Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0007099

Physical Location & Seq

Genomic Coordinates Reverse (-)

18371153 .. 18372009

Gene Structure 857 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g23601.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGACGGCCCTGGACGGCATCGTCACCGTGAACTCCCTCTTCACCCTGGCCGTCTTCATCGGCCTCACATGGGACCCCAGAGACCCTTCCAACACCCTCATCGAGCCACCAGACTCCGCCACGTGCACCCCCGGCCCGTCCGTCGCGCAGGACCTCGTCGCCTTCCACGTGTACTCCTTCTCCTCCTTCCTCTTCTCCAGCCTCGTCGCCCTGGGCCTGAAACAGGGGATCCGCCTCACCCGGATCCCCTCCTACCACCCCGCCGAGATTCTCGCCCGCGTCAACAGCACCCTTCTCCGCGCCGGCATGCTCGTCTCCGGCCTCGGCTCCGTCTCCGGCTGCGTCTTCCTCATGCTCGCCTTGGTCAACGTCGTCCAGATCAAGCTCGGCACTCTCGCGTGTGGCAGCGACCACACCCTCGCCGCCGTCATCCCTCTCGTCATCTTGGTCCCGGTGGCGCTTGTCATCTACGTCGTCACTGTTCTCTACGCTTTCACGCGAGGAGCAATATTGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

173

Amino Acids

18.15

Weight (kDa)

7.75

Isoelectric Point (pI)

29.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007099)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05950
fragaria_vesca	FvH4_3g37210 FvH4_7g23601
malus_domestica	MD01G1141800.v1.1 MD11G1091000.v1.1
prunus_persica	Prupe.2G242900_v2.0.a1 Prupe.6G067200_v2.0.a1
pyrus_communis	pycom01g16210 pycom11g07570
rosa_chinensis	RchiOBHm_Chr1g0368851 RchiOBHm_Chr5g0066951
rosa_laevigata	RLG00000027182 RLG00000027184 RLG00000027186 RLG00000035896
rosa_multiflora	Rmu_sc0008378.1_g000006 Rmu_sc0012799.1_g000008 Rmu_sc0030248.1_g000001
rosa_roxburghii	Rroxscaffold_1G00014170
rosa_rugosa	Rorug01G0345300 Rorug05G0380000
rosa_samantha	Rh1AG352400 Rh5BG456700 Rh5CG478800
rosa_wichuraiana	Rw5G041120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	20
AccII	CGCG	5 cut(s)	146, 279, 300, 398, 499
AciI	CCGC	6 cut(s)	117, 232, 261, 277, 298, 423
AclWI	GGATC	4 cut(s)	223, 236, 238, 251
AcoI	YGGCCR	1 cut(s)	48
AcvI	CACGTG	2 cut(s)	123, 169
AfaI	GTAC	1 cut(s)	173
AfiI	CCNNNNNNNGG	2 cut(s)	70, 223
AflIII	ACRYGT	1 cut(s)	168
AgsI	TTSAA	1 cut(s)	514
AjnI	CCWGG	3 cut(s)	9, 45, 210
AluBI	AGCT	1 cut(s)	385
AluI	AGCT	1 cut(s)	385
Alw21I	GWGCWC	1 cut(s)	128
Alw26I	GTCTC	3 cut(s)	75, 319, 337
Alw44I	GTGCAC	1 cut(s)	124
AlwI	GGATC	4 cut(s)	223, 236, 238, 251
AoxI	GGCC	6 cut(s)	6, 48, 61, 133, 214, 319
ApaLI	GTGCAC	1 cut(s)	124
ApeKI	GCWGC	2 cut(s)	339, 405
AspLEI	GCGC	3 cut(s)	148, 302, 460
AspS9I	GGNCC	6 cut(s)	7, 73, 134, 151, 214, 448
AsuC2I	CCSGG	3 cut(s)	132, 241, 452
AsuHPI	GGTGA	3 cut(s)	16, 34, 229
AvaII	GGWCC	3 cut(s)	73, 151, 448
BaeGI	GKGCMC	1 cut(s)	128
BamHI	GGATCC	2 cut(s)	228, 243
BbrPI	CACGTG	2 cut(s)	123, 169
BbsI	GAAGAC	2 cut(s)	46, 337
Bbv12I	GWGCWC	1 cut(s)	128
BbvI	GCAGC	2 cut(s)	326, 417
BceAI	ACGGC	4 cut(s)	21, 31, 35, 410
BciT130I	CCWGG	3 cut(s)	11, 47, 212
BcnI	CCSGG	3 cut(s)	132, 241, 452
BcoDI	GTCTC	3 cut(s)	75, 319, 337
BfoI	RGCGCY	1 cut(s)	461
BisI	GCNGC	3 cut(s)	340, 406, 423
BlsI	GCNGC	3 cut(s)	341, 407, 424
Bme1390I	CCNGG	6 cut(s)	11, 47, 132, 212, 241, 452
Bme18I	GGWCC	3 cut(s)	73, 151, 448
BmgT120I	GGNCC	6 cut(s)	7, 73, 134, 151, 214, 448
BmiI	GGNNCC	6 cut(s)	74, 75, 230, 245, 328, 450
BmrFI	CCNGG	6 cut(s)	11, 47, 132, 212, 241, 452
BmsI	GCATC	1 cut(s)	27
BpiI	GAAGAC	2 cut(s)	46, 337
BpmI	CTGGAG	1 cut(s)	181
BpuMI	CCSGG	3 cut(s)	132, 241, 452
BsaAI	YACGTR	2 cut(s)	123, 169
BsaI	GGTCTC	1 cut(s)	75
BsaJI	CCNNGG	7 cut(s)	9, 45, 130, 210, 211, 322, 360
BsaXI	ACNNNNNCTCC	4 cut(s)	158, 164, 188, 194
Bsc4I	CCNNNNNNNGG	2 cut(s)	70, 223
Bse118I	RCCGGY	1 cut(s)	302
BseBI	CCWGG	3 cut(s)	11, 47, 212
BseDI	CCNNGG	7 cut(s)	9, 45, 130, 210, 211, 322, 360
BseGI	GGATG	1 cut(s)	429
BseLI	CCNNNNNNNGG	2 cut(s)	70, 223
BseRI	GAGGAG	2 cut(s)	172, 516
BseSI	GKGCMC	1 cut(s)	128
BseXI	GCAGC	2 cut(s)	326, 417
Bsh1236I	CGCG	5 cut(s)	146, 279, 300, 398, 499
BshFI	GGCC	6 cut(s)	8, 50, 63, 135, 216, 321
BsiHKAI	GWGCWC	1 cut(s)	128
BsiSI	CCGG	6 cut(s)	132, 241, 303, 318, 336, 452
BslFI	GGGAC	2 cut(s)	86, 434
BslI	CCNNNNNNNGG	2 cut(s)	70, 223
BsmAI	GTCTC	3 cut(s)	75, 319, 337
BsmBI	CGTCTC	2 cut(s)	319, 337
BsmFI	GGGAC	2 cut(s)	86, 434
BsnI	GGCC	6 cut(s)	8, 50, 63, 135, 216, 321
Bso31I	GGTCTC	1 cut(s)	75
Bsp1286I	GDGCHC	1 cut(s)	128
Bsp143I	GATC	3 cut(s)	228, 243, 378
BspACI	CCGC	6 cut(s)	117, 232, 261, 277, 298, 423
BspANI	GGCC	6 cut(s)	8, 50, 63, 135, 216, 321
BspFNI	CGCG	5 cut(s)	146, 279, 300, 398, 499
BspLI	GGNNCC	6 cut(s)	74, 75, 230, 245, 328, 450
BspPI	GGATC	4 cut(s)	223, 236, 238, 251
BspTNI	GGTCTC	1 cut(s)	75
BsrFI	RCCGGY	1 cut(s)	302
BssAI	RCCGGY	1 cut(s)	302
BssECI	CCNNGG	7 cut(s)	9, 45, 130, 210, 211, 322, 360
BssMI	GATC	3 cut(s)	228, 243, 378
BssT1I	CCWWGG	1 cut(s)	360
Bst2UI	CCWGG	3 cut(s)	11, 47, 212
Bst4CI	ACNGT	2 cut(s)	28, 481
Bst6I	CTCTTC	2 cut(s)	44, 197
BstBAI	YACGTR	2 cut(s)	123, 169
BstC8I	GCNNGC	4 cut(s)	277, 304, 308, 357
BstENI	CCTNNNNNAGG	1 cut(s)	221
BstF5I	GGATG	1 cut(s)	429
BstFNI	CGCG	5 cut(s)	146, 279, 300, 398, 499
BstH2I	RGCGCY	1 cut(s)	461
BstHHI	GCGC	3 cut(s)	148, 302, 460
BstKTI	GATC	3 cut(s)	231, 246, 381
BstMAI	GTCTC	3 cut(s)	75, 319, 337
BstMBI	GATC	3 cut(s)	228, 243, 378
BstMWI	GCNNNNNNNGC	2 cut(s)	132, 285
BstNI	CCWGG	3 cut(s)	11, 47, 212
BstNSI	RCATGY	1 cut(s)	310
BstSCI	CCNGG	6 cut(s)	9, 45, 130, 210, 239, 450
BstSLI	GKGCMC	1 cut(s)	128
BstUI	CGCG	5 cut(s)	146, 279, 300, 398, 499
BstV1I	GCAGC	2 cut(s)	326, 417
BstV2I	GAAGAC	2 cut(s)	46, 337
BstX2I	RGATCY	2 cut(s)	228, 243
BstYI	RGATCY	2 cut(s)	228, 243
BsuRI	GGCC	6 cut(s)	8, 50, 63, 135, 216, 321
BtsCI	GGATG	1 cut(s)	429
BtsIMutI	CAGTG	1 cut(s)	477
Cac8I	GCNNGC	4 cut(s)	277, 304, 308, 357
CfoI	GCGC	3 cut(s)	148, 302, 460
Cfr10I	RCCGGY	1 cut(s)	302
Cfr13I	GGNCC	6 cut(s)	7, 73, 134, 151, 214, 448
CseI	GACGC	2 cut(s)	268, 331
Csp6I	GTAC	1 cut(s)	172
CviAII	CATG	3 cut(s)	69, 307, 352
CviQI	GTAC	1 cut(s)	172
DpnI	GATC	3 cut(s)	230, 245, 380
DpnII	GATC	3 cut(s)	228, 243, 378
DrdI	GACNNNNNNGTC	1 cut(s)	20
DseDI	GACNNNNNNGTC	1 cut(s)	20
EaeI	YGGCCR	1 cut(s)	48
Eam1104I	CTCTTC	2 cut(s)	44, 197
EarI	CTCTTC	2 cut(s)	44, 197
EciI	GGCGGA	2 cut(s)	106, 221
Eco130I	CCWWGG	1 cut(s)	360
Eco31I	GGTCTC	1 cut(s)	75
Eco47I	GGWCC	3 cut(s)	73, 151, 448
Eco72I	CACGTG	2 cut(s)	123, 169
EcoNI	CCTNNNNNAGG	1 cut(s)	221
EcoO109I	RGGNCCY	2 cut(s)	73, 151
EcoRII	CCWGG	3 cut(s)	9, 45, 210
EcoT14I	CCWWGG	1 cut(s)	360
ErhI	CCWWGG	1 cut(s)	360
Esp3I	CGTCTC	2 cut(s)	319, 337
FaeI	CATG	3 cut(s)	72, 310, 355
FaiI	YATR	3 cut(s)	70, 308, 353
FaqI	GGGAC	2 cut(s)	86, 434
FatI	CATG	3 cut(s)	68, 306, 351
FauI	CCCGC	2 cut(s)	268, 284
Fnu4HI	GCNGC	3 cut(s)	340, 406, 423
FokI	GGATG	1 cut(s)	416
Fsp4HI	GCNGC	3 cut(s)	340, 406, 423
GlaI	GCGC	3 cut(s)	147, 301, 459
GluI	GCNGC	3 cut(s)	340, 406, 423
GsuI	CTGGAG	1 cut(s)	181
HaeII	RGCGCY	1 cut(s)	461
HaeIII	GGCC	6 cut(s)	8, 50, 63, 135, 216, 321
HapII	CCGG	6 cut(s)	132, 241, 303, 318, 336, 452
HgaI	GACGC	2 cut(s)	268, 331
HhaI	GCGC	3 cut(s)	148, 302, 460
Hin1II	CATG	3 cut(s)	72, 310, 355
Hin6I	GCGC	3 cut(s)	146, 300, 458
HinP1I	GCGC	3 cut(s)	146, 300, 458
HincII	GTYRAC	2 cut(s)	283, 367
HindII	GTYRAC	2 cut(s)	283, 367
HinfI	GANTC	2 cut(s)	113, 268
HpaII	CCGG	6 cut(s)	132, 241, 303, 318, 336, 452
HphI	GGTGA	3 cut(s)	16, 34, 229
Hpy166II	GTNNAC	5 cut(s)	31, 126, 172, 283, 367
Hpy188III	TCNNGA	1 cut(s)	376
Hpy8I	GTNNAC	5 cut(s)	31, 126, 172, 283, 367
Hpy99I	CGWCG	5 cut(s)	146, 161, 209, 374, 476
HpyAV	CCTTC	5 cut(s)	96, 172, 187, 196, 302
HpyCH4III	ACNGT	2 cut(s)	28, 481
HpyCH4IV	ACGT	4 cut(s)	122, 168, 369, 471
HpyCH4V	TGCA	1 cut(s)	126
HpyF10VI	GCNNNNNNNGC	2 cut(s)	132, 285
HpySE526I	ACGT	4 cut(s)	122, 168, 369, 471
Hsp92II	CATG	3 cut(s)	72, 310, 355
HspAI	GCGC	3 cut(s)	146, 300, 458
KflI	GGGWCCC	1 cut(s)	73
KroI	GCCGGC	1 cut(s)	302
KroNI	GCCGGC	1 cut(s)	304
Kzo9I	GATC	3 cut(s)	228, 243, 378
LmnI	GCTCC	2 cut(s)	332, 503
Lsp1109I	GCAGC	2 cut(s)	326, 417
LweI	GCATC	1 cut(s)	27
MaeII	ACGT	4 cut(s)	122, 168, 369, 471
MaeIII	GTNAC	2 cut(s)	22, 475
MalI	GATC	3 cut(s)	230, 245, 380
MboI	GATC	3 cut(s)	228, 243, 378
MboII	GAAGA	4 cut(s)	31, 46, 184, 337
MflI	RGATCY	2 cut(s)	228, 243
MhlI	GDGCHC	1 cut(s)	128
MlyI	GAGTC	1 cut(s)	107
MmeI	TCCRAC	1 cut(s)	114
MroNI	GCCGGC	1 cut(s)	302
MspI	CCGG	6 cut(s)	132, 241, 303, 318, 336, 452
MspR9I	CCNGG	6 cut(s)	11, 47, 132, 212, 241, 452
MvaI	CCWGG	3 cut(s)	11, 47, 212
MvnI	CGCG	5 cut(s)	146, 279, 300, 398, 499
MwoI	GCNNNNNNNGC	2 cut(s)	132, 285
NaeI	GCCGGC	1 cut(s)	304
NciI	CCSGG	3 cut(s)	132, 241, 452
NdeII	GATC	3 cut(s)	228, 243, 378
NgoMIV	GCCGGC	1 cut(s)	302
NlaIII	CATG	3 cut(s)	72, 310, 355
NlaIV	GGNNCC	6 cut(s)	74, 75, 230, 245, 328, 450
NmeAIII	GCCGAG	3 cut(s)	289, 303, 366
NmuCI	GTSAC	2 cut(s)	22, 475
NspI	RCATGY	1 cut(s)	310
PaeI	GCATGC	1 cut(s)	310
PasI	CCCWGGG	1 cut(s)	211
PcsI	WCGNNNNNNNCGW	1 cut(s)	165
PdiI	GCCGGC	1 cut(s)	304
PfeI	GAWTC	1 cut(s)	268
PflFI	GACNNNGTC	1 cut(s)	155
PkrI	GCNGC	3 cut(s)	341, 407, 424
PleI	GAGTC	1 cut(s)	107
PmaCI	CACGTG	2 cut(s)	123, 169
PmlI	CACGTG	2 cut(s)	123, 169
PpsI	GAGTC	1 cut(s)	107
Ppu21I	YACGTR	2 cut(s)	123, 169
PpuMI	RGGWCCY	2 cut(s)	73, 151
Psp5II	RGGWCCY	2 cut(s)	73, 151
Psp6I	CCWGG	3 cut(s)	9, 45, 210
PspCI	CACGTG	2 cut(s)	123, 169
PspGI	CCWGG	3 cut(s)	9, 45, 210
PspN4I	GGNNCC	6 cut(s)	74, 75, 230, 245, 328, 450
PspPI	GGNCC	6 cut(s)	7, 73, 134, 151, 214, 448
PspPPI	RGGWCCY	2 cut(s)	73, 151
PsuI	RGATCY	2 cut(s)	228, 243
PsyI	GACNNNGTC	1 cut(s)	155
RsaI	GTAC	1 cut(s)	173
RsaNI	GTAC	1 cut(s)	172
SatI	GCNGC	3 cut(s)	340, 406, 423
Sau3AI	GATC	3 cut(s)	228, 243, 378
Sau96I	GGNCC	6 cut(s)	7, 73, 134, 151, 214, 448
SchI	GAGTC	1 cut(s)	107
ScrFI	CCNGG	6 cut(s)	11, 47, 132, 212, 241, 452
SduI	GDGCHC	1 cut(s)	128
SetI	ASST	6 cut(s)	125, 156, 171, 372, 387, 474
SfaNI	GCATC	1 cut(s)	27
SinI	GGWCC	3 cut(s)	73, 151, 448
SphI	GCATGC	1 cut(s)	310
SsiI	CCGC	6 cut(s)	117, 232, 261, 277, 298, 423
SspI	AATATT	1 cut(s)	510
StyD4I	CCNGG	6 cut(s)	9, 45, 130, 210, 239, 450
StyI	CCWWGG	1 cut(s)	360
TaaI	ACNGT	2 cut(s)	28, 481
TaiI	ACGT	4 cut(s)	125, 171, 372, 474
TaqI	TCGA	1 cut(s)	102
TatI	WGTACW	1 cut(s)	171
TauI	GCSGC	1 cut(s)	425
TfiI	GAWTC	1 cut(s)	268
TscAI	CASTG	1 cut(s)	484
TseFI	GTSAC	2 cut(s)	22, 475
TseI	GCWGC	2 cut(s)	339, 405
Tsp45I	GTSAC	2 cut(s)	22, 475
TspDTI	ATGAA	1 cut(s)	46
TspGWI	ACGGA	2 cut(s)	130, 319
TspRI	CASTG	1 cut(s)	484
Tth111I	GACNNNGTC	1 cut(s)	155
VneI	GTGCAC	1 cut(s)	124
VpaK11BI	GGWCC	3 cut(s)	73, 151, 448
XagI	CCTNNNNNAGG	1 cut(s)	221
XceI	RCATGY	1 cut(s)	310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.