Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002329

Physical Location & Seq

Genomic Coordinates Forward (+)

2508883 .. 2510503

Gene Structure 1621 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G07850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1371 bp

ATGGATTCTACTTCATCGGAAGTAAAAATCGTTTCTCAATGCTTTGTTAAACCCAAAACCATCCCTGAAAAATGGAAAGAGCCATACCATTTATCACCGTTGGATCTTGTGATGCTCTCTATGCATTACCTCCAAAATGGTCTTCTCTTTCTCAAATCTGATGATGCAACCAAAACAAAAGATTTCATGGAGACTTGGCTACAAAAGCTTAGAGATTCTCTAGCTGAAACCCTTGTCCATTTTTATCCGCTCGCGGGTCGTCTCTCGACTTTAAAAACCGATAATCCGAGATCCTACTCTGTGTTTGTGGATTGTAATGACAGTCCCGGAGCTGGATTTATCCATGCCAAATCGGATCTAAGTGTAAGAGATATTGTTGGATCCAACTATGTTCCTTTGGTTGTTCAATCTTTCTTTGACCACCATAAAGCCGTGAGCCATGATGGTCACACCATGAGTCTCTTCTCAGTCAAGGTAACAGAATTGGTAGATGGAGTGTTCATTGGATTTTCATTGAATCACGCTGTGGGAGATGGAGGTTCCTTGTGGCATTTTTTCAACTCTTTGTCGGAGATTTTCAATGCACAAGAAACCGATAACTTGCTTCTCAAGAATCCTCCAGTCCTTTCACGTTGGTTTCCTAAAGGGTACGGTCCTGTGTACAACCTTCCTTTCACTCACTCTGATGAATTCATTAGCCGATTCGAATCACCGGTCTTGAAGGAGAGAATATTCCATTTCTCGTCTGAAACAATAACATCATTGAAATCAAAGGCTAATGAAGAAAGCAGAACAACAACAATTTCTTCTTTTCAAGCGTTAGCCGCATTTATGTGGAGATGCATTACAAGAGCAAGAAACTTACCTTATGATCATGAAATTCGTTGTAGCCTTGCCGCTAACAATGGAACAAAATTGGATCCACCATTGTCTTTGAGCTATCTTGGTAATTGTCTTTCTGCTGTAAAGTCCAAGACCGTTACATCCGGTGAGCTACTAGAAAATGATTTGGGATGGGCTGCTTTGAAAATGCATGAAGCTGTGATTGGAAACACTAGTGAAGTGGTCTCGGAGACAATCAAAAACTGGTTGAAATCATCTTATGTTTTCCATTTAGAAAAACTTTTGGGAGCGATGGTGGTTCACATTGGAAGCTCTCCGAGGTTTAAGATGTATGAATGCGAGTTTGGGATGGGAAAAGCGGTTGCGGTTAGAAGCGGTTATGGCGGTAAGTTTGATGGGAAGATATCAGCATATGCAGGAAGAGAAGGAGGAGGAACCATAGATTTGGAAGTATGTCTTCTTCCAGAGTTTATGGAAGCTTTGGAATCAGATCAAGAATTCATGTCCGTTGTCTCTTCTTCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010143 GO:0016043 GO:0030154 GO:0032502 GO:0032989 GO:0043170 GO:0044424 GO:0044464 GO:0048468 GO:0048856 GO:0048869 GO:0051179 GO:0071704 GO:0071840 GO:0090558 GO:0090626 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transferase

Protein Analysis

456

Amino Acids

50.76

Weight (kDa)

6.07

Isoelectric Point (pI)

43.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	8 - 449	6.6e-72	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002329)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07850 AT5G42830
fragaria_vesca	FvH4_2g34050 FvH4_2g34060 FvH4_2g34061
malus_domestica	MD08G1096500.v1.1 MD08G1096600.v1.1 MD15G1079200.v1.1 MD15G1079300.v1.1
prunus_persica	Prupe.1G432300_v2.0.a1 Prupe.1G432400_v2.0.a1 Prupe.1G432500_v2.0.a1
pyrus_communis	pycom08g07870 pycom15g07380
rosa_chinensis	RchiOBHm_Chr6g0308291 RchiOBHm_Chr6g0308301 RchiOBHm_Chr6g0308421
rosa_laevigata	RLG00000010650
rosa_multiflora	Rmu_co8463877.1_g000001 Rmu_sc0003583.1_g000001 Rmu_sc0005523.1_g000006 Rmu_sc0011796.1_g000002 Rmu_ssc0000355.1_g000011
rosa_roxburghii	Rroxscaffold_7G00160150 Rroxscaffold_7G00160240 Rroxscaffold_7G00160280
rosa_rugosa	Rorug06G0366000 Rorug06G0366500
rosa_samantha	Rh6AG474900 Rh6AG475000 Rh6AG476200 Rh6BG485500 Rh6BG485600 Rh6BG485700 Rh6BG486400 Rh6CG490600 Rh6CG490800 Rh6CG490900 Rh6CG491600 Rh6DG477200
rosa_wichuraiana	Rw6G041430 Rw6G041500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	250
AccII	CGCG	1 cut(s)	254
AciI	CCGC	8 cut(s)	248, 254, 825, 897, 1202, 1208, 1218, 1227
AclWI	GGATC	7 cut(s)	111, 285, 363, 375, 388, 914, 927
AcsI	RAATTY	3 cut(s)	689, 879, 1340
AdeI	CACNNNGTG	1 cut(s)	526
AfaI	GTAC	2 cut(s)	650, 662
AfiI	CCNNNNNNNGG	2 cut(s)	254, 332
AgeI	ACCGGT	1 cut(s)	712
AgsI	TTSAA	9 cut(s)	407, 517, 559, 580, 721, 766, 815, 1027, 1093
AhlI	ACTAGT	1 cut(s)	1055
AjuI	GAANNNNNNNTTGG	6 cut(s)	126, 158, 1029, 1061, 1170, 1202
AluBI	AGCT	8 cut(s)	208, 224, 332, 939, 994, 1040, 1155, 1322
AluI	AGCT	8 cut(s)	208, 224, 332, 939, 994, 1040, 1155, 1322
Alw26I	GTCTC	6 cut(s)	185, 266, 464, 1067, 1072, 1360
AlwI	GGATC	7 cut(s)	111, 285, 363, 375, 388, 914, 927
ApeKI	GCWGC	1 cut(s)	1019
ApoI	RAATTY	3 cut(s)	689, 879, 1340
ArsI	GACNNNNNNTTYG	2 cut(s)	699, 731
AsiGI	ACCGGT	1 cut(s)	712
AspS9I	GGNCC	1 cut(s)	653
AsuC2I	CCSGG	1 cut(s)	327
AsuHPI	GGTGA	3 cut(s)	87, 702, 1001
AsuII	TTCGAA	1 cut(s)	705
AvaII	GGWCC	1 cut(s)	653
BamHI	GGATCC	2 cut(s)	380, 919
BarI	GAAGNNNNNNTAC	2 cut(s)	1287, 1319
BbsI	GAAGAC	2 cut(s)	134, 1292
BbvI	GCAGC	1 cut(s)	1006
BccI	CCATC	8 cut(s)	68, 437, 485, 527, 1008, 1129, 1186, 1232
BceAI	ACGGC	1 cut(s)	416
BclI	TGATCA	1 cut(s)	871
BcnI	CCSGG	1 cut(s)	327
BcoDI	GTCTC	6 cut(s)	185, 266, 464, 1067, 1072, 1360
BcuI	ACTAGT	1 cut(s)	1055
BfaI	CTAG	3 cut(s)	221, 998, 1056
BisI	GCNGC	3 cut(s)	825, 897, 1020
BlsI	GCNGC	3 cut(s)	826, 898, 1021
Bme1390I	CCNGG	1 cut(s)	327
Bme18I	GGWCC	1 cut(s)	653
BmgT120I	GGNCC	1 cut(s)	653
BmiI	GGNNCC	4 cut(s)	382, 541, 921, 1279
BmrFI	CCNGG	1 cut(s)	327
BmsI	GCATC	3 cut(s)	102, 154, 830
BpiI	GAAGAC	2 cut(s)	134, 1292
BpmI	CTGGAG	1 cut(s)	603
Bpu14I	TTCGAA	1 cut(s)	705
BpuEI	CTTGAG	1 cut(s)	593
BpuMI	CCSGG	1 cut(s)	327
BsaBI	GATNNNNATC	1 cut(s)	706
BsaI	GGTCTC	1 cut(s)	1072
BsaJI	CCNNGG	1 cut(s)	1160
BsaWI	WCCGGW	2 cut(s)	712, 986
BsaXI	ACNNNNNCTCC	2 cut(s)	1122, 1152
Bsc4I	CCNNNNNNNGG	2 cut(s)	254, 332
Bse118I	RCCGGY	1 cut(s)	712
Bse1I	ACTGG	2 cut(s)	620, 1091
Bse8I	GATNNNNATC	1 cut(s)	706
BseDI	CCNNGG	1 cut(s)	1160
BseGI	GGATG	4 cut(s)	60, 983, 1019, 1197
BseJI	GATNNNNATC	1 cut(s)	706
BseLI	CCNNNNNNNGG	2 cut(s)	254, 332
BseMII	CTCAG	1 cut(s)	480
BseNI	ACTGG	2 cut(s)	620, 1091
BseRI	GAGGAG	1 cut(s)	1287
BseXI	GCAGC	1 cut(s)	1006
Bsh1236I	CGCG	1 cut(s)	254
BshTI	ACCGGT	1 cut(s)	712
BsiSI	CCGG	3 cut(s)	327, 713, 987
BslFI	GGGAC	1 cut(s)	309
BslI	CCNNNNNNNGG	2 cut(s)	254, 332
BsmAI	GTCTC	6 cut(s)	185, 266, 464, 1067, 1072, 1360
BsmBI	CGTCTC	1 cut(s)	266
BsmFI	GGGAC	1 cut(s)	309
BsmI	GAATGC	1 cut(s)	1184
Bso31I	GGTCTC	1 cut(s)	1072
Bsp119I	TTCGAA	1 cut(s)	705
Bsp1407I	TGTACA	1 cut(s)	660
Bsp143I	GATC	7 cut(s)	103, 290, 355, 380, 871, 919, 1333
BspACI	CCGC	8 cut(s)	248, 254, 825, 897, 1202, 1208, 1218, 1227
BspCNI	CTCAG	1 cut(s)	479
BspFNI	CGCG	1 cut(s)	254
BspHI	TCATGA	1 cut(s)	874
BspLI	GGNNCC	4 cut(s)	382, 541, 921, 1279
BspPI	GGATC	7 cut(s)	111, 285, 363, 375, 388, 914, 927
BspT104I	TTCGAA	1 cut(s)	705
BspTNI	GGTCTC	1 cut(s)	1072
BsrBI	CCGCTC	1 cut(s)	250
BsrFI	RCCGGY	1 cut(s)	712
BsrGI	TGTACA	1 cut(s)	660
BsrI	ACTGG	2 cut(s)	620, 1091
BssAI	RCCGGY	1 cut(s)	712
BssECI	CCNNGG	1 cut(s)	1160
BssMI	GATC	7 cut(s)	103, 290, 355, 380, 871, 919, 1333
Bst4CI	ACNGT	4 cut(s)	99, 323, 653, 979
Bst6I	CTCTTC	3 cut(s)	467, 1258, 1363
BstAUI	TGTACA	1 cut(s)	660
BstBI	TTCGAA	1 cut(s)	705
BstC8I	GCNNGC	1 cut(s)	252
BstDEI	CTNAG	3 cut(s)	209, 359, 466
BstF5I	GGATG	4 cut(s)	60, 983, 1019, 1197
BstFNI	CGCG	1 cut(s)	254
BstKTI	GATC	7 cut(s)	106, 293, 358, 383, 874, 922, 1336
BstMAI	GTCTC	6 cut(s)	185, 266, 464, 1067, 1072, 1360
BstMBI	GATC	7 cut(s)	103, 290, 355, 380, 871, 919, 1333
BstMWI	GCNNNNNNNGC	4 cut(s)	121, 205, 824, 1224
BstSCI	CCNGG	1 cut(s)	325
BstUI	CGCG	1 cut(s)	254
BstV1I	GCAGC	1 cut(s)	1006
BstV2I	GAAGAC	2 cut(s)	134, 1292
BstX2I	RGATCY	5 cut(s)	103, 290, 355, 380, 919
BstXI	CCANNNNNNTGG	1 cut(s)	1288
BstYI	RGATCY	5 cut(s)	103, 290, 355, 380, 919
BtgZI	GCGATG	1 cut(s)	1148
BtsCI	GGATG	4 cut(s)	60, 983, 1019, 1197
Cac8I	GCNNGC	1 cut(s)	252
CciI	TCATGA	1 cut(s)	874
Cfr10I	RCCGGY	1 cut(s)	712
Cfr13I	GGNCC	1 cut(s)	653
Csp6I	GTAC	2 cut(s)	649, 661
CspAI	ACCGGT	1 cut(s)	712
CviAII	CATG	7 cut(s)	187, 344, 440, 454, 875, 1034, 1345
CviQI	GTAC	2 cut(s)	649, 661
DdeI	CTNAG	3 cut(s)	209, 359, 466
DpnI	GATC	7 cut(s)	105, 292, 357, 382, 873, 921, 1335
DpnII	GATC	7 cut(s)	103, 290, 355, 380, 871, 919, 1333
DraI	TTTAAA	1 cut(s)	273
DraIII	CACNNNGTG	1 cut(s)	526
Eam1104I	CTCTTC	3 cut(s)	467, 1258, 1363
EarI	CTCTTC	3 cut(s)	467, 1258, 1363
Eco31I	GGTCTC	1 cut(s)	1072
Eco32I	GATATC	1 cut(s)	1248
Eco47I	GGWCC	1 cut(s)	653
EcoRI	GAATTC	2 cut(s)	689, 1340
EcoRV	GATATC	1 cut(s)	1248
EcoT22I	ATGCAT	3 cut(s)	126, 845, 1035
Esp3I	CGTCTC	1 cut(s)	266
FaeI	CATG	7 cut(s)	190, 347, 443, 457, 878, 1037, 1348
FalI	AAGNNNNNCTT	2 cut(s)	1284, 1316
FaqI	GGGAC	1 cut(s)	309
FatI	CATG	7 cut(s)	186, 343, 439, 453, 874, 1033, 1344
FauI	CCCGC	1 cut(s)	247
FauNDI	CATATG	1 cut(s)	1255
FbaI	TGATCA	1 cut(s)	871
Fnu4HI	GCNGC	3 cut(s)	825, 897, 1020
FokI	GGATG	4 cut(s)	47, 970, 1026, 1204
Fsp4HI	GCNGC	3 cut(s)	825, 897, 1020
FspBI	CTAG	3 cut(s)	221, 998, 1056
GluI	GCNGC	3 cut(s)	825, 897, 1020
GsuI	CTGGAG	1 cut(s)	603
HapII	CCGG	3 cut(s)	327, 713, 987
Hin1II	CATG	7 cut(s)	190, 347, 443, 457, 878, 1037, 1348
HindIII	AAGCTT	2 cut(s)	206, 1320
HinfI	GANTC	8 cut(s)	5, 215, 457, 517, 613, 702, 707, 1328
HpaII	CCGG	3 cut(s)	327, 713, 987
HphI	GGTGA	3 cut(s)	87, 702, 1001
Hpy166II	GTNNAC	2 cut(s)	661, 1144
Hpy188III	TCNNGA	7 cut(s)	265, 610, 718, 875, 1307, 1337, 1368
Hpy8I	GTNNAC	2 cut(s)	661, 1144
HpyAV	CCTTC	3 cut(s)	677, 715, 1262
HpyCH4III	ACNGT	4 cut(s)	99, 323, 653, 979
HpyCH4IV	ACGT	1 cut(s)	631
HpyCH4V	TGCA	6 cut(s)	124, 167, 584, 843, 1033, 1259
HpyF10VI	GCNNNNNNNGC	4 cut(s)	121, 205, 824, 1224
HpyF3I	CTNAG	3 cut(s)	209, 359, 466
HpySE526I	ACGT	1 cut(s)	631
Hsp92II	CATG	7 cut(s)	190, 347, 443, 457, 878, 1037, 1348
Ksp22I	TGATCA	1 cut(s)	871
Kzo9I	GATC	7 cut(s)	103, 290, 355, 380, 871, 919, 1333
LmnI	GCTCC	2 cut(s)	329, 1130
Lsp1109I	GCAGC	1 cut(s)	1006
LweI	GCATC	3 cut(s)	102, 154, 830
MaeI	CTAG	3 cut(s)	221, 998, 1056
MaeII	ACGT	1 cut(s)	631
MaeIII	GTNAC	3 cut(s)	446, 475, 979
MalI	GATC	7 cut(s)	105, 292, 357, 382, 873, 921, 1335
MbiI	CCGCTC	1 cut(s)	250
MboI	GATC	7 cut(s)	103, 290, 355, 380, 871, 919, 1333
MflI	RGATCY	5 cut(s)	103, 290, 355, 380, 919
MluCI	AATT	7 cut(s)	482, 689, 801, 879, 914, 949, 1340
MlyI	GAGTC	1 cut(s)	466
MmeI	TCCRAC	4 cut(s)	81, 358, 408, 549
MnlI	CCTC	6 cut(s)	140, 530, 627, 1155, 1265, 1268
Mph1103I	ATGCAT	3 cut(s)	126, 845, 1035
MseI	TTAA	3 cut(s)	48, 272, 1167
MslI	CAYNNNNRTG	2 cut(s)	684, 832
MspI	CCGG	3 cut(s)	327, 713, 987
MspR9I	CCNGG	1 cut(s)	327
Mva1269I	GAATGC	1 cut(s)	1184
MvnI	CGCG	1 cut(s)	254
MwoI	GCNNNNNNNGC	4 cut(s)	121, 205, 824, 1224
NciI	CCSGG	1 cut(s)	327
NdeI	CATATG	1 cut(s)	1255
NdeII	GATC	7 cut(s)	103, 290, 355, 380, 871, 919, 1333
NlaIII	CATG	7 cut(s)	190, 347, 443, 457, 878, 1037, 1348
NlaIV	GGNNCC	4 cut(s)	382, 541, 921, 1279
NmuCI	GTSAC	1 cut(s)	446
NsiI	ATGCAT	3 cut(s)	126, 845, 1035
NspV	TTCGAA	1 cut(s)	705
PagI	TCATGA	1 cut(s)	874
PctI	GAATGC	1 cut(s)	1184
PfeI	GAWTC	7 cut(s)	5, 215, 517, 613, 702, 707, 1328
PfoI	TCCNGGA	1 cut(s)	325
PinAI	ACCGGT	1 cut(s)	712
PkrI	GCNGC	3 cut(s)	826, 898, 1021
PleI	GAGTC	1 cut(s)	465
PpsI	GAGTC	1 cut(s)	465
PspN4I	GGNNCC	4 cut(s)	382, 541, 921, 1279
PspPI	GGNCC	1 cut(s)	653
PsuI	RGATCY	5 cut(s)	103, 290, 355, 380, 919
RsaI	GTAC	2 cut(s)	650, 662
RsaNI	GTAC	2 cut(s)	649, 661
RseI	CAYNNNNRTG	2 cut(s)	684, 832
SaqAI	TTAA	3 cut(s)	48, 272, 1167
SatI	GCNGC	3 cut(s)	825, 897, 1020
Sau3AI	GATC	7 cut(s)	103, 290, 355, 380, 871, 919, 1333
Sau96I	GGNCC	1 cut(s)	653
SchI	GAGTC	1 cut(s)	466
ScrFI	CCNGG	1 cut(s)	327
SfaNI	GCATC	3 cut(s)	102, 154, 830
SfuI	TTCGAA	1 cut(s)	705
SinI	GGWCC	1 cut(s)	653
SmiMI	CAYNNNNRTG	2 cut(s)	684, 832
SmlI	CTYRAG	1 cut(s)	608
SmoI	CTYRAG	1 cut(s)	608
SpeI	ACTAGT	1 cut(s)	1055
Sse9I	AATT	7 cut(s)	482, 689, 801, 879, 914, 949, 1340
SsiI	CCGC	8 cut(s)	248, 254, 825, 897, 1202, 1208, 1218, 1227
SspI	AATATT	1 cut(s)	732
SspMI	CTAG	3 cut(s)	221, 998, 1056
StyD4I	CCNGG	1 cut(s)	325
TaaI	ACNGT	4 cut(s)	99, 323, 653, 979
TaiI	ACGT	1 cut(s)	634
TaqI	TCGA	2 cut(s)	266, 705
TasI	AATT	7 cut(s)	482, 689, 801, 879, 914, 949, 1340
TatI	WGTACW	1 cut(s)	660
TauI	GCSGC	2 cut(s)	827, 899
TfiI	GAWTC	7 cut(s)	5, 215, 517, 613, 702, 707, 1328
Tru1I	TTAA	3 cut(s)	48, 272, 1167
Tru9I	TTAA	3 cut(s)	48, 272, 1167
TseFI	GTSAC	1 cut(s)	446
TseI	GCWGC	1 cut(s)	1019
Tsp45I	GTSAC	1 cut(s)	446
TspGWI	ACGGA	1 cut(s)	1339
VpaK11BI	GGWCC	1 cut(s)	653
XapI	RAATTY	3 cut(s)	689, 879, 1340
XspI	CTAG	3 cut(s)	221, 998, 1056
Zsp2I	ATGCAT	3 cut(s)	126, 845, 1035

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.