RLG00000027184

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0007099
Physical Location & Seq
Forward (+)
9352805 .. 9354510
1706 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027184

Sequence Viewer

Length: 531 bp
ATGCCCTCGGCCGGAACCGCCATCCACATGACGGCCCTTGACGGCATCGTCACCGTGAACTCCCTCTTCACCCTCGCCGTCTTCATCGGCCTTACATGGGACCCCAGAGACCCCTCCAACACCCTCATCGAGCAAGAAGACTCCGCCGCCTGCACCCCCGGCCCCTCCGTCGCCGAGGACCTCGTGGCCTTCCACGTCTACTCCTTCTCCTCCTTCCTCTTCTCCAGCCTCGTCGCCCTCGGCCTCAAGCAGGGGATCCGCCTCACCCGGAGCCCCTCCTACCACCCCGCCGAGATTCTCGCCCGCGTCAACAGCTCCCTCCTCCGCGCCGGGATGCTCGTCTCCGGTGTCGGCTCCGTCTCCGGCTGCGTCTTCCTCATGCTCGCCTTGGTCAACGTCGTCCAGATCAAGCTCGGCACTCTCGCCTGCGGGAGCTACCACACTCTTGCCGCCGTCATTCCTCTCGTCATCTTCGTCCCCGTGGCGCTCCTCATCTATGTCGTCACTGTTCTCTATGCTTTCACTCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

177

Amino Acids

18.61

Weight (kDa)

6.38

Isoelectric Point (pI)

42.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 47
AccI GTMKAC 1 cut(s) 198
AccII CGCG 2 cut(s) 306, 327
AciI CCGC 9 cut(s) 18, 144, 147, 259, 288, 304, 325, 429, 450
AclWI GGATC 2 cut(s) 250, 263
AcoI YGGCCR 1 cut(s) 9
AfiI CCNNNNNNNGG 4 cut(s) 11, 31, 97, 250
AjiI CACGTC 1 cut(s) 196
AluBI AGCT 3 cut(s) 315, 412, 435
AluI AGCT 3 cut(s) 315, 412, 435
Alw26I GTCTC 3 cut(s) 102, 346, 364
AlwI GGATC 2 cut(s) 250, 263
AoxI GGCC 6 cut(s) 9, 33, 88, 160, 186, 241
ApeKI GCWGC 1 cut(s) 366
AspLEI GCGC 2 cut(s) 329, 487
AspS9I GGNCC 4 cut(s) 34, 100, 161, 178
AsuC2I CCSGG 3 cut(s) 159, 268, 331
AsuHPI GGTGA 3 cut(s) 43, 61, 256
AvaII GGWCC 2 cut(s) 100, 178
BamHI GGATCC 1 cut(s) 255
BanII GRGCYC 1 cut(s) 275
BauI CACGAG 1 cut(s) 182
BbsI GAAGAC 3 cut(s) 73, 144, 364
BbvI GCAGC 1 cut(s) 353
BccI CCATC 1 cut(s) 29
BceAI ACGGC 4 cut(s) 48, 58, 62, 437
BcnI CCSGG 3 cut(s) 159, 268, 331
BcoDI GTCTC 3 cut(s) 102, 346, 364
BfoI RGCGCY 1 cut(s) 488
BisI GCNGC 3 cut(s) 147, 367, 450
BlsI GCNGC 3 cut(s) 148, 368, 451
Bme1390I CCNGG 3 cut(s) 159, 268, 331
Bme18I GGWCC 2 cut(s) 100, 178
BmgBI CACGTC 1 cut(s) 196
BmgT120I GGNCC 4 cut(s) 34, 100, 161, 178
BmiI GGNNCC 7 cut(s) 16, 101, 102, 163, 257, 272, 355
BmrFI CCNGG 3 cut(s) 159, 268, 331
BmsI GCATC 2 cut(s) 54, 324
BpiI GAAGAC 3 cut(s) 73, 144, 364
BpmI CTGGAG 1 cut(s) 208
BpuEI CTTGAG 1 cut(s) 230
BpuMI CCSGG 3 cut(s) 159, 268, 331
BsaI GGTCTC 1 cut(s) 102
BsaJI CCNNGG 6 cut(s) 6, 157, 174, 238, 387, 480
BsaWI WCCGGW 1 cut(s) 344
BsaXI ACNNNNNCTCC 4 cut(s) 185, 191, 215, 221
Bsc4I CCNNNNNNNGG 4 cut(s) 11, 31, 97, 250
BseDI CCNNGG 6 cut(s) 6, 157, 174, 238, 387, 480
BseGI GGATG 2 cut(s) 21, 339
BseLI CCNNNNNNNGG 4 cut(s) 11, 31, 97, 250
BseRI GAGGAG 3 cut(s) 199, 311, 479
BseX3I CGGCCG 1 cut(s) 9
BseXI GCAGC 1 cut(s) 353
BsgI GTGCAG 1 cut(s) 136
Bsh1236I CGCG 2 cut(s) 306, 327
Bsh1285I CGRYCG 1 cut(s) 12
BshFI GGCC 6 cut(s) 11, 35, 90, 162, 188, 243
BsiEI CGRYCG 1 cut(s) 12
BsiSI CCGG 6 cut(s) 12, 159, 268, 330, 345, 363
BslFI GGGAC 2 cut(s) 113, 461
BslI CCNNNNNNNGG 4 cut(s) 11, 31, 97, 250
BsmAI GTCTC 3 cut(s) 102, 346, 364
BsmBI CGTCTC 2 cut(s) 346, 364
BsmFI GGGAC 2 cut(s) 113, 461
BsnI GGCC 6 cut(s) 11, 35, 90, 162, 188, 243
Bso31I GGTCTC 1 cut(s) 102
Bsp1286I GDGCHC 1 cut(s) 275
Bsp143I GATC 2 cut(s) 255, 405
BspACI CCGC 9 cut(s) 18, 144, 147, 259, 288, 304, 325, 429, 450
BspANI GGCC 6 cut(s) 11, 35, 90, 162, 188, 243
BspFNI CGCG 2 cut(s) 306, 327
BspLI GGNNCC 7 cut(s) 16, 101, 102, 163, 257, 272, 355
BspPI GGATC 2 cut(s) 250, 263
BspTNI GGTCTC 1 cut(s) 102
BssECI CCNNGG 6 cut(s) 6, 157, 174, 238, 387, 480
BssMI GATC 2 cut(s) 255, 405
BssSI CACGAG 1 cut(s) 182
BssT1I CCWWGG 1 cut(s) 387
Bst2BI CACGAG 1 cut(s) 182
Bst4CI ACNGT 2 cut(s) 55, 508
Bst6I CTCTTC 2 cut(s) 71, 224
BstC8I GCNNGC 4 cut(s) 151, 304, 384, 427
BstDSI CCRYGG 1 cut(s) 480
BstENI CCTNNNNNAGG 1 cut(s) 248
BstF5I GGATG 2 cut(s) 21, 339
BstFNI CGCG 2 cut(s) 306, 327
BstH2I RGCGCY 1 cut(s) 488
BstHHI GCGC 2 cut(s) 329, 487
BstKTI GATC 2 cut(s) 258, 408
BstMAI GTCTC 3 cut(s) 102, 346, 364
BstMBI GATC 2 cut(s) 255, 405
BstMCI CGRYCG 1 cut(s) 12
BstMWI GCNNNNNNNGC 3 cut(s) 17, 159, 312
BstSCI CCNGG 3 cut(s) 157, 266, 329
BstUI CGCG 2 cut(s) 306, 327
BstV1I GCAGC 1 cut(s) 353
BstV2I GAAGAC 3 cut(s) 73, 144, 364
BstX2I RGATCY 1 cut(s) 255
BstYI RGATCY 1 cut(s) 255
BstZI CGGCCG 1 cut(s) 9
BsuRI GGCC 6 cut(s) 11, 35, 90, 162, 188, 243
BtgI CCRYGG 1 cut(s) 480
BtrI CACGTC 1 cut(s) 196
BtsCI GGATG 2 cut(s) 21, 339
BtsIMutI CAGTG 1 cut(s) 504
Cac8I GCNNGC 4 cut(s) 151, 304, 384, 427
CfoI GCGC 2 cut(s) 329, 487
Cfr13I GGNCC 4 cut(s) 34, 100, 161, 178
CseI GACGC 2 cut(s) 295, 358
CviAII CATG 3 cut(s) 28, 96, 379
DpnI GATC 2 cut(s) 257, 407
DpnII GATC 2 cut(s) 255, 405
DrdI GACNNNNNNGTC 1 cut(s) 47
DseDI GACNNNNNNGTC 1 cut(s) 47
EaeI YGGCCR 1 cut(s) 9
EagI CGGCCG 1 cut(s) 9
Eam1104I CTCTTC 2 cut(s) 71, 224
EarI CTCTTC 2 cut(s) 71, 224
EciI GGCGGA 2 cut(s) 133, 248
EclXI CGGCCG 1 cut(s) 9
Eco130I CCWWGG 1 cut(s) 387
Eco24I GRGCYC 1 cut(s) 275
Eco31I GGTCTC 1 cut(s) 102
Eco47I GGWCC 2 cut(s) 100, 178
Eco52I CGGCCG 1 cut(s) 9
EcoNI CCTNNNNNAGG 1 cut(s) 248
EcoO109I RGGNCCY 2 cut(s) 100, 178
EcoT14I CCWWGG 1 cut(s) 387
EcoT38I GRGCYC 1 cut(s) 275
ErhI CCWWGG 1 cut(s) 387
Esp3I CGTCTC 2 cut(s) 346, 364
FaeI CATG 3 cut(s) 31, 99, 382
FaiI YATR 5 cut(s) 29, 97, 380, 498, 516
FaqI GGGAC 2 cut(s) 113, 461
FatI CATG 3 cut(s) 27, 95, 378
FauI CCCGC 3 cut(s) 295, 311, 422
FblI GTMKAC 1 cut(s) 198
Fnu4HI GCNGC 3 cut(s) 147, 367, 450
FokI GGATG 2 cut(s) 8, 346
FriOI GRGCYC 1 cut(s) 275
Fsp4HI GCNGC 3 cut(s) 147, 367, 450
GlaI GCGC 2 cut(s) 328, 486
GluI GCNGC 3 cut(s) 147, 367, 450
GsuI CTGGAG 1 cut(s) 208
HaeII RGCGCY 1 cut(s) 488
HaeIII GGCC 6 cut(s) 11, 35, 90, 162, 188, 243
HapII CCGG 6 cut(s) 12, 159, 268, 330, 345, 363
HgaI GACGC 2 cut(s) 295, 358
HhaI GCGC 2 cut(s) 329, 487
Hin1II CATG 3 cut(s) 31, 99, 382
Hin6I GCGC 2 cut(s) 327, 485
HinP1I GCGC 2 cut(s) 327, 485
HincII GTYRAC 2 cut(s) 310, 394
HindII GTYRAC 2 cut(s) 310, 394
HinfI GANTC 2 cut(s) 140, 295
HpaII CCGG 6 cut(s) 12, 159, 268, 330, 345, 363
HphI GGTGA 3 cut(s) 43, 61, 256
Hpy166II GTNNAC 4 cut(s) 58, 199, 310, 394
Hpy188III TCNNGA 1 cut(s) 403
Hpy8I GTNNAC 4 cut(s) 58, 199, 310, 394
Hpy99I CGWCG 3 cut(s) 173, 236, 401
HpyAV CCTTC 3 cut(s) 199, 214, 223
HpyCH4III ACNGT 2 cut(s) 55, 508
HpyCH4IV ACGT 2 cut(s) 195, 396
HpyCH4V TGCA 1 cut(s) 153
HpyF10VI GCNNNNNNNGC 3 cut(s) 17, 159, 312
HpySE526I ACGT 2 cut(s) 195, 396
Hsp92II CATG 3 cut(s) 31, 99, 382
HspAI GCGC 2 cut(s) 327, 485
KflI GGGWCCC 1 cut(s) 100
Kzo9I GATC 2 cut(s) 255, 405
LmnI GCTCC 5 cut(s) 270, 320, 359, 432, 492
Lsp1109I GCAGC 1 cut(s) 353
LweI GCATC 2 cut(s) 54, 324
MaeII ACGT 2 cut(s) 195, 396
MaeIII GTNAC 2 cut(s) 49, 502
MalI GATC 2 cut(s) 257, 407
MboI GATC 2 cut(s) 255, 405
MboII GAAGA 6 cut(s) 58, 73, 149, 211, 364, 463
MflI RGATCY 1 cut(s) 255
MhlI GDGCHC 1 cut(s) 275
MlyI GAGTC 1 cut(s) 134
MmeI TCCRAC 1 cut(s) 141
MslI CAYNNNNRTG 1 cut(s) 26
MspI CCGG 6 cut(s) 12, 159, 268, 330, 345, 363
MspR9I CCNGG 3 cut(s) 159, 268, 331
MvnI CGCG 2 cut(s) 306, 327
MwoI GCNNNNNNNGC 3 cut(s) 17, 159, 312
NciI CCSGG 3 cut(s) 159, 268, 331
NdeII GATC 2 cut(s) 255, 405
NlaIII CATG 3 cut(s) 31, 99, 382
NlaIV GGNNCC 7 cut(s) 16, 101, 102, 163, 257, 272, 355
NmeAIII GCCGAG 4 cut(s) 199, 219, 316, 393
NmuCI GTSAC 2 cut(s) 49, 502
PcsI WCGNNNNNNNCGW 1 cut(s) 471
PfeI GAWTC 1 cut(s) 295
PkrI GCNGC 3 cut(s) 148, 368, 451
PleI GAGTC 1 cut(s) 134
PpsI GAGTC 1 cut(s) 134
PpuMI RGGWCCY 2 cut(s) 100, 178
Psp5II RGGWCCY 2 cut(s) 100, 178
PspN4I GGNNCC 7 cut(s) 16, 101, 102, 163, 257, 272, 355
PspPI GGNCC 4 cut(s) 34, 100, 161, 178
PspPPI RGGWCCY 2 cut(s) 100, 178
PsuI RGATCY 1 cut(s) 255
RseI CAYNNNNRTG 1 cut(s) 26
SatI GCNGC 3 cut(s) 147, 367, 450
Sau3AI GATC 2 cut(s) 255, 405
Sau96I GGNCC 4 cut(s) 34, 100, 161, 178
SchI GAGTC 1 cut(s) 134
ScrFI CCNGG 3 cut(s) 159, 268, 331
SduI GDGCHC 1 cut(s) 275
SetI ASST 6 cut(s) 183, 198, 317, 399, 414, 437
SfaNI GCATC 2 cut(s) 54, 324
SinI GGWCC 2 cut(s) 100, 178
SmiMI CAYNNNNRTG 1 cut(s) 26
SmlI CTYRAG 1 cut(s) 245
SmoI CTYRAG 1 cut(s) 245
SsiI CCGC 9 cut(s) 18, 144, 147, 259, 288, 304, 325, 429, 450
StyD4I CCNGG 3 cut(s) 157, 266, 329
StyI CCWWGG 1 cut(s) 387
TaaI ACNGT 2 cut(s) 55, 508
TaiI ACGT 2 cut(s) 198, 399
TaqI TCGA 2 cut(s) 129, 526
TauI GCSGC 2 cut(s) 149, 452
TfiI GAWTC 1 cut(s) 295
TscAI CASTG 1 cut(s) 511
TseFI GTSAC 2 cut(s) 49, 502
TseI GCWGC 1 cut(s) 366
Tsp45I GTSAC 2 cut(s) 49, 502
TspDTI ATGAA 1 cut(s) 73
TspGWI ACGGA 2 cut(s) 157, 346
TspRI CASTG 1 cut(s) 511
VpaK11BI GGWCC 2 cut(s) 100, 178
XagI CCTNNNNNAGG 1 cut(s) 248
XmiI GTMKAC 1 cut(s) 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.