Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011796.1

Orthogroup ID

OG0002329

Physical Location & Seq

Genomic Coordinates Forward (+)

2631 .. 3272

Gene Structure 642 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011796.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

atgtttcatttctccgcagaatccctagccaaactcaaagccaaggccaattcagagaacgagaccagcaacatctccaccttccaggcattgtctgcgcttctctggaggactataactcgagcgcgtcttctgccaccagatcaagaaaccagttgcagattggctgccaataacagagcaagattggacccaccattgcctccgaattactttggcaacgccatttatccgatcaaatcagaactgatcaatgctggtgagttgcttgatcatgggcttggatgggccgcgtggaaattgcaccaggctgtggttaacctcaatgaccaagtactaaaacggtatcttgattactggttaaagtctccgactgtgtttactatgcgatatttcgatccatttagtgtgatgatggggagtagtccgagattcgacatgtataaaaatgaatttgggctgggaaaagctgtggctctacgaagtgggtatgccaacaagtttagtggcaaagtgtcgtcgtttcaagggcgcgaagcaggaagcattgacttggaggtgtgtcttcttccagaggtaatgagggctcttgaatctgatgatgagtttatggaagctgcctctgtaccaagttataagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010143 GO:0016043 GO:0030154 GO:0032502 GO:0032989 GO:0043170 GO:0044424 GO:0044464 GO:0048468 GO:0048856 GO:0048869 GO:0051179 GO:0071704 GO:0071840 GO:0090558 GO:0090626 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transferase

Protein Analysis

213

Amino Acids

23.93

Weight (kDa)

7.74

Isoelectric Point (pI)

36.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002329)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07850 AT5G42830
fragaria_vesca	FvH4_2g34050 FvH4_2g34060 FvH4_2g34061
malus_domestica	MD08G1096500.v1.1 MD08G1096600.v1.1 MD15G1079200.v1.1 MD15G1079300.v1.1
prunus_persica	Prupe.1G432300_v2.0.a1 Prupe.1G432400_v2.0.a1 Prupe.1G432500_v2.0.a1
pyrus_communis	pycom08g07870 pycom15g07380
rosa_chinensis	RchiOBHm_Chr6g0308291 RchiOBHm_Chr6g0308301 RchiOBHm_Chr6g0308421
rosa_laevigata	RLG00000010650
rosa_multiflora	Rmu_co8463877.1_g000001 Rmu_sc0003583.1_g000001 Rmu_sc0005523.1_g000006 Rmu_sc0011796.1_g000002 Rmu_ssc0000355.1_g000011
rosa_roxburghii	Rroxscaffold_7G00160150 Rroxscaffold_7G00160240 Rroxscaffold_7G00160280
rosa_rugosa	Rorug06G0366000 Rorug06G0366500
rosa_samantha	Rh6AG474900 Rh6AG475000 Rh6AG476200 Rh6BG485500 Rh6BG485600 Rh6BG485700 Rh6BG486400 Rh6CG490600 Rh6CG490800 Rh6CG490900 Rh6CG491600 Rh6DG477200
rosa_wichuraiana	Rw6G041430 Rw6G041500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	636
AccB7I	CCANNNNNTGG	1 cut(s)	313
AccII	CGCG	3 cut(s)	127, 293, 534
AciI	CCGC	2 cut(s)	15, 291
AclWI	GGATC	1 cut(s)	392
AcsI	RAATTY	1 cut(s)	452
AfaI	GTAC	2 cut(s)	336, 627
AfiI	CCNNNNNNNGG	1 cut(s)	313
AflIII	ACRYGT	1 cut(s)	438
AgsI	TTSAA	2 cut(s)	527, 593
AjnI	CCWGG	2 cut(s)	84, 306
AluBI	AGCT	2 cut(s)	470, 617
AluI	AGCT	2 cut(s)	470, 617
Alw26I	GTCTC	2 cut(s)	56, 372
AlwI	GGATC	1 cut(s)	392
Ama87I	CYCGRG	1 cut(s)	120
AoxI	GGCC	2 cut(s)	45, 288
ApeKI	GCWGC	2 cut(s)	167, 617
ApoI	RAATTY	1 cut(s)	452
AspLEI	GCGC	3 cut(s)	100, 127, 534
AspS9I	GGNCC	2 cut(s)	190, 288
AsuHPI	GGTGA	1 cut(s)	272
AvaI	CYCGRG	1 cut(s)	120
AvaII	GGWCC	1 cut(s)	190
BanII	GRGCYC	1 cut(s)	589
BbsI	GAAGAC	2 cut(s)	122, 557
BbvI	GCAGC	2 cut(s)	154, 604
BccI	CCATC	2 cut(s)	279, 409
BciT130I	CCWGG	2 cut(s)	86, 308
BclI	TGATCA	2 cut(s)	249, 271
BcoDI	GTCTC	2 cut(s)	56, 372
BfaI	CTAG	1 cut(s)	26
BisI	GCNGC	3 cut(s)	168, 291, 618
BlsI	GCNGC	3 cut(s)	169, 292, 619
BmcAI	AGTACT	1 cut(s)	336
Bme1390I	CCNGG	2 cut(s)	86, 308
Bme18I	GGWCC	1 cut(s)	190
BmeT110I	CYCGRG	1 cut(s)	120
BmgT120I	GGNCC	2 cut(s)	190, 288
BmiI	GGNNCC	1 cut(s)	192
BmrFI	CCNGG	2 cut(s)	86, 308
BpiI	GAAGAC	2 cut(s)	122, 557
BpmI	CTGGAG	1 cut(s)	127
BsaI	GGTCTC	1 cut(s)	56
BsaJI	CCNNGG	1 cut(s)	42
Bsc4I	CCNNNNNNNGG	1 cut(s)	313
Bse1I	ACTGG	2 cut(s)	153, 362
Bse3DI	GCAATG	1 cut(s)	197
BseBI	CCWGG	2 cut(s)	86, 308
BseDI	CCNNGG	1 cut(s)	42
BseGI	GGATG	1 cut(s)	290
BseLI	CCNNNNNNNGG	1 cut(s)	313
BseMI	GCAATG	1 cut(s)	197
BseNI	ACTGG	2 cut(s)	153, 362
BseXI	GCAGC	2 cut(s)	154, 604
BseYI	CCCAGC	1 cut(s)	460
Bsh1236I	CGCG	3 cut(s)	127, 293, 534
BshFI	GGCC	2 cut(s)	47, 290
BsiHKCI	CYCGRG	1 cut(s)	120
BslI	CCNNNNNNNGG	1 cut(s)	313
BsmAI	GTCTC	2 cut(s)	56, 372
BsnI	GGCC	2 cut(s)	47, 290
Bso31I	GGTCTC	1 cut(s)	56
BsoBI	CYCGRG	1 cut(s)	120
Bsp1286I	GDGCHC	1 cut(s)	589
Bsp143I	GATC	5 cut(s)	142, 234, 249, 271, 397
BspACI	CCGC	2 cut(s)	15, 291
BspANI	GGCC	2 cut(s)	47, 290
BspFNI	CGCG	3 cut(s)	127, 293, 534
BspLI	GGNNCC	1 cut(s)	192
BspPI	GGATC	1 cut(s)	392
BspTNI	GGTCTC	1 cut(s)	56
BsrDI	GCAATG	1 cut(s)	197
BsrI	ACTGG	2 cut(s)	153, 362
BssECI	CCNNGG	1 cut(s)	42
BssMI	GATC	5 cut(s)	142, 234, 249, 271, 397
BssT1I	CCWWGG	1 cut(s)	42
Bst2UI	CCWGG	2 cut(s)	86, 308
Bst4CI	ACNGT	2 cut(s)	345, 376
BstAPI	GCANNNNNTGC	1 cut(s)	95
BstF5I	GGATG	1 cut(s)	290
BstFNI	CGCG	3 cut(s)	127, 293, 534
BstHHI	GCGC	3 cut(s)	100, 127, 534
BstKTI	GATC	5 cut(s)	145, 237, 252, 274, 400
BstMAI	GTCTC	2 cut(s)	56, 372
BstMBI	GATC	5 cut(s)	142, 234, 249, 271, 397
BstMWI	GCNNNNNNNGC	2 cut(s)	95, 133
BstNI	CCWGG	2 cut(s)	86, 308
BstNSI	RCATGY	1 cut(s)	442
BstSCI	CCNGG	2 cut(s)	84, 306
BstUI	CGCG	3 cut(s)	127, 293, 534
BstV1I	GCAGC	2 cut(s)	154, 604
BstV2I	GAAGAC	2 cut(s)	122, 557
BsuRI	GGCC	2 cut(s)	47, 290
BtsCI	GGATG	1 cut(s)	290
CfoI	GCGC	3 cut(s)	100, 127, 534
Cfr13I	GGNCC	2 cut(s)	190, 288
CseI	GACGC	1 cut(s)	116
Csp6I	GTAC	2 cut(s)	335, 626
CspCI	CAANNNNNGTGG	2 cut(s)	487, 522
CviAII	CATG	2 cut(s)	275, 439
CviQI	GTAC	2 cut(s)	335, 626
DpnI	GATC	5 cut(s)	144, 236, 251, 273, 399
DpnII	GATC	5 cut(s)	142, 234, 249, 271, 397
Eco130I	CCWWGG	1 cut(s)	42
Eco24I	GRGCYC	1 cut(s)	589
Eco31I	GGTCTC	1 cut(s)	56
Eco47I	GGWCC	1 cut(s)	190
Eco88I	CYCGRG	1 cut(s)	120
EcoRII	CCWGG	2 cut(s)	84, 306
EcoT14I	CCWWGG	1 cut(s)	42
EcoT38I	GRGCYC	1 cut(s)	589
ErhI	CCWWGG	1 cut(s)	42
FaeI	CATG	2 cut(s)	278, 442
FaiI	YATR	8 cut(s)	116, 276, 386, 440, 444, 492, 611, 636
FatI	CATG	2 cut(s)	274, 438
FbaI	TGATCA	2 cut(s)	249, 271
Fnu4HI	GCNGC	3 cut(s)	168, 291, 618
FokI	GGATG	1 cut(s)	297
FriOI	GRGCYC	1 cut(s)	589
Fsp4HI	GCNGC	3 cut(s)	168, 291, 618
FspBI	CTAG	1 cut(s)	26
GlaI	GCGC	3 cut(s)	99, 126, 533
GluI	GCNGC	3 cut(s)	168, 291, 618
GsaI	CCCAGC	1 cut(s)	464
GsuI	CTGGAG	1 cut(s)	127
HaeIII	GGCC	2 cut(s)	47, 290
HgaI	GACGC	1 cut(s)	116
HhaI	GCGC	3 cut(s)	100, 127, 534
Hin1II	CATG	2 cut(s)	278, 442
Hin6I	GCGC	3 cut(s)	98, 125, 532
HinP1I	GCGC	3 cut(s)	98, 125, 532
HincII	GTYRAC	1 cut(s)	319
HindII	GTYRAC	1 cut(s)	319
HinfI	GANTC	3 cut(s)	20, 432, 593
HpaI	GTTAAC	1 cut(s)	319
HphI	GGTGA	1 cut(s)	272
Hpy166II	GTNNAC	2 cut(s)	319, 381
Hpy188I	TCNGA	7 cut(s)	55, 207, 234, 244, 372, 429, 598
Hpy188III	TCNNGA	5 cut(s)	106, 146, 350, 572, 590
Hpy8I	GTNNAC	2 cut(s)	319, 381
Hpy99I	CGWCG	1 cut(s)	523
HpyAV	CCTTC	1 cut(s)	91
HpyCH4III	ACNGT	2 cut(s)	345, 376
HpyCH4V	TGCA	2 cut(s)	159, 304
HpyF10VI	GCNNNNNNNGC	2 cut(s)	95, 133
Hsp92II	CATG	2 cut(s)	278, 442
HspAI	GCGC	3 cut(s)	98, 125, 532
Ksp22I	TGATCA	2 cut(s)	249, 271
KspAI	GTTAAC	1 cut(s)	319
Kzo9I	GATC	5 cut(s)	142, 234, 249, 271, 397
Lsp1109I	GCAGC	2 cut(s)	154, 604
MaeI	CTAG	1 cut(s)	26
MalI	GATC	5 cut(s)	144, 236, 251, 273, 399
MboI	GATC	5 cut(s)	142, 234, 249, 271, 397
MboII	GAAGA	3 cut(s)	122, 557, 560
MhlI	GDGCHC	1 cut(s)	589
MluCI	AATT	4 cut(s)	49, 208, 299, 452
MmeI	TCCRAC	1 cut(s)	395
MnlI	CCTC	7 cut(s)	102, 213, 332, 550, 568, 576, 631
MseI	TTAA	2 cut(s)	318, 362
MspR9I	CCNGG	2 cut(s)	86, 308
MvaI	CCWGG	2 cut(s)	86, 308
MvnI	CGCG	3 cut(s)	127, 293, 534
MwoI	GCNNNNNNNGC	2 cut(s)	95, 133
NdeII	GATC	5 cut(s)	142, 234, 249, 271, 397
NlaIII	CATG	2 cut(s)	278, 442
NlaIV	GGNNCC	1 cut(s)	192
NspI	RCATGY	1 cut(s)	442
PaeR7I	CTCGAG	1 cut(s)	120
PciI	ACATGT	1 cut(s)	438
PfeI	GAWTC	3 cut(s)	20, 432, 593
PflMI	CCANNNNNTGG	1 cut(s)	313
PkrI	GCNGC	3 cut(s)	169, 292, 619
PscI	ACATGT	1 cut(s)	438
PsiI	TTATAA	1 cut(s)	636
Psp6I	CCWGG	2 cut(s)	84, 306
PspFI	CCCAGC	1 cut(s)	460
PspGI	CCWGG	2 cut(s)	84, 306
PspN4I	GGNNCC	1 cut(s)	192
PspPI	GGNCC	2 cut(s)	190, 288
PspXI	VCTCGAGB	1 cut(s)	120
RsaI	GTAC	2 cut(s)	336, 627
RsaNI	GTAC	2 cut(s)	335, 626
SaqAI	TTAA	2 cut(s)	318, 362
SatI	GCNGC	3 cut(s)	168, 291, 618
Sau3AI	GATC	5 cut(s)	142, 234, 249, 271, 397
Sau96I	GGNCC	2 cut(s)	190, 288
ScaI	AGTACT	1 cut(s)	336
ScrFI	CCNGG	2 cut(s)	86, 308
SduI	GDGCHC	1 cut(s)	589
SetI	ASST	6 cut(s)	83, 324, 472, 561, 579, 619
Sfr274I	CTCGAG	1 cut(s)	120
SinI	GGWCC	1 cut(s)	190
SlaI	CTCGAG	1 cut(s)	120
SmlI	CTYRAG	1 cut(s)	120
SmoI	CTYRAG	1 cut(s)	120
Sse9I	AATT	4 cut(s)	49, 208, 299, 452
SsiI	CCGC	2 cut(s)	15, 291
SspMI	CTAG	1 cut(s)	26
StyD4I	CCNGG	2 cut(s)	84, 306
StyI	CCWWGG	1 cut(s)	42
TaaI	ACNGT	2 cut(s)	345, 376
TaqI	TCGA	3 cut(s)	121, 396, 435
TasI	AATT	4 cut(s)	49, 208, 299, 452
TatI	WGTACW	1 cut(s)	334
TauI	GCSGC	1 cut(s)	293
TfiI	GAWTC	3 cut(s)	20, 432, 593
Tru1I	TTAA	2 cut(s)	318, 362
Tru9I	TTAA	2 cut(s)	318, 362
TseI	GCWGC	2 cut(s)	167, 617
TspDTI	ATGAA	1 cut(s)	465
Van91I	CCANNNNNTGG	1 cut(s)	313
VpaK11BI	GGWCC	1 cut(s)	190
XapI	RAATTY	1 cut(s)	452
XceI	RCATGY	1 cut(s)	442
XcmI	CCANNNNNNNNNTGG	1 cut(s)	160
XhoI	CTCGAG	1 cut(s)	120
XspI	CTAG	1 cut(s)	26
ZrmI	AGTACT	1 cut(s)	336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.