Rh6AG476200

acetyltransferase At3g50280-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0002329
Physical Location & Seq
Forward (+)
65799194 .. 65800876
1683 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG476200.1

Sequence Viewer

Length: 1368 bp
ATGGAGTCCCCAAATGTCAAACACATCTCAGAATGCTTTATCCAACCTCACAATGCTTCGAAAGAATCAAAGAAGCGCTTTTATTTGACCCCCACAGACCTCGCCATGCTCTCCGAGCACTATATCCAGAAAGGTCTCCTCTTCACCAAACCTCCAAAAGCCAACAACCCTAATTTTCTTGACACCCTTTTGGCGAAACTGAAGTACTCTCTTTCCCTCGCACTCGTTCACTTCTACCCGCTAGCGGGTCGCCTTGTGACCAAGAAAGAACAAGACCCTCATCTCTACTTGGTCTATGTGGATTGCAGCAATAGCCCTGGAGCTAAATTCATCCATGCTTCTCTTGACATGTCCATCTCGGACATTCTTTCCCCAACTGATGTGCCCTTGGTGGTTCAGTCCTTGTTTGATCACGACAGGGCGGTCAACCACGACGGACACACCACGTCGTTGTTGACGGCTCAAGTCACGGAATTGGTGGACGGCGTTTTCATCGGGTTATCAATGAACCATTGTCTCGGTGACGGAACATCTTACTGGAATTTCTTCAACACTTGGTCTGCAATTTTCCAAGCACAAGAAAACAATGTCACTCTTTCCAAGATCTCCAATCCACCAGTGTTGGATCGGTGGTTTCCAGAAGGTCATGGTCCGATTATCAGCCTTCCTTTCACAGACCCAAGTGAGTTCATTGACAGAGTCGAAGCACCAAAACTCAGAGAGAGAATGTTTCATTTCTCCGCAGAATCCCTAGCCAAACTCAAAGCCATGGCCAATTCAGAGAACGAGACCAGCAACATCTCCACCTTCCAGGCCTTGTCTGCGCTTCTCTGGAGGACTATAACTCGAGCGCGTCTTCTGCCACCAGATCAAGAAACCAGTTGCAGATTAGCTGCCAATAACAGAGCAAGATTGGACCCGCCATTGCCTCCGAATTACTTTGGCAACGCCATTTATCCGGTCAAATCAGAACTGATCAATGCTGGTGAGTTGCTTGATCATGGGCTTGGATGGGCCGCGTGGAAATTGCACCAGGCTGTGGTCAACCTCAATGACCAAGTACTAAAACGGTATCTTGATTACTGGTTAAAGTCTCCGACTGTGTTTACTATGCGATATTTCGATCCATTTAGTGTGATGATGGGGAGTAGTCCGAGATTCGACATGTATAAAAATGAATTTGGGATGGGAAAAGCTGTGGCTCTACGAAGTGGGTATGCCAACAAGTTTAGTGGCAAAGTGTCGTCGTTTCAAGGGCGCGAAGCAGGAAGCATTGACTTGGAGGTGTGTCTTCTTCCAGAGGTAATGAGGGCTCTTGAATCTGATGATGAGTTTATGGAAGCTGCCTCTGTACCAAGTCATGAGTAG

Protein Analysis

455

Amino Acids

51.13

Weight (kDa)

6.12

Isoelectric Point (pI)

39.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 6 - 446 1e-71 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 422
AccB7I CCANNNNNTGG 1 cut(s) 1039
AccII CGCG 3 cut(s) 853, 1019, 1260
AciI CCGC 6 cut(s) 239, 245, 422, 741, 920, 1017
AclWI GGATC 2 cut(s) 633, 1118
AcoI YGGCCR 1 cut(s) 771
AcsI RAATTY 3 cut(s) 326, 541, 1178
AcuI CTGAAG 1 cut(s) 221
AfaI GTAC 3 cut(s) 206, 1062, 1353
AfeI AGCGCT 1 cut(s) 77
AfiI CCNNNNNNNGG 3 cut(s) 244, 245, 1039
AflIII ACRYGT 2 cut(s) 348, 1164
AgsI TTSAA 3 cut(s) 550, 1253, 1319
AjiI CACGTC 1 cut(s) 447
AjnI CCWGG 3 cut(s) 316, 810, 1032
AluBI AGCT 4 cut(s) 323, 893, 1196, 1343
AluI AGCT 4 cut(s) 323, 893, 1196, 1343
Alw21I GWGCWC 1 cut(s) 120
Alw26I GTCTC 4 cut(s) 140, 521, 782, 1098
AlwI GGATC 2 cut(s) 633, 1118
Ama87I CYCGRG 1 cut(s) 846
Aor51HI AGCGCT 1 cut(s) 77
AoxI GGCC 3 cut(s) 771, 813, 1014
ApeKI GCWGC 3 cut(s) 306, 893, 1343
ApoI RAATTY 3 cut(s) 326, 541, 1178
Asp700I GAANNNNTTC 1 cut(s) 545
AspLEI GCGC 4 cut(s) 78, 826, 853, 1260
AspS9I GGNCC 3 cut(s) 650, 916, 1014
AsuHPI GGTGA 3 cut(s) 136, 533, 998
AsuII TTCGAA 1 cut(s) 59
AsuNHI GCTAGC 1 cut(s) 241
AvaI CYCGRG 1 cut(s) 846
AvaII GGWCC 2 cut(s) 650, 916
BaeGI GKGCMC 1 cut(s) 387
BalI TGGCCA 1 cut(s) 773
BanII GRGCYC 1 cut(s) 1315
BbsI GAAGAC 2 cut(s) 848, 1283
Bbv12I GWGCWC 1 cut(s) 120
BbvI GCAGC 3 cut(s) 318, 880, 1330
BccI CCATC 4 cut(s) 362, 1005, 1135, 1180
BceAI ACGGC 2 cut(s) 474, 499
BciT130I CCWGG 3 cut(s) 318, 812, 1034
BclI TGATCA 3 cut(s) 409, 975, 997
BcoDI GTCTC 4 cut(s) 140, 521, 782, 1098
BfaI CTAG 2 cut(s) 242, 752
BfoI RGCGCY 1 cut(s) 79
BglII AGATCT 1 cut(s) 603
BisI GCNGC 4 cut(s) 307, 894, 1017, 1344
BlsI GCNGC 4 cut(s) 308, 895, 1018, 1345
BmcAI AGTACT 2 cut(s) 206, 1062
Bme1390I CCNGG 3 cut(s) 318, 812, 1034
Bme18I GGWCC 2 cut(s) 650, 916
BmeT110I CYCGRG 1 cut(s) 846
BmgBI CACGTC 1 cut(s) 447
BmgT120I GGNCC 3 cut(s) 650, 916, 1014
BmiI GGNNCC 1 cut(s) 918
BmrFI CCNGG 3 cut(s) 318, 812, 1034
BmtI GCTAGC 1 cut(s) 245
BpiI GAAGAC 2 cut(s) 848, 1283
BpmI CTGGAG 2 cut(s) 339, 853
Bpu14I TTCGAA 1 cut(s) 59
BpuEI CTTGAG 1 cut(s) 447
BsaI GGTCTC 2 cut(s) 140, 782
BsaJI CCNNGG 3 cut(s) 316, 387, 768
BsaWI WCCGGW 1 cut(s) 958
BsaXI ACNNNNNCTCC 2 cut(s) 136, 166
Bsc4I CCNNNNNNNGG 3 cut(s) 244, 245, 1039
Bse1I ACTGG 4 cut(s) 542, 617, 879, 1088
Bse3DI GCAATG 1 cut(s) 923
BseBI CCWGG 3 cut(s) 318, 812, 1034
BseDI CCNNGG 3 cut(s) 316, 387, 768
BseGI GGATG 3 cut(s) 330, 1016, 1191
BseLI CCNNNNNNNGG 3 cut(s) 244, 245, 1039
BseMI GCAATG 1 cut(s) 923
BseMII CTCAG 2 cut(s) 42, 730
BseNI ACTGG 4 cut(s) 542, 617, 879, 1088
BseRI GAGGAG 1 cut(s) 128
BseSI GKGCMC 1 cut(s) 387
BseXI GCAGC 3 cut(s) 318, 880, 1330
Bsh1236I CGCG 3 cut(s) 853, 1019, 1260
BshFI GGCC 3 cut(s) 773, 815, 1016
BsiHKAI GWGCWC 1 cut(s) 120
BsiHKCI CYCGRG 1 cut(s) 846
BsiSI CCGG 1 cut(s) 959
BslI CCNNNNNNNGG 3 cut(s) 244, 245, 1039
BsmAI GTCTC 4 cut(s) 140, 521, 782, 1098
BsmI GAATGC 1 cut(s) 38
BsnI GGCC 3 cut(s) 773, 815, 1016
Bso31I GGTCTC 2 cut(s) 140, 782
BsoBI CYCGRG 1 cut(s) 846
Bsp119I TTCGAA 1 cut(s) 59
Bsp1286I GDGCHC 3 cut(s) 120, 387, 1315
Bsp143I GATC 7 cut(s) 409, 603, 625, 868, 975, 997, 1123
Bsp19I CCATGG 1 cut(s) 768
BspACI CCGC 6 cut(s) 239, 245, 422, 741, 920, 1017
BspANI GGCC 3 cut(s) 773, 815, 1016
BspCNI CTCAG 2 cut(s) 41, 729
BspFNI CGCG 3 cut(s) 853, 1019, 1260
BspHI TCATGA 1 cut(s) 1360
BspLI GGNNCC 1 cut(s) 918
BspOI GCTAGC 1 cut(s) 245
BspPI GGATC 2 cut(s) 633, 1118
BspT104I TTCGAA 1 cut(s) 59
BspTNI GGTCTC 2 cut(s) 140, 782
BsrDI GCAATG 1 cut(s) 923
BsrI ACTGG 4 cut(s) 542, 617, 879, 1088
BssECI CCNNGG 3 cut(s) 316, 387, 768
BssMI GATC 7 cut(s) 409, 603, 625, 868, 975, 997, 1123
BssT1I CCWWGG 2 cut(s) 387, 768
Bst2UI CCWGG 3 cut(s) 318, 812, 1034
Bst4CI ACNGT 2 cut(s) 1071, 1102
Bst6I CTCTTC 1 cut(s) 146
BstBI TTCGAA 1 cut(s) 59
BstC8I GCNNGC 1 cut(s) 243
BstDEI CTNAG 2 cut(s) 28, 716
BstDSI CCRYGG 1 cut(s) 768
BstF5I GGATG 3 cut(s) 330, 1016, 1191
BstFNI CGCG 3 cut(s) 853, 1019, 1260
BstH2I RGCGCY 1 cut(s) 79
BstHHI GCGC 4 cut(s) 78, 826, 853, 1260
BstKTI GATC 7 cut(s) 412, 606, 628, 871, 978, 1000, 1126
BstMAI GTCTC 4 cut(s) 140, 521, 782, 1098
BstMBI GATC 7 cut(s) 409, 603, 625, 868, 975, 997, 1123
BstMWI GCNNNNNNNGC 4 cut(s) 115, 312, 821, 859
BstNI CCWGG 3 cut(s) 318, 812, 1034
BstNSI RCATGY 2 cut(s) 352, 1168
BstSCI CCNGG 3 cut(s) 316, 810, 1032
BstSLI GKGCMC 1 cut(s) 387
BstUI CGCG 3 cut(s) 853, 1019, 1260
BstV1I GCAGC 3 cut(s) 318, 880, 1330
BstV2I GAAGAC 2 cut(s) 848, 1283
BstX2I RGATCY 1 cut(s) 603
BstYI RGATCY 1 cut(s) 603
BsuRI GGCC 3 cut(s) 773, 815, 1016
BtgI CCRYGG 1 cut(s) 768
BtrI CACGTC 1 cut(s) 447
BtsCI GGATG 3 cut(s) 330, 1016, 1191
BtsIMutI CAGTG 1 cut(s) 624
Cac8I GCNNGC 1 cut(s) 243
CciI TCATGA 1 cut(s) 1360
CfoI GCGC 4 cut(s) 78, 826, 853, 1260
Cfr13I GGNCC 3 cut(s) 650, 916, 1014
CseI GACGC 1 cut(s) 842
Csp6I GTAC 3 cut(s) 205, 1061, 1352
CspCI CAANNNNNGTGG 4 cut(s) 603, 638, 1213, 1248
CviAII CATG 8 cut(s) 106, 335, 349, 647, 769, 1001, 1165, 1361
CviQI GTAC 3 cut(s) 205, 1061, 1352
DdeI CTNAG 2 cut(s) 28, 716
DpnI GATC 7 cut(s) 411, 605, 627, 870, 977, 999, 1125
DpnII GATC 7 cut(s) 409, 603, 625, 868, 975, 997, 1123
DrdI GACNNNNNNGTC 1 cut(s) 422
DseDI GACNNNNNNGTC 1 cut(s) 422
EaeI YGGCCR 1 cut(s) 771
Eam1104I CTCTTC 1 cut(s) 146
EarI CTCTTC 1 cut(s) 146
Eco130I CCWWGG 2 cut(s) 387, 768
Eco147I AGGCCT 1 cut(s) 815
Eco24I GRGCYC 1 cut(s) 1315
Eco31I GGTCTC 2 cut(s) 140, 782
Eco47I GGWCC 2 cut(s) 650, 916
Eco47III AGCGCT 1 cut(s) 77
Eco57I CTGAAG 1 cut(s) 221
Eco88I CYCGRG 1 cut(s) 846
EcoRII CCWGG 3 cut(s) 316, 810, 1032
EcoT14I CCWWGG 2 cut(s) 387, 768
EcoT38I GRGCYC 1 cut(s) 1315
ErhI CCWWGG 2 cut(s) 387, 768
FaeI CATG 8 cut(s) 109, 338, 352, 650, 772, 1004, 1168, 1364
FalI AAGNNNNNCTT 2 cut(s) 62, 94
FatI CATG 8 cut(s) 105, 334, 348, 646, 768, 1000, 1164, 1360
FauI CCCGC 3 cut(s) 238, 246, 927
FbaI TGATCA 3 cut(s) 409, 975, 997
Fnu4HI GCNGC 4 cut(s) 307, 894, 1017, 1344
FokI GGATG 3 cut(s) 317, 1023, 1198
FriOI GRGCYC 1 cut(s) 1315
Fsp4HI GCNGC 4 cut(s) 307, 894, 1017, 1344
FspBI CTAG 2 cut(s) 242, 752
GlaI GCGC 4 cut(s) 77, 825, 852, 1259
GluI GCNGC 4 cut(s) 307, 894, 1017, 1344
GsuI CTGGAG 2 cut(s) 339, 853
HaeII RGCGCY 1 cut(s) 79
HaeIII GGCC 3 cut(s) 773, 815, 1016
HapII CCGG 1 cut(s) 959
HgaI GACGC 1 cut(s) 842
HhaI GCGC 4 cut(s) 78, 826, 853, 1260
Hin1II CATG 8 cut(s) 109, 338, 352, 650, 772, 1004, 1168, 1364
Hin6I GCGC 4 cut(s) 76, 824, 851, 1258
HinP1I GCGC 4 cut(s) 76, 824, 851, 1258
HincII GTYRAC 3 cut(s) 427, 456, 1045
HindII GTYRAC 3 cut(s) 427, 456, 1045
HinfI GANTC 6 cut(s) 5, 65, 699, 746, 1158, 1319
HpaII CCGG 1 cut(s) 959
HphI GGTGA 3 cut(s) 136, 533, 998
Hpy166II GTNNAC 6 cut(s) 229, 427, 456, 481, 1045, 1107
Hpy8I GTNNAC 6 cut(s) 229, 427, 456, 481, 1045, 1107
Hpy99I CGWCG 3 cut(s) 437, 451, 1249
HpyAV CCTTC 3 cut(s) 635, 674, 817
HpyCH4III ACNGT 2 cut(s) 1071, 1102
HpyCH4IV ACGT 1 cut(s) 446
HpyCH4V TGCA 4 cut(s) 306, 563, 885, 1030
HpyF10VI GCNNNNNNNGC 4 cut(s) 115, 312, 821, 859
HpyF3I CTNAG 2 cut(s) 28, 716
HpySE526I ACGT 1 cut(s) 446
Hsp92II CATG 8 cut(s) 109, 338, 352, 650, 772, 1004, 1168, 1364
HspAI GCGC 4 cut(s) 76, 824, 851, 1258
Ksp22I TGATCA 3 cut(s) 409, 975, 997
Kzo9I GATC 7 cut(s) 409, 603, 625, 868, 975, 997, 1123
LmnI GCTCC 1 cut(s) 320
Lsp1109I GCAGC 3 cut(s) 318, 880, 1330
MaeI CTAG 2 cut(s) 242, 752
MaeII ACGT 1 cut(s) 446
MaeIII GTNAC 4 cut(s) 256, 466, 521, 589
MalI GATC 7 cut(s) 411, 605, 627, 870, 977, 999, 1125
MboI GATC 7 cut(s) 409, 603, 625, 868, 975, 997, 1123
MboII GAAGA 5 cut(s) 133, 538, 848, 1283, 1286
MflI RGATCY 1 cut(s) 603
MhlI GDGCHC 3 cut(s) 120, 387, 1315
MlsI TGGCCA 1 cut(s) 773
MluCI AATT 9 cut(s) 172, 326, 473, 541, 564, 775, 934, 1025, 1178
MluNI TGGCCA 1 cut(s) 773
MlyI GAGTC 2 cut(s) 14, 708
MmeI TCCRAC 3 cut(s) 67, 603, 1121
Mox20I TGGCCA 1 cut(s) 773
MroXI GAANNNNTTC 1 cut(s) 545
MscI TGGCCA 1 cut(s) 773
MseI TTAA 1 cut(s) 1088
Msp20I TGGCCA 1 cut(s) 773
MspI CCGG 1 cut(s) 959
MspR9I CCNGG 3 cut(s) 318, 812, 1034
Mva1269I GAATGC 1 cut(s) 38
MvaI CCWGG 3 cut(s) 318, 812, 1034
MvnI CGCG 3 cut(s) 853, 1019, 1260
MwoI GCNNNNNNNGC 4 cut(s) 115, 312, 821, 859
NcoI CCATGG 1 cut(s) 768
NdeII GATC 7 cut(s) 409, 603, 625, 868, 975, 997, 1123
NheI GCTAGC 1 cut(s) 241
NlaIII CATG 8 cut(s) 109, 338, 352, 650, 772, 1004, 1168, 1364
NlaIV GGNNCC 1 cut(s) 918
NmuCI GTSAC 4 cut(s) 256, 466, 521, 589
NspI RCATGY 2 cut(s) 352, 1168
NspV TTCGAA 1 cut(s) 59
PaeR7I CTCGAG 1 cut(s) 846
PagI TCATGA 1 cut(s) 1360
PceI AGGCCT 1 cut(s) 815
PciI ACATGT 2 cut(s) 348, 1164
PctI GAATGC 1 cut(s) 38
PdmI GAANNNNTTC 1 cut(s) 545
PfeI GAWTC 4 cut(s) 65, 746, 1158, 1319
PflFI GACNNNGTC 1 cut(s) 698
PflMI CCANNNNNTGG 1 cut(s) 1039
PkrI GCNGC 4 cut(s) 308, 895, 1018, 1345
PleI GAGTC 2 cut(s) 13, 707
PpsI GAGTC 2 cut(s) 13, 707
PscI ACATGT 2 cut(s) 348, 1164
Psp6I CCWGG 3 cut(s) 316, 810, 1032
PspGI CCWGG 3 cut(s) 316, 810, 1032
PspN4I GGNNCC 1 cut(s) 918
PspPI GGNCC 3 cut(s) 650, 916, 1014
PspXI VCTCGAGB 1 cut(s) 846
PsuI RGATCY 1 cut(s) 603
PsyI GACNNNGTC 1 cut(s) 698
RsaI GTAC 3 cut(s) 206, 1062, 1353
RsaNI GTAC 3 cut(s) 205, 1061, 1352
SaqAI TTAA 1 cut(s) 1088
SatI GCNGC 4 cut(s) 307, 894, 1017, 1344
Sau3AI GATC 7 cut(s) 409, 603, 625, 868, 975, 997, 1123
Sau96I GGNCC 3 cut(s) 650, 916, 1014
ScaI AGTACT 2 cut(s) 206, 1062
SchI GAGTC 2 cut(s) 14, 708
ScrFI CCNGG 3 cut(s) 318, 812, 1034
SduI GDGCHC 3 cut(s) 120, 387, 1315
Sfr274I CTCGAG 1 cut(s) 846
SfuI TTCGAA 1 cut(s) 59
SinI GGWCC 2 cut(s) 650, 916
SlaI CTCGAG 1 cut(s) 846
SmlI CTYRAG 2 cut(s) 462, 846
SmoI CTYRAG 2 cut(s) 462, 846
Sse9I AATT 9 cut(s) 172, 326, 473, 541, 564, 775, 934, 1025, 1178
SseBI AGGCCT 1 cut(s) 815
SsiI CCGC 6 cut(s) 239, 245, 422, 741, 920, 1017
SspMI CTAG 2 cut(s) 242, 752
StuI AGGCCT 1 cut(s) 815
StyD4I CCNGG 3 cut(s) 316, 810, 1032
StyI CCWWGG 2 cut(s) 387, 768
TaaI ACNGT 2 cut(s) 1071, 1102
TaiI ACGT 1 cut(s) 449
TaqI TCGA 5 cut(s) 59, 702, 847, 1122, 1161
TasI AATT 9 cut(s) 172, 326, 473, 541, 564, 775, 934, 1025, 1178
TatI WGTACW 2 cut(s) 204, 1060
TauI GCSGC 1 cut(s) 1019
TfiI GAWTC 4 cut(s) 65, 746, 1158, 1319
Tru1I TTAA 1 cut(s) 1088
Tru9I TTAA 1 cut(s) 1088
TscAI CASTG 1 cut(s) 624
TseFI GTSAC 4 cut(s) 256, 466, 521, 589
TseI GCWGC 3 cut(s) 306, 893, 1343
Tsp45I GTSAC 4 cut(s) 256, 466, 521, 589
TspDTI ATGAA 6 cut(s) 319, 481, 521, 679, 722, 1191
TspGWI ACGGA 3 cut(s) 450, 485, 540
TspRI CASTG 1 cut(s) 624
Tth111I GACNNNGTC 1 cut(s) 698
Van91I CCANNNNNTGG 1 cut(s) 1039
VpaK11BI GGWCC 2 cut(s) 650, 916
XapI RAATTY 3 cut(s) 326, 541, 1178
XceI RCATGY 2 cut(s) 352, 1168
XhoI CTCGAG 1 cut(s) 846
XmnI GAANNNNTTC 1 cut(s) 545
XspI CTAG 2 cut(s) 242, 752
ZrmI AGTACT 2 cut(s) 206, 1062
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.