Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0007099

Physical Location & Seq

Genomic Coordinates Reverse (-)

31864939 .. 31865469

Gene Structure 531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g37210.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGCCCTAGACGGCATAGTCAATGTGAACTCACTTTTCTCAATTGCCCTCTTCATAGGCCTCACTTGGTACCCTACCACCGACCTCAACTCCATGCTACTAGGCTCCAACAAAGCTTGTGCTGCCGGTACCGATGCGGCGGAGGGACTCATCTCCTTCCACGTCTACTCCTTCAGCTCCTTCCTCTTCTCCAGCCTCATTGCCTTGGCTCTCAAGCAAGCCATCAAGATCAGCCAAATAAGTTGTTGTAGCAGTATTGGAAATGGTGGCTCGGATTCTGAGTTGCTTGTTGCCAACATGGGACATGTTAACCAGGTGGGTTTGCGGGTCGGTACGCTGGTCTCGGCATTCGGGTCGGTTTTAGGATGTGGTTTCTTGATGATGGCCTTGGTGGACTTGGTTCAGATCAAATTGGGGAGGTTGAGTTGTGGGGATTTGTATACTTTTGCTGCAATTGGTCCTTTGGTGACTTTGGTCCCTTTGGCTCTTGTGATCTATGTTTTTCTTGTACTTCATGCCTTTACTCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_trans_1_4 Glyco_transf_4 Glycos_transf_1

Protein Analysis

177

Amino Acids

18.46

Weight (kDa)

6.23

Isoelectric Point (pI)

20.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007099)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05950
fragaria_vesca	FvH4_3g37210 FvH4_7g23601
malus_domestica	MD01G1141800.v1.1 MD11G1091000.v1.1
prunus_persica	Prupe.2G242900_v2.0.a1 Prupe.6G067200_v2.0.a1
pyrus_communis	pycom01g16210 pycom11g07570
rosa_chinensis	RchiOBHm_Chr1g0368851 RchiOBHm_Chr5g0066951
rosa_laevigata	RLG00000027182 RLG00000027184 RLG00000027186 RLG00000035896
rosa_multiflora	Rmu_sc0008378.1_g000006 Rmu_sc0012799.1_g000008 Rmu_sc0030248.1_g000001
rosa_roxburghii	Rroxscaffold_1G00014170
rosa_rugosa	Rorug01G0345300 Rorug05G0380000
rosa_samantha	Rh1AG352400 Rh5BG456700 Rh5CG478800
rosa_wichuraiana	Rw5G041120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	17
Acc65I	GGTACC	2 cut(s)	69, 128
AccB1I	GGYRCC	2 cut(s)	69, 128
AccI	GTMKAC	2 cut(s)	165, 440
AciI	CCGC	3 cut(s)	137, 140, 325
AcuI	CTGAAG	1 cut(s)	157
AfaI	GTAC	4 cut(s)	71, 130, 334, 510
AflIII	ACRYGT	1 cut(s)	304
AjiI	CACGTC	1 cut(s)	163
AjnI	CCWGG	1 cut(s)	312
AluBI	AGCT	2 cut(s)	116, 177
AluI	AGCT	2 cut(s)	116, 177
Alw26I	GTCTC	1 cut(s)	346
AoxI	GGCC	3 cut(s)	3, 58, 384
ApeKI	GCWGC	2 cut(s)	122, 449
Asp718I	GGTACC	2 cut(s)	69, 128
AspS9I	GGNCC	3 cut(s)	4, 458, 475
AsuHPI	GGTGA	1 cut(s)	478
AvaII	GGWCC	2 cut(s)	458, 475
BaeI	ACNNNNGTAYC	2 cut(s)	324, 357
BanI	GGYRCC	2 cut(s)	69, 128
BbvI	GCAGC	2 cut(s)	109, 436
BccI	CCATC	2 cut(s)	230, 376
BceAI	ACGGC	1 cut(s)	28
BcgI	CGANNNNNNTGC	2 cut(s)	336, 370
BciT130I	CCWGG	1 cut(s)	314
BcoDI	GTCTC	1 cut(s)	346
BfaI	CTAG	2 cut(s)	8, 101
BisI	GCNGC	3 cut(s)	123, 138, 450
BlsI	GCNGC	3 cut(s)	124, 139, 451
Bme1390I	CCNGG	1 cut(s)	314
Bme18I	GGWCC	2 cut(s)	458, 475
BmgBI	CACGTC	1 cut(s)	163
BmgT120I	GGNCC	3 cut(s)	4, 458, 475
BmiI	GGNNCC	4 cut(s)	71, 106, 130, 477
BmrFI	CCNGG	1 cut(s)	314
BmsI	GCATC	1 cut(s)	124
BoxI	GACNNNNGTC	1 cut(s)	473
BpmI	CTGGAG	1 cut(s)	175
BpuEI	CTTGAG	1 cut(s)	197
BsaI	GGTCTC	1 cut(s)	346
BsaJI	CCNNGG	2 cut(s)	204, 387
BsaXI	ACNNNNNCTCC	6 cut(s)	74, 104, 152, 182, 409, 439
Bse118I	RCCGGY	1 cut(s)	125
Bse3DI	GCAATG	1 cut(s)	198
BseBI	CCWGG	1 cut(s)	314
BseDI	CCNNGG	2 cut(s)	204, 387
BseGI	GGATG	1 cut(s)	371
BseMI	GCAATG	1 cut(s)	198
BseMII	CTCAG	1 cut(s)	270
BseXI	GCAGC	2 cut(s)	109, 436
BshFI	GGCC	3 cut(s)	5, 60, 386
BshNI	GGYRCC	2 cut(s)	69, 128
BsiSI	CCGG	1 cut(s)	126
BslFI	GGGAC	3 cut(s)	159, 315, 461
BsmAI	GTCTC	1 cut(s)	346
BsmFI	GGGAC	3 cut(s)	159, 315, 461
BsmI	GAATGC	1 cut(s)	347
BsnI	GGCC	3 cut(s)	5, 60, 386
Bso31I	GGTCTC	1 cut(s)	346
Bsp143I	GATC	3 cut(s)	228, 405, 492
BspACI	CCGC	3 cut(s)	137, 140, 325
BspANI	GGCC	3 cut(s)	5, 60, 386
BspCNI	CTCAG	1 cut(s)	271
BspLI	GGNNCC	4 cut(s)	71, 106, 130, 477
BspT107I	GGYRCC	2 cut(s)	69, 128
BspTNI	GGTCTC	1 cut(s)	346
BsrDI	GCAATG	1 cut(s)	198
BsrFI	RCCGGY	1 cut(s)	125
BssAI	RCCGGY	1 cut(s)	125
BssECI	CCNNGG	2 cut(s)	204, 387
BssMI	GATC	3 cut(s)	228, 405, 492
BssNAI	GTATAC	1 cut(s)	441
BssT1I	CCWWGG	2 cut(s)	204, 387
Bst1107I	GTATAC	1 cut(s)	441
Bst2UI	CCWGG	1 cut(s)	314
Bst6I	CTCTTC	2 cut(s)	56, 191
BstC8I	GCNNGC	1 cut(s)	219
BstDEI	CTNAG	1 cut(s)	279
BstF5I	GGATG	1 cut(s)	371
BstKTI	GATC	3 cut(s)	231, 408, 495
BstMAI	GTCTC	1 cut(s)	346
BstMBI	GATC	3 cut(s)	228, 405, 492
BstMWI	GCNNNNNNNGC	1 cut(s)	122
BstNI	CCWGG	1 cut(s)	314
BstNSI	RCATGY	1 cut(s)	308
BstPAI	GACNNNNGTC	1 cut(s)	473
BstSCI	CCNGG	1 cut(s)	312
BstV1I	GCAGC	2 cut(s)	109, 436
BstZ17I	GTATAC	1 cut(s)	441
BsuRI	GGCC	3 cut(s)	5, 60, 386
BtrI	CACGTC	1 cut(s)	163
BtsCI	GGATG	1 cut(s)	371
Cac8I	GCNNGC	1 cut(s)	219
Cfr10I	RCCGGY	1 cut(s)	125
Cfr13I	GGNCC	3 cut(s)	4, 458, 475
CsiI	ACCWGGT	1 cut(s)	312
Csp6I	GTAC	4 cut(s)	70, 129, 333, 509
CviAII	CATG	4 cut(s)	94, 298, 305, 515
CviQI	GTAC	4 cut(s)	70, 129, 333, 509
DdeI	CTNAG	1 cut(s)	279
DpnI	GATC	3 cut(s)	230, 407, 494
DpnII	GATC	3 cut(s)	228, 405, 492
DrdI	GACNNNNNNGTC	1 cut(s)	17
DseDI	GACNNNNNNGTC	1 cut(s)	17
Eam1104I	CTCTTC	2 cut(s)	56, 191
EarI	CTCTTC	2 cut(s)	56, 191
EciI	GGCGGA	1 cut(s)	155
Eco130I	CCWWGG	2 cut(s)	204, 387
Eco147I	AGGCCT	1 cut(s)	60
Eco31I	GGTCTC	1 cut(s)	346
Eco47I	GGWCC	2 cut(s)	458, 475
Eco57I	CTGAAG	1 cut(s)	157
EcoRII	CCWGG	1 cut(s)	312
EcoT14I	CCWWGG	2 cut(s)	204, 387
ErhI	CCWWGG	2 cut(s)	204, 387
FaeI	CATG	4 cut(s)	97, 301, 308, 518
FaiI	YATR	8 cut(s)	17, 56, 95, 299, 306, 441, 498, 516
FaqI	GGGAC	3 cut(s)	159, 315, 461
FatI	CATG	4 cut(s)	93, 297, 304, 514
FauI	CCCGC	1 cut(s)	318
FblI	GTMKAC	2 cut(s)	165, 440
Fnu4HI	GCNGC	3 cut(s)	123, 138, 450
FokI	GGATG	1 cut(s)	378
Fsp4HI	GCNGC	3 cut(s)	123, 138, 450
FspBI	CTAG	2 cut(s)	8, 101
GluI	GCNGC	3 cut(s)	123, 138, 450
GsuI	CTGGAG	1 cut(s)	175
HaeIII	GGCC	3 cut(s)	5, 60, 386
HapII	CCGG	1 cut(s)	126
Hin1II	CATG	4 cut(s)	97, 301, 308, 518
HincII	GTYRAC	1 cut(s)	310
HindII	GTYRAC	1 cut(s)	310
HindIII	AAGCTT	1 cut(s)	114
HinfI	GANTC	2 cut(s)	147, 275
HpaI	GTTAAC	1 cut(s)	310
HpaII	CCGG	1 cut(s)	126
HphI	GGTGA	1 cut(s)	478
Hpy166II	GTNNAC	5 cut(s)	28, 166, 310, 394, 441
Hpy188I	TCNGA	3 cut(s)	274, 280, 405
Hpy188III	TCNNGA	2 cut(s)	226, 376
Hpy8I	GTNNAC	5 cut(s)	28, 166, 310, 394, 441
HpyAV	CCTTC	3 cut(s)	166, 181, 190
HpyCH4IV	ACGT	1 cut(s)	162
HpyCH4V	TGCA	1 cut(s)	452
HpyF10VI	GCNNNNNNNGC	1 cut(s)	122
HpyF3I	CTNAG	1 cut(s)	279
HpySE526I	ACGT	1 cut(s)	162
Hsp92II	CATG	4 cut(s)	97, 301, 308, 518
KpnI	GGTACC	2 cut(s)	73, 132
KspAI	GTTAAC	1 cut(s)	310
Kzo9I	GATC	3 cut(s)	228, 405, 492
LmnI	GCTCC	2 cut(s)	110, 182
LpnPI	CCDG	5 cut(s)	139, 205, 299, 323, 326
Lsp1109I	GCAGC	2 cut(s)	109, 436
LweI	GCATC	1 cut(s)	124
MabI	ACCWGGT	1 cut(s)	312
MaeI	CTAG	2 cut(s)	8, 101
MaeII	ACGT	1 cut(s)	162
MaeIII	GTNAC	1 cut(s)	466
MalI	GATC	3 cut(s)	230, 407, 494
MboI	GATC	3 cut(s)	228, 405, 492
MboII	GAAGA	2 cut(s)	43, 178
MfeI	CAATTG	2 cut(s)	42, 453
MluCI	AATT	3 cut(s)	42, 410, 453
MlyI	GAGTC	1 cut(s)	141
MmeI	TCCRAC	1 cut(s)	132
MnlI	CCTC	7 cut(s)	59, 71, 95, 136, 194, 206, 411
MseI	TTAA	2 cut(s)	309, 529
MspI	CCGG	1 cut(s)	126
MspR9I	CCNGG	1 cut(s)	314
MunI	CAATTG	2 cut(s)	42, 453
Mva1269I	GAATGC	1 cut(s)	347
MvaI	CCWGG	1 cut(s)	314
MwoI	GCNNNNNNNGC	1 cut(s)	122
NdeII	GATC	3 cut(s)	228, 405, 492
NlaIII	CATG	4 cut(s)	97, 301, 308, 518
NlaIV	GGNNCC	4 cut(s)	71, 106, 130, 477
NmeAIII	GCCGAG	1 cut(s)	323
NmuCI	GTSAC	1 cut(s)	466
NspI	RCATGY	1 cut(s)	308
PceI	AGGCCT	1 cut(s)	60
PciI	ACATGT	1 cut(s)	304
PctI	GAATGC	1 cut(s)	347
PfeI	GAWTC	1 cut(s)	275
PkrI	GCNGC	3 cut(s)	124, 139, 451
PleI	GAGTC	1 cut(s)	141
PpsI	GAGTC	1 cut(s)	141
PscI	ACATGT	1 cut(s)	304
PshAI	GACNNNNGTC	1 cut(s)	473
Psp6I	CCWGG	1 cut(s)	312
PspGI	CCWGG	1 cut(s)	312
PspN4I	GGNNCC	4 cut(s)	71, 106, 130, 477
PspPI	GGNCC	3 cut(s)	4, 458, 475
RsaI	GTAC	4 cut(s)	71, 130, 334, 510
RsaNI	GTAC	4 cut(s)	70, 129, 333, 509
SaqAI	TTAA	2 cut(s)	309, 529
SatI	GCNGC	3 cut(s)	123, 138, 450
Sau3AI	GATC	3 cut(s)	228, 405, 492
Sau96I	GGNCC	3 cut(s)	4, 458, 475
SchI	GAGTC	1 cut(s)	141
ScrFI	CCNGG	1 cut(s)	314
SetI	ASST	6 cut(s)	87, 118, 165, 179, 318, 422
SexAI	ACCWGGT	1 cut(s)	312
SfaNI	GCATC	1 cut(s)	124
SinI	GGWCC	2 cut(s)	458, 475
SmlI	CTYRAG	1 cut(s)	212
SmoI	CTYRAG	1 cut(s)	212
Sse9I	AATT	3 cut(s)	42, 410, 453
SseBI	AGGCCT	1 cut(s)	60
SsiI	CCGC	3 cut(s)	137, 140, 325
SspMI	CTAG	2 cut(s)	8, 101
StuI	AGGCCT	1 cut(s)	60
StyD4I	CCNGG	1 cut(s)	312
StyI	CCWWGG	2 cut(s)	204, 387
TaiI	ACGT	1 cut(s)	165
TasI	AATT	3 cut(s)	42, 410, 453
TatI	WGTACW	1 cut(s)	508
TauI	GCSGC	1 cut(s)	140
TfiI	GAWTC	1 cut(s)	275
Tru1I	TTAA	2 cut(s)	309, 529
Tru9I	TTAA	2 cut(s)	309, 529
TseFI	GTSAC	1 cut(s)	466
TseI	GCWGC	2 cut(s)	122, 449
Tsp45I	GTSAC	1 cut(s)	466
TspDTI	ATGAA	2 cut(s)	43, 503
VpaK11BI	GGWCC	2 cut(s)	458, 475
XceI	RCATGY	1 cut(s)	308
XmiI	GTMKAC	2 cut(s)	165, 440
XspI	CTAG	2 cut(s)	8, 101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.