FvH4_2g34050

acetyltransferase At3g50280-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0002329
Physical Location & Seq
Forward (+)
25390908 .. 25392277
1370 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g34050.t1

Sequence Viewer

Length: 1362 bp
ATGGCTTCCCCTAGTGTCAGACACCTCTCAGAGTGCTTCATCCGGCCACACCATGTTTCAGAAGAATCGAAGCAACCCTTTTACCTCACTCCCAGTGACCTCGCCATGCTCTCCGCCCATTACATCCAGAAAGGCCTCCTCTTCACCAAACCTCCTGAAGCAAGCAACCCCAGTTTTCTCGATACCCTTTTGGCCAAACTGAAGCACTCTCTTTCTCTTGCGCTCGTTCACTTCTACCCTATCGCCGGCCGCCTTGTCACCAAGAAAGAACAAGACCCTCCTGTGTACTTGGTCTACGTCGACTGCAGCAACAGCCCCGGAGCCAAGTTCATCCATGCTTCTCTTGAAATGTCTATCTCTGACATTCTCTCCCCAACTGATGTGCCCTTGGTGGTTCAGTCCTTCTTTGATCACGACAGGGCGGTCAACCACGATGGCCACACCACGTCACTGCTGACGGCTAAAGTGACCGAGTTGGTGGACGGCGTTTTCATAGGGCTGTCCATGAACCACTGTCTCGGCGACGGAACGTCTTACTGGAACTTCTTCAACACTTGGTCTGAGATATTCCAAGCGCAAGGGAGCAACATCACTCTTTCCAATCCACCAGTGTTGGATCGATGCTTTCCTGAAGGTCATGGTCCTATTATCAGCCTACCCTTCACAGACCCAAGTGAGTTCATTGACAGATTCGAAGCACCAAAACTCAGAGAGAGAATGTTTCACTTCTCCTCGGAATCCCTAGCCAACCTCAAAGCCAAGGCCAATTCAGAGTGCAATACTAGAAAAATCTCCACCTTCCAGGCATTGTCTGCTCTTGTCTGGAGGACTATTACTCGAGCACGTTTTCTACCTCCAGATCAAGAAACCAGTTGTAGATTGGCTGCGAATAACAGAGCAAGACTAGACCCGCCATTGGCTCCAAATTACTTCGGCAACTCAGTCTATCCCATCACATCAAAACCGATCAAAGCTGGTGAGTTGCTTGATCACGGGCTTGGATGGGCCGCGTTTAAGGTTCACCGGGCTGTGGTAAACCTCAATCACCAAGCTCTAAAAGGATTTCTTGATCACTTGTTAAAGTCTCCCACTGTGTTTAGTCTGCGGTATTTCGACCCGTTTAGTGTGATGATGGGGAGTAGTCCAAGATTCGACATGTATAGAAATGAATTTGGGATGGGAAAGGCTGTGGCGCTTCGAAGTGGGTATGCCAACAAGTTTAGTGGCAAAGTGTCGTCGTTTCAAGGGGGCGAAGCAGGAAGCATAGACTTGGAGGTGTGTCTTCCTCCAGAGGCAATGAGGGCTCTTGAATCTGATGTTGAGTTTATGGAAGCTGCTTCTGTAGCAAGTTATGATCAATAA

Protein Analysis

454

Amino Acids

50.29

Weight (kDa)

6.49

Isoelectric Point (pI)

40.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 22 - 443 3.9e-69 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 422
AccI GTMKAC 2 cut(s) 294, 300
AccII CGCG 1 cut(s) 1010
AciI CCGC 6 cut(s) 114, 250, 422, 911, 1008, 1105
AclWI GGATC 1 cut(s) 624
AcoI YGGCCR 4 cut(s) 44, 192, 247, 436
AcsI RAATTY 1 cut(s) 1169
AcuI CTGAAG 3 cut(s) 177, 221, 651
AfaI GTAC 1 cut(s) 287
AfiI CCNNNNNNNGG 3 cut(s) 245, 916, 1030
AflIII ACRYGT 1 cut(s) 1155
AgsI TTSAA 4 cut(s) 347, 550, 1244, 1310
AhdI GACNNNNNGTC 1 cut(s) 529
AjiI CACGTC 1 cut(s) 447
AjnI CCWGG 1 cut(s) 801
AluBI AGCT 3 cut(s) 974, 1052, 1334
AluI AGCT 3 cut(s) 974, 1052, 1334
Alw21I GWGCWC 1 cut(s) 844
Alw26I GTCTC 2 cut(s) 521, 1089
AlwI GGATC 1 cut(s) 624
Ama87I CYCGRG 1 cut(s) 837
AoxI GGCC 7 cut(s) 44, 133, 192, 247, 436, 762, 1005
ApeKI GCWGC 3 cut(s) 306, 884, 1334
ApoI RAATTY 1 cut(s) 1169
Asp700I GAANNNNTTC 1 cut(s) 545
AspLEI GCGC 3 cut(s) 223, 577, 1195
AspS9I GGNCC 2 cut(s) 641, 1005
AsuC2I CCSGG 2 cut(s) 318, 1025
AsuHPI GGTGA 5 cut(s) 136, 250, 989, 1013, 1037
AsuII TTCGAA 2 cut(s) 693, 1198
AvaI CYCGRG 1 cut(s) 837
AvaII GGWCC 1 cut(s) 641
BaeGI GKGCMC 1 cut(s) 387
BalI TGGCCA 2 cut(s) 194, 438
BanII GRGCYC 1 cut(s) 1306
BbsI GAAGAC 1 cut(s) 1274
Bbv12I GWGCWC 1 cut(s) 844
BbvI GCAGC 3 cut(s) 318, 871, 1321
BccI CCATC 5 cut(s) 428, 959, 996, 1126, 1171
BceAI ACGGC 2 cut(s) 474, 499
BciT130I CCWGG 1 cut(s) 803
BclI TGATCA 4 cut(s) 409, 988, 1069, 1354
BcnI CCSGG 2 cut(s) 318, 1025
BcoDI GTCTC 2 cut(s) 521, 1089
BfaI CTAG 4 cut(s) 12, 743, 783, 905
BfmI CTRYAG 2 cut(s) 304, 1341
BfoI RGCGCY 1 cut(s) 1196
BisI GCNGC 5 cut(s) 250, 307, 885, 1008, 1335
BlsI GCNGC 5 cut(s) 251, 308, 886, 1009, 1336
Bme1390I CCNGG 3 cut(s) 318, 803, 1025
Bme18I GGWCC 1 cut(s) 641
BmeRI GACNNNNNGTC 1 cut(s) 529
BmeT110I CYCGRG 1 cut(s) 837
BmgBI CACGTC 1 cut(s) 447
BmgT120I GGNCC 2 cut(s) 641, 1005
BmiI GGNNCC 2 cut(s) 322, 921
BmrFI CCNGG 3 cut(s) 318, 803, 1025
BmrI ACTGGG 2 cut(s) 87, 165
BmsI GCATC 1 cut(s) 611
BmuI ACTGGG 2 cut(s) 87, 165
BpiI GAAGAC 1 cut(s) 1274
BpmI CTGGAG 3 cut(s) 840, 844, 1272
Bpu14I TTCGAA 2 cut(s) 693, 1198
BpuMI CCSGG 2 cut(s) 318, 1025
Bsa29I ATCGAT 1 cut(s) 619
BsaJI CCNNGG 4 cut(s) 316, 387, 732, 759
BsaXI ACNNNNNCTCC 4 cut(s) 136, 166, 353, 383
Bsc4I CCNNNNNNNGG 3 cut(s) 245, 916, 1030
Bse118I RCCGGY 1 cut(s) 245
Bse1I ACTGG 5 cut(s) 93, 171, 542, 608, 870
Bse3DI GCAATG 1 cut(s) 1302
BseBI CCWGG 1 cut(s) 803
BseCI ATCGAT 1 cut(s) 619
BseDI CCNNGG 4 cut(s) 316, 387, 732, 759
BseGI GGATG 5 cut(s) 39, 123, 330, 1007, 1182
BseLI CCNNNNNNNGG 3 cut(s) 245, 916, 1030
BseMI GCAATG 1 cut(s) 1302
BseMII CTCAG 4 cut(s) 42, 552, 721, 954
BseNI ACTGG 5 cut(s) 93, 171, 542, 608, 870
BseRI GAGGAG 2 cut(s) 128, 721
BseSI GKGCMC 1 cut(s) 387
BseX3I CGGCCG 1 cut(s) 247
BseXI GCAGC 3 cut(s) 318, 871, 1321
Bsh1236I CGCG 1 cut(s) 1010
Bsh1285I CGRYCG 1 cut(s) 250
BshFI GGCC 7 cut(s) 46, 135, 194, 249, 438, 764, 1007
BshVI ATCGAT 1 cut(s) 619
BsiEI CGRYCG 1 cut(s) 250
BsiHKAI GWGCWC 1 cut(s) 844
BsiHKCI CYCGRG 1 cut(s) 837
BsiSI CCGG 4 cut(s) 43, 246, 318, 1024
BslI CCNNNNNNNGG 3 cut(s) 245, 916, 1030
BsmAI GTCTC 2 cut(s) 521, 1089
BsnI GGCC 7 cut(s) 46, 135, 194, 249, 438, 764, 1007
BsoBI CYCGRG 1 cut(s) 837
Bsp119I TTCGAA 2 cut(s) 693, 1198
Bsp1286I GDGCHC 3 cut(s) 387, 844, 1306
Bsp143I GATC 7 cut(s) 409, 616, 859, 966, 988, 1069, 1354
BspACI CCGC 6 cut(s) 114, 250, 422, 911, 1008, 1105
BspANI GGCC 7 cut(s) 46, 135, 194, 249, 438, 764, 1007
BspCNI CTCAG 4 cut(s) 41, 553, 720, 953
BspDI ATCGAT 1 cut(s) 619
BspFNI CGCG 1 cut(s) 1010
BspLI GGNNCC 2 cut(s) 322, 921
BspMAI CTGCAG 1 cut(s) 308
BspPI GGATC 1 cut(s) 624
BspT104I TTCGAA 2 cut(s) 693, 1198
BsrDI GCAATG 1 cut(s) 1302
BsrFI RCCGGY 1 cut(s) 245
BsrI ACTGG 5 cut(s) 93, 171, 542, 608, 870
BssAI RCCGGY 1 cut(s) 245
BssECI CCNNGG 4 cut(s) 316, 387, 732, 759
BssMI GATC 7 cut(s) 409, 616, 859, 966, 988, 1069, 1354
BssT1I CCWWGG 2 cut(s) 387, 759
Bst2UI CCWGG 1 cut(s) 803
Bst4CI ACNGT 2 cut(s) 515, 1093
Bst6I CTCTTC 1 cut(s) 146
BstAPI GCANNNNNTGC 1 cut(s) 812
BstBI TTCGAA 2 cut(s) 693, 1198
BstC8I GCNNGC 2 cut(s) 163, 247
BstDEI CTNAG 4 cut(s) 28, 561, 707, 940
BstF5I GGATG 5 cut(s) 39, 123, 330, 1007, 1182
BstFNI CGCG 1 cut(s) 1010
BstH2I RGCGCY 1 cut(s) 1196
BstHHI GCGC 3 cut(s) 223, 577, 1195
BstKTI GATC 7 cut(s) 412, 619, 862, 969, 991, 1072, 1357
BstMAI GTCTC 2 cut(s) 521, 1089
BstMBI GATC 7 cut(s) 409, 616, 859, 966, 988, 1069, 1354
BstMCI CGRYCG 1 cut(s) 250
BstMWI GCNNNNNNNGC 4 cut(s) 312, 812, 1301, 1343
BstNI CCWGG 1 cut(s) 803
BstNSI RCATGY 1 cut(s) 1159
BstSCI CCNGG 3 cut(s) 316, 801, 1023
BstSFI CTRYAG 2 cut(s) 304, 1341
BstSLI GKGCMC 1 cut(s) 387
BstUI CGCG 1 cut(s) 1010
BstV1I GCAGC 3 cut(s) 318, 871, 1321
BstV2I GAAGAC 1 cut(s) 1274
BstZI CGGCCG 1 cut(s) 247
Bsu15I ATCGAT 1 cut(s) 619
BsuRI GGCC 7 cut(s) 46, 135, 194, 249, 438, 764, 1007
BsuTUI ATCGAT 1 cut(s) 619
BtrI CACGTC 1 cut(s) 447
BtsCI GGATG 5 cut(s) 39, 123, 330, 1007, 1182
BtsI GCAGTG 1 cut(s) 449
BtsIMutI CAGTG 5 cut(s) 100, 449, 511, 615, 1089
Cac8I GCNNGC 2 cut(s) 163, 247
CfoI GCGC 3 cut(s) 223, 577, 1195
Cfr10I RCCGGY 1 cut(s) 245
Cfr13I GGNCC 2 cut(s) 641, 1005
ClaI ATCGAT 1 cut(s) 619
Csp6I GTAC 1 cut(s) 286
CspCI CAANNNNNGTGG 4 cut(s) 594, 629, 1204, 1239
CviAII CATG 6 cut(s) 53, 106, 335, 505, 638, 1156
CviQI GTAC 1 cut(s) 286
DdeI CTNAG 4 cut(s) 28, 561, 707, 940
DpnI GATC 7 cut(s) 411, 618, 861, 968, 990, 1071, 1356
DpnII GATC 7 cut(s) 409, 616, 859, 966, 988, 1069, 1354
DrdI GACNNNNNNGTC 1 cut(s) 422
DriI GACNNNNNGTC 1 cut(s) 529
DseDI GACNNNNNNGTC 1 cut(s) 422
EaeI YGGCCR 4 cut(s) 44, 192, 247, 436
EagI CGGCCG 1 cut(s) 247
Eam1104I CTCTTC 1 cut(s) 146
Eam1105I GACNNNNNGTC 1 cut(s) 529
EarI CTCTTC 1 cut(s) 146
EciI GGCGGA 1 cut(s) 103
EclXI CGGCCG 1 cut(s) 247
Eco130I CCWWGG 2 cut(s) 387, 759
Eco147I AGGCCT 1 cut(s) 135
Eco24I GRGCYC 1 cut(s) 1306
Eco47I GGWCC 1 cut(s) 641
Eco52I CGGCCG 1 cut(s) 247
Eco57I CTGAAG 3 cut(s) 177, 221, 651
Eco88I CYCGRG 1 cut(s) 837
EcoRII CCWGG 1 cut(s) 801
EcoT14I CCWWGG 2 cut(s) 387, 759
EcoT38I GRGCYC 1 cut(s) 1306
ErhI CCWWGG 2 cut(s) 387, 759
FaeI CATG 6 cut(s) 56, 109, 338, 508, 641, 1159
FalI AAGNNNNNCTT 4 cut(s) 62, 94, 1050, 1082
FatI CATG 6 cut(s) 52, 105, 334, 504, 637, 1155
FauI CCCGC 1 cut(s) 918
FbaI TGATCA 4 cut(s) 409, 988, 1069, 1354
FblI GTMKAC 2 cut(s) 294, 300
Fnu4HI GCNGC 5 cut(s) 250, 307, 885, 1008, 1335
FokI GGATG 5 cut(s) 26, 110, 317, 1014, 1189
FriOI GRGCYC 1 cut(s) 1306
Fsp4HI GCNGC 5 cut(s) 250, 307, 885, 1008, 1335
FspBI CTAG 4 cut(s) 12, 743, 783, 905
GlaI GCGC 3 cut(s) 222, 576, 1194
GluI GCNGC 5 cut(s) 250, 307, 885, 1008, 1335
GsuI CTGGAG 3 cut(s) 840, 844, 1272
HaeII RGCGCY 1 cut(s) 1196
HaeIII GGCC 7 cut(s) 46, 135, 194, 249, 438, 764, 1007
HapII CCGG 4 cut(s) 43, 246, 318, 1024
HhaI GCGC 3 cut(s) 223, 577, 1195
Hin1II CATG 6 cut(s) 56, 109, 338, 508, 641, 1159
Hin6I GCGC 3 cut(s) 221, 575, 1193
HinP1I GCGC 3 cut(s) 221, 575, 1193
HincII GTYRAC 2 cut(s) 301, 427
HindII GTYRAC 2 cut(s) 301, 427
HinfI GANTC 5 cut(s) 65, 690, 737, 1149, 1310
HpaII CCGG 4 cut(s) 43, 246, 318, 1024
HphI GGTGA 5 cut(s) 136, 250, 989, 1013, 1037
Hpy166II GTNNAC 8 cut(s) 229, 286, 295, 301, 427, 481, 1021, 1036
Hpy188I TCNGA 9 cut(s) 20, 31, 61, 361, 562, 710, 736, 772, 1315
Hpy8I GTNNAC 8 cut(s) 229, 286, 295, 301, 427, 481, 1021, 1036
Hpy99I CGWCG 3 cut(s) 302, 527, 1240
HpyAV CCTTC 4 cut(s) 412, 626, 670, 808
HpyCH4III ACNGT 2 cut(s) 515, 1093
HpyCH4IV ACGT 4 cut(s) 297, 446, 530, 844
HpyCH4V TGCA 2 cut(s) 306, 777
HpyF10VI GCNNNNNNNGC 4 cut(s) 312, 812, 1301, 1343
HpyF3I CTNAG 4 cut(s) 28, 561, 707, 940
HpySE526I ACGT 4 cut(s) 297, 446, 530, 844
Hsp92II CATG 6 cut(s) 56, 109, 338, 508, 641, 1159
HspAI GCGC 3 cut(s) 221, 575, 1193
KroI GCCGGC 1 cut(s) 245
KroNI GCCGGC 1 cut(s) 247
Ksp22I TGATCA 4 cut(s) 409, 988, 1069, 1354
Kzo9I GATC 7 cut(s) 409, 616, 859, 966, 988, 1069, 1354
LmnI GCTCC 3 cut(s) 320, 582, 925
Lsp1109I GCAGC 3 cut(s) 318, 871, 1321
LweI GCATC 1 cut(s) 611
MaeI CTAG 4 cut(s) 12, 743, 783, 905
MaeII ACGT 4 cut(s) 297, 446, 530, 844
MaeIII GTNAC 4 cut(s) 95, 256, 447, 466
MalI GATC 7 cut(s) 411, 618, 861, 968, 990, 1071, 1356
MboI GATC 7 cut(s) 409, 616, 859, 966, 988, 1069, 1354
MboII GAAGA 4 cut(s) 74, 133, 538, 1274
MhlI GDGCHC 3 cut(s) 387, 844, 1306
MlsI TGGCCA 2 cut(s) 194, 438
MluCI AATT 3 cut(s) 766, 925, 1169
MluNI TGGCCA 2 cut(s) 194, 438
MmeI TCCRAC 1 cut(s) 594
Mox20I TGGCCA 2 cut(s) 194, 438
MroNI GCCGGC 1 cut(s) 245
MroXI GAANNNNTTC 1 cut(s) 545
MscI TGGCCA 2 cut(s) 194, 438
MseI TTAA 2 cut(s) 1014, 1079
Msp20I TGGCCA 2 cut(s) 194, 438
MspI CCGG 4 cut(s) 43, 246, 318, 1024
MspR9I CCNGG 3 cut(s) 318, 803, 1025
MvaI CCWGG 1 cut(s) 803
MvnI CGCG 1 cut(s) 1010
MwoI GCNNNNNNNGC 4 cut(s) 312, 812, 1301, 1343
NaeI GCCGGC 1 cut(s) 247
NciI CCSGG 2 cut(s) 318, 1025
NdeII GATC 7 cut(s) 409, 616, 859, 966, 988, 1069, 1354
NgoMIV GCCGGC 1 cut(s) 245
NlaIII CATG 6 cut(s) 56, 109, 338, 508, 641, 1159
NlaIV GGNNCC 2 cut(s) 322, 921
NmeAIII GCCGAG 1 cut(s) 498
NmuCI GTSAC 4 cut(s) 95, 256, 447, 466
NspI RCATGY 1 cut(s) 1159
NspV TTCGAA 2 cut(s) 693, 1198
PaeR7I CTCGAG 1 cut(s) 837
PceI AGGCCT 1 cut(s) 135
PciI ACATGT 1 cut(s) 1155
PdiI GCCGGC 1 cut(s) 247
PdmI GAANNNNTTC 1 cut(s) 545
PfeI GAWTC 5 cut(s) 65, 690, 737, 1149, 1310
PkrI GCNGC 5 cut(s) 251, 308, 886, 1009, 1336
PscI ACATGT 1 cut(s) 1155
Psp6I CCWGG 1 cut(s) 801
PspGI CCWGG 1 cut(s) 801
PspN4I GGNNCC 2 cut(s) 322, 921
PspPI GGNCC 2 cut(s) 641, 1005
PspXI VCTCGAGB 1 cut(s) 837
PstI CTGCAG 1 cut(s) 308
RsaI GTAC 1 cut(s) 287
RsaNI GTAC 1 cut(s) 286
SalI GTCGAC 1 cut(s) 299
SaqAI TTAA 2 cut(s) 1014, 1079
SatI GCNGC 5 cut(s) 250, 307, 885, 1008, 1335
Sau3AI GATC 7 cut(s) 409, 616, 859, 966, 988, 1069, 1354
Sau96I GGNCC 2 cut(s) 641, 1005
ScrFI CCNGG 3 cut(s) 318, 803, 1025
SduI GDGCHC 3 cut(s) 387, 844, 1306
SfaNI GCATC 1 cut(s) 611
SfcI CTRYAG 2 cut(s) 304, 1341
Sfr274I CTCGAG 1 cut(s) 837
SfuI TTCGAA 2 cut(s) 693, 1198
SinI GGWCC 1 cut(s) 641
SlaI CTCGAG 1 cut(s) 837
SmlI CTYRAG 1 cut(s) 837
SmoI CTYRAG 1 cut(s) 837
Sse9I AATT 3 cut(s) 766, 925, 1169
SseBI AGGCCT 1 cut(s) 135
SsiI CCGC 6 cut(s) 114, 250, 422, 911, 1008, 1105
SspMI CTAG 4 cut(s) 12, 743, 783, 905
StuI AGGCCT 1 cut(s) 135
StyD4I CCNGG 3 cut(s) 316, 801, 1023
StyI CCWWGG 2 cut(s) 387, 759
TaaI ACNGT 2 cut(s) 515, 1093
TaiI ACGT 4 cut(s) 300, 449, 533, 847
TaqI TCGA 9 cut(s) 68, 180, 300, 619, 693, 838, 1113, 1152, 1198
TaqII GACCGA 1 cut(s) 485
TasI AATT 3 cut(s) 766, 925, 1169
TatI WGTACW 1 cut(s) 285
TauI GCSGC 2 cut(s) 252, 1010
TfiI GAWTC 5 cut(s) 65, 690, 737, 1149, 1310
Tru1I TTAA 2 cut(s) 1014, 1079
Tru9I TTAA 2 cut(s) 1014, 1079
TscAI CASTG 5 cut(s) 100, 456, 518, 615, 1096
TseFI GTSAC 4 cut(s) 95, 256, 447, 466
TseI GCWGC 3 cut(s) 306, 884, 1334
Tsp45I GTSAC 4 cut(s) 95, 256, 447, 466
TspDTI ATGAA 6 cut(s) 28, 319, 481, 521, 670, 1182
TspGWI ACGGA 1 cut(s) 540
TspRI CASTG 5 cut(s) 100, 456, 518, 615, 1096
VpaK11BI GGWCC 1 cut(s) 641
XapI RAATTY 1 cut(s) 1169
XceI RCATGY 1 cut(s) 1159
XcmI CCANNNNNNNNNTGG 1 cut(s) 877
XhoI CTCGAG 1 cut(s) 837
XmiI GTMKAC 2 cut(s) 294, 300
XmnI GAANNNNTTC 1 cut(s) 545
XspI CTAG 4 cut(s) 12, 743, 783, 905
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.