Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0007099

Physical Location & Seq

Genomic Coordinates Reverse (-)

66735557 .. 66736171

Gene Structure 615 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG478800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGTCCATCACCACCAGAAACACCACCAAACCAAAGTCGGAAATGTCTGACGTGTCACGCCGGACAATACCCACAACCCGCATTCACATAATGGCCCTAGACGGTATAGTCAATGTGAACTCACTTTTCTCATTTGCTCTCTTCATAGGCCTCACTTGGTACCCTGCCATCGACATCAACTCCATGCTCCTCGGCTCCAACACGGCCTGCGCTGCCGGTACCGATACAGCGGAGGGACTCATCTCATTCCACGTGTACTCTTTCAGCTGCTTTCTCTTCTCCAGCCTCATTGCCTTGGCTCTCAAGCAAGCCATCAAGATAAGCCAAAGTGGTTCTAGTAGTGGAAATGGTGGCTCGGATTCCGAGTTGCTTGGTGCCAACATGGGCCATGTTAACCAGGTGGGTTTGCGGGTCGGTACGCTGGTCTCGGCATTCGGGTCAGTTTTCGGATGCGGGTTCTTAATGATGGCCTTGGTGAACTTGGTTCAGATCAAATTGGGGAGGTTGAGTTGTGGGGATTTGTATACTTTCGCTGCCATTGGTCCTTTGGTGACTTTGGTTCCTTTGGCTCTTGTGATCTATGTTTTTCTTGTGCTTCATGCCTTTACTCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_trans_1_4 Glyco_transf_4 Glycos_transf_1

Protein Analysis

204

Amino Acids

21.64

Weight (kDa)

8.78

Isoelectric Point (pI)

31.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007099)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05950
fragaria_vesca	FvH4_3g37210 FvH4_7g23601
malus_domestica	MD01G1141800.v1.1 MD11G1091000.v1.1
prunus_persica	Prupe.2G242900_v2.0.a1 Prupe.6G067200_v2.0.a1
pyrus_communis	pycom01g16210 pycom11g07570
rosa_chinensis	RchiOBHm_Chr1g0368851 RchiOBHm_Chr5g0066951
rosa_laevigata	RLG00000027182 RLG00000027184 RLG00000027186 RLG00000035896
rosa_multiflora	Rmu_sc0008378.1_g000006 Rmu_sc0012799.1_g000008 Rmu_sc0030248.1_g000001
rosa_roxburghii	Rroxscaffold_1G00014170
rosa_rugosa	Rorug01G0345300 Rorug05G0380000
rosa_samantha	Rh1AG352400 Rh5BG456700 Rh5CG478800
rosa_wichuraiana	Rw5G041120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	107
Acc65I	GGTACC	2 cut(s)	159, 218
AccB1I	GGYRCC	3 cut(s)	159, 218, 374
AccI	GTMKAC	1 cut(s)	524
AciI	CCGC	4 cut(s)	79, 230, 409, 453
AcvI	CACGTG	1 cut(s)	253
AfaI	GTAC	4 cut(s)	161, 220, 257, 418
AflIII	ACRYGT	2 cut(s)	51, 252
AjiI	CACGTC	1 cut(s)	52
AjnI	CCWGG	1 cut(s)	396
AluBI	AGCT	1 cut(s)	267
AluI	AGCT	1 cut(s)	267
Alw26I	GTCTC	1 cut(s)	430
AoxI	GGCC	5 cut(s)	93, 148, 204, 385, 468
ApeKI	GCWGC	3 cut(s)	212, 267, 533
Asp718I	GGTACC	2 cut(s)	159, 218
AspLEI	GCGC	1 cut(s)	212
AspS9I	GGNCC	3 cut(s)	94, 385, 542
AsuHPI	GGTGA	2 cut(s)	487, 562
AvaII	GGWCC	1 cut(s)	542
BaeI	ACNNNNGTAYC	2 cut(s)	408, 441
BanI	GGYRCC	3 cut(s)	159, 218, 374
BbrPI	CACGTG	1 cut(s)	253
BbvI	GCAGC	3 cut(s)	199, 254, 520
BccI	CCATC	4 cut(s)	14, 176, 320, 460
BceAI	ACGGC	1 cut(s)	219
BciT130I	CCWGG	1 cut(s)	398
BcoDI	GTCTC	1 cut(s)	430
BfaI	CTAG	2 cut(s)	98, 336
BisI	GCNGC	3 cut(s)	213, 268, 534
BlsI	GCNGC	3 cut(s)	214, 269, 535
Bme1390I	CCNGG	1 cut(s)	398
Bme18I	GGWCC	1 cut(s)	542
BmgBI	CACGTC	1 cut(s)	52
BmgT120I	GGNCC	3 cut(s)	94, 385, 542
BmiI	GGNNCC	5 cut(s)	161, 196, 220, 376, 561
BmrFI	CCNGG	1 cut(s)	398
BmsI	GCATC	1 cut(s)	440
BpmI	CTGGAG	1 cut(s)	265
BpuEI	CTTGAG	1 cut(s)	287
BsaAI	YACGTR	1 cut(s)	253
BsaI	GGTCTC	1 cut(s)	430
BsaJI	CCNNGG	3 cut(s)	190, 294, 471
BsaXI	ACNNNNNCTCC	4 cut(s)	164, 194, 493, 523
Bse118I	RCCGGY	1 cut(s)	215
Bse3DI	GCAATG	1 cut(s)	288
BseBI	CCWGG	1 cut(s)	398
BseDI	CCNNGG	3 cut(s)	190, 294, 471
BseGI	GGATG	1 cut(s)	455
BseMI	GCAATG	1 cut(s)	288
BseRI	GAGGAG	1 cut(s)	179
BseXI	GCAGC	3 cut(s)	199, 254, 520
BshFI	GGCC	5 cut(s)	95, 150, 206, 387, 470
BshNI	GGYRCC	3 cut(s)	159, 218, 374
BsiSI	CCGG	2 cut(s)	61, 216
BslFI	GGGAC	1 cut(s)	249
BsmAI	GTCTC	1 cut(s)	430
BsmFI	GGGAC	1 cut(s)	249
BsmI	GAATGC	2 cut(s)	81, 431
BsnI	GGCC	5 cut(s)	95, 150, 206, 387, 470
Bso31I	GGTCTC	1 cut(s)	430
Bsp143I	GATC	2 cut(s)	489, 576
BspACI	CCGC	4 cut(s)	79, 230, 409, 453
BspANI	GGCC	5 cut(s)	95, 150, 206, 387, 470
BspLI	GGNNCC	5 cut(s)	161, 196, 220, 376, 561
BspT107I	GGYRCC	3 cut(s)	159, 218, 374
BspTNI	GGTCTC	1 cut(s)	430
BsrDI	GCAATG	1 cut(s)	288
BsrFI	RCCGGY	1 cut(s)	215
BssAI	RCCGGY	1 cut(s)	215
BssECI	CCNNGG	3 cut(s)	190, 294, 471
BssMI	GATC	2 cut(s)	489, 576
BssNAI	GTATAC	1 cut(s)	525
BssT1I	CCWWGG	2 cut(s)	294, 471
Bst1107I	GTATAC	1 cut(s)	525
Bst2UI	CCWGG	1 cut(s)	398
Bst4CI	ACNGT	1 cut(s)	104
Bst6I	CTCTTC	2 cut(s)	146, 281
BstBAI	YACGTR	1 cut(s)	253
BstC8I	GCNNGC	2 cut(s)	208, 309
BstF5I	GGATG	1 cut(s)	455
BstHHI	GCGC	1 cut(s)	212
BstKTI	GATC	2 cut(s)	492, 579
BstMAI	GTCTC	1 cut(s)	430
BstMBI	GATC	2 cut(s)	489, 576
BstMWI	GCNNNNNNNGC	1 cut(s)	212
BstNI	CCWGG	1 cut(s)	398
BstSCI	CCNGG	1 cut(s)	396
BstV1I	GCAGC	3 cut(s)	199, 254, 520
BstZ17I	GTATAC	1 cut(s)	525
BsuRI	GGCC	5 cut(s)	95, 150, 206, 387, 470
BtrI	CACGTC	1 cut(s)	52
BtsCI	GGATG	1 cut(s)	455
Cac8I	GCNNGC	2 cut(s)	208, 309
CfoI	GCGC	1 cut(s)	212
Cfr10I	RCCGGY	1 cut(s)	215
Cfr13I	GGNCC	3 cut(s)	94, 385, 542
CsiI	ACCWGGT	1 cut(s)	396
Csp6I	GTAC	4 cut(s)	160, 219, 256, 417
CviAII	CATG	4 cut(s)	184, 382, 389, 599
CviQI	GTAC	4 cut(s)	160, 219, 256, 417
DpnI	GATC	2 cut(s)	491, 578
DpnII	GATC	2 cut(s)	489, 576
DrdI	GACNNNNNNGTC	1 cut(s)	107
DseDI	GACNNNNNNGTC	1 cut(s)	107
Eam1104I	CTCTTC	2 cut(s)	146, 281
EarI	CTCTTC	2 cut(s)	146, 281
Eco130I	CCWWGG	2 cut(s)	294, 471
Eco147I	AGGCCT	1 cut(s)	150
Eco31I	GGTCTC	1 cut(s)	430
Eco47I	GGWCC	1 cut(s)	542
Eco72I	CACGTG	1 cut(s)	253
EcoRII	CCWGG	1 cut(s)	396
EcoT14I	CCWWGG	2 cut(s)	294, 471
ErhI	CCWWGG	2 cut(s)	294, 471
FaeI	CATG	4 cut(s)	187, 385, 392, 602
FaiI	YATR	9 cut(s)	89, 107, 146, 185, 383, 390, 525, 582, 600
FaqI	GGGAC	1 cut(s)	249
FatI	CATG	4 cut(s)	183, 381, 388, 598
FauI	CCCGC	3 cut(s)	86, 402, 446
FblI	GTMKAC	1 cut(s)	524
Fnu4HI	GCNGC	3 cut(s)	213, 268, 534
FokI	GGATG	1 cut(s)	462
Fsp4HI	GCNGC	3 cut(s)	213, 268, 534
FspBI	CTAG	2 cut(s)	98, 336
GlaI	GCGC	1 cut(s)	211
GluI	GCNGC	3 cut(s)	213, 268, 534
GsuI	CTGGAG	1 cut(s)	265
HaeIII	GGCC	5 cut(s)	95, 150, 206, 387, 470
HapII	CCGG	2 cut(s)	61, 216
HhaI	GCGC	1 cut(s)	212
Hin1II	CATG	4 cut(s)	187, 385, 392, 602
Hin6I	GCGC	1 cut(s)	210
HinP1I	GCGC	1 cut(s)	210
HincII	GTYRAC	1 cut(s)	394
HindII	GTYRAC	1 cut(s)	394
HinfI	GANTC	2 cut(s)	237, 359
HpaI	GTTAAC	1 cut(s)	394
HpaII	CCGG	2 cut(s)	61, 216
HphI	GGTGA	2 cut(s)	487, 562
Hpy166II	GTNNAC	5 cut(s)	118, 256, 394, 478, 525
Hpy188I	TCNGA	6 cut(s)	40, 49, 358, 364, 449, 489
Hpy188III	TCNNGA	1 cut(s)	316
Hpy8I	GTNNAC	5 cut(s)	118, 256, 394, 478, 525
HpyCH4III	ACNGT	1 cut(s)	104
HpyCH4IV	ACGT	2 cut(s)	51, 252
HpyF10VI	GCNNNNNNNGC	1 cut(s)	212
HpySE526I	ACGT	2 cut(s)	51, 252
Hsp92II	CATG	4 cut(s)	187, 385, 392, 602
HspAI	GCGC	1 cut(s)	210
KpnI	GGTACC	2 cut(s)	163, 222
KspAI	GTTAAC	1 cut(s)	394
Kzo9I	GATC	2 cut(s)	489, 576
LmnI	GCTCC	2 cut(s)	192, 200
LpnPI	CCDG	9 cut(s)	28, 74, 177, 220, 229, 295, 383, 407, 410
Lsp1109I	GCAGC	3 cut(s)	199, 254, 520
LweI	GCATC	1 cut(s)	440
MabI	ACCWGGT	1 cut(s)	396
MaeI	CTAG	2 cut(s)	98, 336
MaeII	ACGT	2 cut(s)	51, 252
MaeIII	GTNAC	2 cut(s)	54, 550
MalI	GATC	2 cut(s)	491, 578
MboI	GATC	2 cut(s)	489, 576
MboII	GAAGA	2 cut(s)	133, 268
MluCI	AATT	1 cut(s)	494
MlyI	GAGTC	1 cut(s)	231
MmeI	TCCRAC	2 cut(s)	18, 222
MnlI	CCTC	5 cut(s)	161, 200, 226, 296, 495
MseI	TTAA	2 cut(s)	393, 461
MspA1I	CMGCKG	2 cut(s)	230, 267
MspI	CCGG	2 cut(s)	61, 216
MspR9I	CCNGG	1 cut(s)	398
Mva1269I	GAATGC	2 cut(s)	81, 431
MvaI	CCWGG	1 cut(s)	398
MwoI	GCNNNNNNNGC	1 cut(s)	212
NdeII	GATC	2 cut(s)	489, 576
NlaIII	CATG	4 cut(s)	187, 385, 392, 602
NlaIV	GGNNCC	5 cut(s)	161, 196, 220, 376, 561
NmeAIII	GCCGAG	2 cut(s)	171, 407
NmuCI	GTSAC	2 cut(s)	54, 550
PceI	AGGCCT	1 cut(s)	150
PctI	GAATGC	2 cut(s)	81, 431
PfeI	GAWTC	1 cut(s)	359
PkrI	GCNGC	3 cut(s)	214, 269, 535
PleI	GAGTC	1 cut(s)	231
PmaCI	CACGTG	1 cut(s)	253
PmlI	CACGTG	1 cut(s)	253
PpsI	GAGTC	1 cut(s)	231
Ppu21I	YACGTR	1 cut(s)	253
Psp6I	CCWGG	1 cut(s)	396
PspCI	CACGTG	1 cut(s)	253
PspGI	CCWGG	1 cut(s)	396
PspN4I	GGNNCC	5 cut(s)	161, 196, 220, 376, 561
PspPI	GGNCC	3 cut(s)	94, 385, 542
PvuII	CAGCTG	1 cut(s)	267
RsaI	GTAC	4 cut(s)	161, 220, 257, 418
RsaNI	GTAC	4 cut(s)	160, 219, 256, 417
SaqAI	TTAA	2 cut(s)	393, 461
SatI	GCNGC	3 cut(s)	213, 268, 534
Sau3AI	GATC	2 cut(s)	489, 576
Sau96I	GGNCC	3 cut(s)	94, 385, 542
SchI	GAGTC	1 cut(s)	231
ScrFI	CCNGG	1 cut(s)	398
SetI	ASST	5 cut(s)	54, 255, 269, 402, 506
SexAI	ACCWGGT	1 cut(s)	396
SfaNI	GCATC	1 cut(s)	440
SinI	GGWCC	1 cut(s)	542
SmlI	CTYRAG	1 cut(s)	302
SmoI	CTYRAG	1 cut(s)	302
Sse9I	AATT	1 cut(s)	494
SseBI	AGGCCT	1 cut(s)	150
SsiI	CCGC	4 cut(s)	79, 230, 409, 453
SspMI	CTAG	2 cut(s)	98, 336
StuI	AGGCCT	1 cut(s)	150
StyD4I	CCNGG	1 cut(s)	396
StyI	CCWWGG	2 cut(s)	294, 471
TaaI	ACNGT	1 cut(s)	104
TaiI	ACGT	2 cut(s)	54, 255
TaqI	TCGA	1 cut(s)	171
TasI	AATT	1 cut(s)	494
TatI	WGTACW	1 cut(s)	255
TfiI	GAWTC	1 cut(s)	359
Tru1I	TTAA	2 cut(s)	393, 461
Tru9I	TTAA	2 cut(s)	393, 461
TseFI	GTSAC	2 cut(s)	54, 550
TseI	GCWGC	3 cut(s)	212, 267, 533
Tsp45I	GTSAC	2 cut(s)	54, 550
TspDTI	ATGAA	2 cut(s)	133, 587
VpaK11BI	GGWCC	1 cut(s)	542
XcmI	CCANNNNNNNNNTGG	1 cut(s)	544
XmiI	GTMKAC	1 cut(s)	524
XspI	CTAG	2 cut(s)	98, 336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.