700 Rh5CG478800
rosa_wichuraiana	Rw5G041120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	158
AciI	CCGC	3 cut(s)	156, 252, 279
AclWI	GGATC	1 cut(s)	49
AfiI	CCNNNNNNNGG	2 cut(s)	257, 258
AjnI	CCWGG	1 cut(s)	254
AluBI	AGCT	5 cut(s)	40, 51, 146, 241, 264
AluI	AGCT	5 cut(s)	40, 51, 146, 241, 264
Alw26I	GTCTC	2 cut(s)	177, 195
AlwI	GGATC	1 cut(s)	49
Ama87I	CYCGRG	1 cut(s)	134
AoxI	GGCC	1 cut(s)	312
ApeKI	GCWGC	2 cut(s)	67, 197
AspLEI	GCGC	2 cut(s)	7, 160
AspS9I	GGNCC	1 cut(s)	313
AsuC2I	CCSGG	1 cut(s)	162
AvaI	CYCGRG	1 cut(s)	134
BbsI	GAAGAC	1 cut(s)	195
BbvI	GCAGC	2 cut(s)	79, 184
BciT130I	CCWGG	1 cut(s)	256
BcnI	CCSGG	1 cut(s)	162
BcoDI	GTCTC	2 cut(s)	177, 195
BisI	GCNGC	3 cut(s)	68, 198, 279
BlsI	GCNGC	3 cut(s)	69, 199, 280
Bme1390I	CCNGG	2 cut(s)	162, 256
BmeT110I	CYCGRG	1 cut(s)	134
BmgT120I	GGNCC	1 cut(s)	313
BmrFI	CCNGG	2 cut(s)	162, 256
BmsI	GCATC	1 cut(s)	155
BpiI	GAAGAC	1 cut(s)	195
BpuMI	CCSGG	1 cut(s)	162
BsaJI	CCNNGG	3 cut(s)	216, 255, 309
BsaWI	WCCGGW	2 cut(s)	80, 175
Bsc4I	CCNNNNNNNGG	2 cut(s)	257, 258
Bse3DI	GCAATG	1 cut(s)	62
BseBI	CCWGG	1 cut(s)	256
BseDI	CCNNGG	3 cut(s)	216, 255, 309
BseGI	GGATG	1 cut(s)	170
BseLI	CCNNNNNNNGG	2 cut(s)	257, 258
BseMI	GCAATG	1 cut(s)	62
BseRI	GAGGAG	2 cut(s)	142, 308
BseXI	GCAGC	2 cut(s)	79, 184
Bsh1236I	CGCG	1 cut(s)	158
BshFI	GGCC	1 cut(s)	314
BsiHKCI	CYCGRG	1 cut(s)	134
BsiSI	CCGG	4 cut(s)	81, 161, 176, 194
BslI	CCNNNNNNNGG	2 cut(s)	257, 258
BsmAI	GTCTC	2 cut(s)	177, 195
BsmBI	CGTCTC	2 cut(s)	177, 195
BsnI	GGCC	1 cut(s)	314
BsoBI	CYCGRG	1 cut(s)	134
Bsp143I	GATC	2 cut(s)	54, 234
BspACI	CCGC	3 cut(s)	156, 252, 279
BspANI	GGCC	1 cut(s)	314
BspFNI	CGCG	1 cut(s)	158
BspPI	GGATC	1 cut(s)	49
BsrDI	GCAATG	1 cut(s)	62
BssECI	CCNNGG	3 cut(s)	216, 255, 309
BssMI	GATC	2 cut(s)	54, 234
BssT1I	CCWWGG	1 cut(s)	216
Bst2UI	CCWGG	1 cut(s)	256
Bst4CI	ACNGT	1 cut(s)	337
BstC8I	GCNNGC	1 cut(s)	213
BstDSI	CCRYGG	1 cut(s)	309
BstF5I	GGATG	1 cut(s)	170
BstFNI	CGCG	1 cut(s)	158
BstHHI	GCGC	2 cut(s)	7, 160
BstKTI	GATC	2 cut(s)	57, 237
BstMAI	GTCTC	2 cut(s)	177, 195
BstMBI	GATC	2 cut(s)	54, 234
BstMWI	GCNNNNNNNGC	1 cut(s)	99
BstNI	CCWGG	1 cut(s)	256
BstSCI	CCNGG	2 cut(s)	160, 254
BstUI	CGCG	1 cut(s)	158
BstV1I	GCAGC	2 cut(s)	79, 184
BstV2I	GAAGAC	1 cut(s)	195
BsuRI	GGCC	1 cut(s)	314
BtgI	CCRYGG	1 cut(s)	309
BtsCI	GGATG	1 cut(s)	170
BtsIMutI	CAGTG	1 cut(s)	333
Cac8I	GCNNGC	1 cut(s)	213
CfoI	GCGC	2 cut(s)	7, 160
Cfr13I	GGNCC	1 cut(s)	313
CseI	GACGC	1 cut(s)	189
CviAII	CATG	2 cut(s)	59, 208
CviJI	RGCY	8 cut(s)	40, 51, 146, 185, 197, 241, 264, 314
CviKI_1	RGCY	8 cut(s)	40, 51, 146, 185, 197, 241, 264, 314
DpnI	GATC	2 cut(s)	56, 236
DpnII	GATC	2 cut(s)	54, 234
Eco130I	CCWWGG	1 cut(s)	216
Eco88I	CYCGRG	1 cut(s)	134
EcoRII	CCWGG	1 cut(s)	254
EcoT14I	CCWWGG	1 cut(s)	216
EcoT22I	ATGCAT	1 cut(s)	64
ErhI	CCWWGG	1 cut(s)	216
Esp3I	CGTCTC	2 cut(s)	177, 195
FaeI	CATG	2 cut(s)	62, 211
FaiI	YATR	4 cut(s)	60, 209, 327, 345
FatI	CATG	2 cut(s)	58, 207
FauI	CCCGC	1 cut(s)	259
Fnu4HI	GCNGC	3 cut(s)	68, 198, 279
FokI	GGATG	1 cut(s)	177
Fsp4HI	GCNGC	3 cut(s)	68, 198, 279
GlaI	GCGC	2 cut(s)	6, 159
GluI	GCNGC	3 cut(s)	68, 198, 279
HaeIII	GGCC	1 cut(s)	314
HapII	CCGG	4 cut(s)	81, 161, 176, 194
HgaI	GACGC	1 cut(s)	189
HhaI	GCGC	2 cut(s)	7, 160
Hin1II	CATG	2 cut(s)	62, 211
Hin6I	GCGC	2 cut(s)	5, 158
HinP1I	GCGC	2 cut(s)	5, 158
HincII	GTYRAC	2 cut(s)	141, 223
HindII	GTYRAC	2 cut(s)	141, 223
HindIII	AAGCTT	1 cut(s)	49
HinfI	GANTC	2 cut(s)	126, 137
HpaII	CCGG	4 cut(s)	81, 161, 176, 194
Hpy166II	GTNNAC	2 cut(s)	141, 223
Hpy188III	TCNNGA	1 cut(s)	232
Hpy8I	GTNNAC	2 cut(s)	141, 223
Hpy99I	CGWCG	1 cut(s)	230
HpyCH4III	ACNGT	1 cut(s)	337
HpyCH4IV	ACGT	1 cut(s)	225
HpyCH4V	TGCA	3 cut(s)	62, 67, 110
HpyF10VI	GCNNNNNNNGC	1 cut(s)	99
HpySE526I	ACGT	1 cut(s)	225
Hsp92II	CATG	2 cut(s)	62, 211
HspAI	GCGC	2 cut(s)	5, 158
Kzo9I	GATC	2 cut(s)	54, 234
LmnI	GCTCC	3 cut(s)	99, 151, 261
LpnPI	CCDG	8 cut(s)	26, 94, 174, 189, 207, 241, 245, 268
Lsp1109I	GCAGC	2 cut(s)	79, 184
LweI	GCATC	1 cut(s)	155
MaeII	ACGT	1 cut(s)	225
MaeIII	GTNAC	2 cut(s)	19, 331
MalI	GATC	2 cut(s)	56, 236
MboI	GATC	2 cut(s)	54, 234
MboII	GAAGA	2 cut(s)	195, 292
MluCI	AATT	1 cut(s)	105
MlyI	GAGTC	1 cut(s)	146
MmeI	TCCRAC	1 cut(s)	25
MnlI	CCTC	5 cut(s)	160, 163, 300, 326, 329
Mph1103I	ATGCAT	1 cut(s)	64
MspA1I	CMGCKG	1 cut(s)	281
MspI	CCGG	4 cut(s)	81, 161, 176, 194
MspR9I	CCNGG	2 cut(s)	162, 256
MvaI	CCWGG	1 cut(s)	256
MvnI	CGCG	1 cut(s)	158
MwoI	GCNNNNNNNGC	1 cut(s)	99
NciI	CCSGG	1 cut(s)	162
NdeII	GATC	2 cut(s)	54, 234
NlaIII	CATG	2 cut(s)	62, 211
NmeAIII	GCCGAG	1 cut(s)	222
NmuCI	GTSAC	1 cut(s)	331
NsiI	ATGCAT	1 cut(s)	64
PcsI	WCGNNNNNNNCGW	1 cut(s)	300
PfeI	GAWTC	1 cut(s)	126
PkrI	GCNGC	3 cut(s)	69, 199, 280
PleI	GAGTC	1 cut(s)	145
PpsI	GAGTC	1 cut(s)	145
Psp6I	CCWGG	1 cut(s)	254
PspGI	CCWGG	1 cut(s)	254
PspPI	GGNCC	1 cut(s)	313
SatI	GCNGC	3 cut(s)	68, 198, 279
Sau3AI	GATC	2 cut(s)	54, 234
Sau96I	GGNCC	1 cut(s)	313
SchI	GAGTC	1 cut(s)	146
ScrFI	CCNGG	2 cut(s)	162, 256
SetI	ASST	6 cut(s)	42, 53, 148, 228, 243, 266
SfaNI	GCATC	1 cut(s)	155
Sse9I	AATT	1 cut(s)	105
SsiI	CCGC	3 cut(s)	156, 252, 279
StyD4I	CCNGG	2 cut(s)	160, 254
StyI	CCWWGG	1 cut(s)	216
TaaI	ACNGT	1 cut(s)	337
TaiI	ACGT	1 cut(s)	228
TaqI	TCGA	1 cut(s)	355
TasI	AATT	1 cut(s)	105
TauI	GCSGC	1 cut(s)	281
TfiI	GAWTC	1 cut(s)	126
TscAI	CASTG	1 cut(s)	340
TseFI	GTSAC	1 cut(s)	331
TseI	GCWGC	2 cut(s)	67, 197
Tsp45I	GTSAC	1 cut(s)	331
TspGWI	ACGGA	1 cut(s)	112
TspRI	CASTG	1 cut(s)	340
XcmI	CCANNNNNNNNNTGG	1 cut(s)	214
Zsp2I	ATGCAT	1 cut(s)	64

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.