Prupe.6G067200_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0007099
Physical Location & Seq
Forward (+)
4641397 .. 4641963
567 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G067200.1

Sequence Viewer

Length: 567 bp
ATGTCCGACGTCTCACGCCGTCTAACAACCACGACGCGCATACACATAATGGCCTTAGACGGCATCGTTAACGTCAACTCACTCTTCTCCTTCGCGATCTTCGTCGGCCTCAATTGGTACCCCACCACCGACCCCGCCGCCATGCTCATCGGCTCCGACAAGGCTTGCGCCGCCCGGGCCGACTCGGCCGAGGGTCTCATTGCTTTCCACGTGTACTCCTTCAGCTCCTTCCTCTTCTCCAGCCTAGTCGCCCTCGCTCTCAAGCAAGCCATCAAGATCAGCCGAGCCGCCGGCCACGACGGCGGCTACGGGTACCACGTCCGTGGCACCAACATGGGTAATTTGAACAGGGTCGCTTTGCGGGTCGGGACGTTGGTTTCGGCTTTCGGGTCGGTTTTTGGATGTGGGTTTTTGATGATGGCTCTGGTGGACTTGGTTCAGATCAAATTGGGGAGGTTGGGTTGTGGGAGTTTCTACACTTTGGCTGCAATTGGTCCTCTGGTGACTTTGGTTCCTCTGGCCCTCGTCATCTATGTGTTTCTTGTGCTACACGCTTTTACTCGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

189

Amino Acids

20.08

Weight (kDa)

9.55

Isoelectric Point (pI)

23.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 12
Acc65I GGTACC 2 cut(s) 117, 312
AccB1I GGYRCC 3 cut(s) 117, 312, 326
AccII CGCG 2 cut(s) 37, 95
AciI CCGC 6 cut(s) 135, 138, 171, 288, 303, 361
AcoI YGGCCR 2 cut(s) 186, 292
AcuI CTGAAG 1 cut(s) 205
AcvI CACGTG 1 cut(s) 211
AcyI GRCGYC 1 cut(s) 9
AfaI GTAC 3 cut(s) 119, 215, 314
AflIII ACRYGT 1 cut(s) 210
AgsI TTSAA 1 cut(s) 346
AjiI CACGTC 1 cut(s) 319
AleI CACNNNNGTG 1 cut(s) 321
AluBI AGCT 1 cut(s) 225
AluI AGCT 1 cut(s) 225
Alw26I GTCTC 2 cut(s) 16, 200
Ama87I CYCGRG 1 cut(s) 174
AoxI GGCC 6 cut(s) 51, 106, 177, 186, 292, 519
ApeKI GCWGC 1 cut(s) 485
ArsI GACNNNNNNTTYG 2 cut(s) 361, 393
Asp718I GGTACC 2 cut(s) 117, 312
AspLEI GCGC 2 cut(s) 39, 170
AspS9I GGNCC 3 cut(s) 177, 494, 520
AsuC2I CCSGG 2 cut(s) 175, 176
AsuHPI GGTGA 1 cut(s) 514
AvaI CYCGRG 1 cut(s) 174
AvaII GGWCC 1 cut(s) 494
BanI GGYRCC 3 cut(s) 117, 312, 326
BbrPI CACGTG 1 cut(s) 211
BbvI GCAGC 1 cut(s) 472
BccI CCATC 2 cut(s) 278, 412
BceAI ACGGC 3 cut(s) 3, 76, 316
BcnI CCSGG 2 cut(s) 175, 176
BcoDI GTCTC 2 cut(s) 16, 200
BfaI CTAG 1 cut(s) 245
BglI GCCNNNNNGGC 3 cut(s) 176, 185, 300
BisI GCNGC 5 cut(s) 138, 171, 288, 304, 486
BlsI GCNGC 5 cut(s) 139, 172, 289, 305, 487
Bme1390I CCNGG 2 cut(s) 175, 176
Bme18I GGWCC 1 cut(s) 494
BmeT110I CYCGRG 1 cut(s) 174
BmgBI CACGTC 1 cut(s) 319
BmgT120I GGNCC 3 cut(s) 177, 494, 520
BmiI GGNNCC 5 cut(s) 119, 154, 314, 328, 513
BmrFI CCNGG 2 cut(s) 175, 176
BmsI GCATC 1 cut(s) 72
BpmI CTGGAG 1 cut(s) 223
BpuEI CTTGAG 1 cut(s) 245
BpuMI CCSGG 2 cut(s) 175, 176
BsaAI YACGTR 1 cut(s) 211
BsaHI GRCGYC 1 cut(s) 9
BsaI GGTCTC 1 cut(s) 200
BsaJI CCNNGG 3 cut(s) 174, 189, 322
BsaXI ACNNNNNCTCC 4 cut(s) 200, 230, 445, 475
Bse118I RCCGGY 1 cut(s) 290
Bse3DI GCAATG 1 cut(s) 198
BseDI CCNNGG 3 cut(s) 174, 189, 322
BseGI GGATG 1 cut(s) 407
BseMI GCAATG 1 cut(s) 198
BseX3I CGGCCG 1 cut(s) 186
BseXI GCAGC 1 cut(s) 472
Bsh1236I CGCG 2 cut(s) 37, 95
Bsh1285I CGRYCG 1 cut(s) 189
BshFI GGCC 6 cut(s) 53, 108, 179, 188, 294, 521
BshNI GGYRCC 3 cut(s) 117, 312, 326
BsiEI CGRYCG 1 cut(s) 189
BsiHKCI CYCGRG 1 cut(s) 174
BsiSI CCGG 2 cut(s) 175, 291
BslFI GGGAC 1 cut(s) 382
BsmAI GTCTC 2 cut(s) 16, 200
BsmBI CGTCTC 1 cut(s) 16
BsmFI GGGAC 1 cut(s) 382
BsnI GGCC 6 cut(s) 53, 108, 179, 188, 294, 521
Bso31I GGTCTC 1 cut(s) 200
BsoBI CYCGRG 1 cut(s) 174
Bsp143I GATC 3 cut(s) 96, 276, 441
Bsp68I TCGCGA 1 cut(s) 95
BspACI CCGC 6 cut(s) 135, 138, 171, 288, 303, 361
BspANI GGCC 6 cut(s) 53, 108, 179, 188, 294, 521
BspFNI CGCG 2 cut(s) 37, 95
BspLI GGNNCC 5 cut(s) 119, 154, 314, 328, 513
BspT107I GGYRCC 3 cut(s) 117, 312, 326
BspTNI GGTCTC 1 cut(s) 200
BsrDI GCAATG 1 cut(s) 198
BsrFI RCCGGY 1 cut(s) 290
BssAI RCCGGY 1 cut(s) 290
BssECI CCNNGG 3 cut(s) 174, 189, 322
BssMI GATC 3 cut(s) 96, 276, 441
BssNI GRCGYC 1 cut(s) 9
Bst6I CTCTTC 2 cut(s) 89, 239
BstACI GRCGYC 1 cut(s) 9
BstBAI YACGTR 1 cut(s) 211
BstC8I GCNNGC 3 cut(s) 166, 267, 292
BstDEI CTNAG 1 cut(s) 55
BstDSI CCRYGG 1 cut(s) 322
BstF5I GGATG 1 cut(s) 407
BstFNI CGCG 2 cut(s) 37, 95
BstHHI GCGC 2 cut(s) 39, 170
BstKTI GATC 3 cut(s) 99, 279, 444
BstMAI GTCTC 2 cut(s) 16, 200
BstMBI GATC 3 cut(s) 96, 276, 441
BstMCI CGRYCG 1 cut(s) 189
BstMWI GCNNNNNNNGC 4 cut(s) 170, 176, 185, 300
BstSCI CCNGG 2 cut(s) 173, 174
BstUI CGCG 2 cut(s) 37, 95
BstV1I GCAGC 1 cut(s) 472
BstXI CCANNNNNNTGG 1 cut(s) 323
BstZI CGGCCG 1 cut(s) 186
BsuRI GGCC 6 cut(s) 53, 108, 179, 188, 294, 521
BtgI CCRYGG 1 cut(s) 322
BtrI CACGTC 1 cut(s) 319
BtsCI GGATG 1 cut(s) 407
BtuMI TCGCGA 1 cut(s) 95
Cac8I GCNNGC 3 cut(s) 166, 267, 292
CfoI GCGC 2 cut(s) 39, 170
Cfr10I RCCGGY 1 cut(s) 290
Cfr13I GGNCC 3 cut(s) 177, 494, 520
Cfr9I CCCGGG 1 cut(s) 174
CseI GACGC 1 cut(s) 43
Csp6I GTAC 3 cut(s) 118, 214, 313
CviAII CATG 2 cut(s) 142, 334
CviQI GTAC 3 cut(s) 118, 214, 313
DdeI CTNAG 1 cut(s) 55
DpnI GATC 3 cut(s) 98, 278, 443
DpnII GATC 3 cut(s) 96, 276, 441
EaeI YGGCCR 2 cut(s) 186, 292
EagI CGGCCG 1 cut(s) 186
Eam1104I CTCTTC 2 cut(s) 89, 239
EarI CTCTTC 2 cut(s) 89, 239
EclXI CGGCCG 1 cut(s) 186
Eco31I GGTCTC 1 cut(s) 200
Eco47I GGWCC 1 cut(s) 494
Eco52I CGGCCG 1 cut(s) 186
Eco57I CTGAAG 1 cut(s) 205
Eco72I CACGTG 1 cut(s) 211
Eco88I CYCGRG 1 cut(s) 174
Esp3I CGTCTC 1 cut(s) 16
FaeI CATG 2 cut(s) 145, 337
FaiI YATR 5 cut(s) 41, 47, 143, 335, 534
FaqI GGGAC 1 cut(s) 382
FatI CATG 2 cut(s) 141, 333
FauI CCCGC 2 cut(s) 142, 354
Fnu4HI GCNGC 5 cut(s) 138, 171, 288, 304, 486
FokI GGATG 1 cut(s) 414
Fsp4HI GCNGC 5 cut(s) 138, 171, 288, 304, 486
FspBI CTAG 1 cut(s) 245
GlaI GCGC 2 cut(s) 38, 169
GluI GCNGC 5 cut(s) 138, 171, 288, 304, 486
GsuI CTGGAG 1 cut(s) 223
HaeIII GGCC 6 cut(s) 53, 108, 179, 188, 294, 521
HapII CCGG 2 cut(s) 175, 291
HgaI GACGC 1 cut(s) 43
HhaI GCGC 2 cut(s) 39, 170
Hin1I GRCGYC 1 cut(s) 9
Hin1II CATG 2 cut(s) 145, 337
Hin6I GCGC 2 cut(s) 37, 168
HinP1I GCGC 2 cut(s) 37, 168
HincII GTYRAC 2 cut(s) 70, 76
HindII GTYRAC 2 cut(s) 70, 76
HinfI GANTC 1 cut(s) 182
HpaI GTTAAC 1 cut(s) 70
HpaII CCGG 2 cut(s) 175, 291
HphI GGTGA 1 cut(s) 514
Hpy166II GTNNAC 4 cut(s) 70, 76, 214, 430
Hpy188I TCNGA 3 cut(s) 7, 157, 441
Hpy188III TCNNGA 3 cut(s) 94, 274, 367
Hpy8I GTNNAC 4 cut(s) 70, 76, 214, 430
Hpy99I CGWCG 4 cut(s) 11, 37, 107, 302
HpyAV CCTTC 3 cut(s) 100, 229, 238
HpyCH4IV ACGT 5 cut(s) 9, 72, 210, 318, 371
HpyCH4V TGCA 1 cut(s) 488
HpyF10VI GCNNNNNNNGC 4 cut(s) 170, 176, 185, 300
HpyF3I CTNAG 1 cut(s) 55
HpySE526I ACGT 5 cut(s) 9, 72, 210, 318, 371
Hsp92I GRCGYC 1 cut(s) 9
Hsp92II CATG 2 cut(s) 145, 337
HspAI GCGC 2 cut(s) 37, 168
KpnI GGTACC 2 cut(s) 121, 316
KroI GCCGGC 1 cut(s) 290
KroNI GCCGGC 1 cut(s) 292
KspAI GTTAAC 1 cut(s) 70
Kzo9I GATC 3 cut(s) 96, 276, 441
LmnI GCTCC 2 cut(s) 158, 230
LpnPI CCDG 7 cut(s) 188, 253, 304, 334, 410, 485, 503
Lsp1109I GCAGC 1 cut(s) 472
LweI GCATC 1 cut(s) 72
MaeI CTAG 1 cut(s) 245
MaeII ACGT 5 cut(s) 9, 72, 210, 318, 371
MaeIII GTNAC 1 cut(s) 502
MalI GATC 3 cut(s) 98, 278, 443
MboI GATC 3 cut(s) 96, 276, 441
MboII GAAGA 3 cut(s) 76, 91, 226
MfeI CAATTG 2 cut(s) 112, 489
MluCI AATT 4 cut(s) 112, 340, 446, 489
MlyI GAGTC 1 cut(s) 176
MmeI TCCRAC 2 cut(s) 30, 180
MnlI CCTC 8 cut(s) 119, 184, 242, 263, 447, 507, 525, 533
MroNI GCCGGC 1 cut(s) 290
MseI TTAA 1 cut(s) 69
MslI CAYNNNNRTG 3 cut(s) 321, 332, 533
MspI CCGG 2 cut(s) 175, 291
MspR9I CCNGG 2 cut(s) 175, 176
MunI CAATTG 2 cut(s) 112, 489
MvnI CGCG 2 cut(s) 37, 95
MwoI GCNNNNNNNGC 4 cut(s) 170, 176, 185, 300
NaeI GCCGGC 1 cut(s) 292
NciI CCSGG 2 cut(s) 175, 176
NdeII GATC 3 cut(s) 96, 276, 441
NgoMIV GCCGGC 1 cut(s) 290
NlaIII CATG 2 cut(s) 145, 337
NlaIV GGNNCC 5 cut(s) 119, 154, 314, 328, 513
NmeAIII GCCGAG 3 cut(s) 164, 214, 308
NmuCI GTSAC 1 cut(s) 502
NruI TCGCGA 1 cut(s) 95
OliI CACNNNNGTG 1 cut(s) 321
PcsI WCGNNNNNNNCGW 2 cut(s) 99, 315
PdiI GCCGGC 1 cut(s) 292
PkrI GCNGC 5 cut(s) 139, 172, 289, 305, 487
PleI GAGTC 1 cut(s) 176
PmaCI CACGTG 1 cut(s) 211
PmlI CACGTG 1 cut(s) 211
PpsI GAGTC 1 cut(s) 176
Ppu21I YACGTR 1 cut(s) 211
PspCI CACGTG 1 cut(s) 211
PspN4I GGNNCC 5 cut(s) 119, 154, 314, 328, 513
PspPI GGNCC 3 cut(s) 177, 494, 520
RruI TCGCGA 1 cut(s) 95
RsaI GTAC 3 cut(s) 119, 215, 314
RsaNI GTAC 3 cut(s) 118, 214, 313
RseI CAYNNNNRTG 3 cut(s) 321, 332, 533
SaqAI TTAA 1 cut(s) 69
SatI GCNGC 5 cut(s) 138, 171, 288, 304, 486
Sau3AI GATC 3 cut(s) 96, 276, 441
Sau96I GGNCC 3 cut(s) 177, 494, 520
SchI GAGTC 1 cut(s) 176
ScrFI CCNGG 2 cut(s) 175, 176
SetI ASST 7 cut(s) 12, 75, 213, 227, 321, 374, 458
SfaNI GCATC 1 cut(s) 72
SfiI GGCCNNNNNGGCC 1 cut(s) 185
SinI GGWCC 1 cut(s) 494
SmaI CCCGGG 1 cut(s) 176
SmiMI CAYNNNNRTG 3 cut(s) 321, 332, 533
SmlI CTYRAG 1 cut(s) 260
SmoI CTYRAG 1 cut(s) 260
SrfI GCCCGGGC 1 cut(s) 176
Sse9I AATT 4 cut(s) 112, 340, 446, 489
SsiI CCGC 6 cut(s) 135, 138, 171, 288, 303, 361
SspMI CTAG 1 cut(s) 245
StyD4I CCNGG 2 cut(s) 173, 174
TaiI ACGT 5 cut(s) 12, 75, 213, 321, 374
TaqI TCGA 1 cut(s) 562
TasI AATT 4 cut(s) 112, 340, 446, 489
TatI WGTACW 1 cut(s) 213
TauI GCSGC 4 cut(s) 140, 173, 290, 306
Tru1I TTAA 1 cut(s) 69
Tru9I TTAA 1 cut(s) 69
TseFI GTSAC 1 cut(s) 502
TseI GCWGC 1 cut(s) 485
Tsp45I GTSAC 1 cut(s) 502
TspGWI ACGGA 1 cut(s) 311
TspMI CCCGGG 1 cut(s) 174
VpaK11BI GGWCC 1 cut(s) 494
XmaI CCCGGG 1 cut(s) 174
XspI CTAG 1 cut(s) 245
ZraI GACGTC 1 cut(s) 10
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.