FvH4_2g34060

acetyltransferase At3g50280-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0002329
Physical Location & Seq
Forward (+)
25399549 .. 25401590
2042 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g34060.t1

Sequence Viewer

Length: 1368 bp
ATGGAGTCCCCAAATGTCAAATACATCTCGGAATGCTTCATCCAGCCACACCTTGCTTCAGAAGAATCGAAGCAACCCTTTTACCTCACCCCCAGTGACCTCCCCATGCTCTCCTTCCATTACATCCAGAAAGGCCTCCTCTTCACCAAACCTCCAGAAGCCAGAAACCCCTGTTTTGTCCATACCCTTTTGGCCAAACTGAAGCACTCTCTTTCCCTCGCACTCGTTCACTTCTACCCTCTCGCCGGCCGCCTTGTCACGAAGAAGGAACAAGACCCTCATCTGTACTTGGTCTATGTGGACTGCAGCAACAGCCCCGGAGCCAAGTTCATCCATGCTTCTCTTGAAATGTCTATCTCTGACATTCTCTCCCCAACTGATGTGCCCTTGGTGGTTCAGTCCTTCTTTGATCACGACAGGGCGGTCAACCACGACGGCCACTCAACGTCGTTGCTGACGGCTCAAGTGACGGAGTTGGTGGACGGCGTTTTCATTGGGCTGTCAATGAACCACTCTCTCGTTGACGGAACATCTTACTGGAACTTCTTCAACACTTGGTCTGAGATATTCCAAGCGCAAAATAACAACATCACTCTTTCCAATCCACCAGTAATGGATCGGTGGATTCCTGAAGGTCTTGATCCTATTATCAGCTTACCTTACACCGAGCCTAGTGAGTTCATTGATAGATTCGAACCACCAAAACTCAGAGAAAGAATGTTTCACTTCTCCTCGGAATCCCTAGCCAAACTCAAAGCCAAGGCCAATTCAGAGTGCAATACTAGCAAAATCTCCACCTTCCAGGCATTGTCTGCTCTTCTCTGGAGGACTATTACTCGAGCACGTGTTCTTCCTCCTGATCAAGAAACCCGTTGCAAGTTGGCTGCGAATAACAGAGCAAGACTAGACCCGCCATTGGCTCCAAATTACTTCGGCAACTCAGTCTATCCCATCACATCAGAACCGATCAAAGCTGGTGAGTTGCTTGATCACGGGCTTGGATGGGCCGCCTTGAAGGTTCACCGGGCTGTGGTAACGCTCAATCACCAAGCTCTAAAAGGGTTTCTTGATCACTGGTTAAAGTCTCCCGCTGTGTTTAGTCCGCGATTTTTCGATCCGTTTAGTGTGATGATGGGGAGTAGTCCAAGATTCGACATGTATAGAAATGAGTTTGGGATGGGAAAAGCGGTGGCGCTTCGAAGTGGGTATGCCAACAAGTTTAGTGGCAAAGTGTCGGCGTTTCAAGGGCGGGAATCAGGAAGCATTGACTTGGAGGTGTGTCTTCCTCCAGAGACAATGGGGGCTCTTGAATCTGATGATGAGTTTATGGAAGCTGCTTCTGTAGCAAGTTATGATCAGTCAACTTAG

Protein Analysis

456

Amino Acids

50.94

Weight (kDa)

6.06

Isoelectric Point (pI)

43.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 7 - 443 9.8e-73 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 422
AccII CGCG 1 cut(s) 1105
AciI CCGC 8 cut(s) 250, 422, 911, 1008, 1089, 1103, 1187, 1249
AclWI GGATC 3 cut(s) 624, 635, 1109
AcoI YGGCCR 3 cut(s) 192, 247, 436
AcuI CTGAAG 3 cut(s) 42, 221, 651
AcvI CACGTG 1 cut(s) 845
AfaI GTAC 1 cut(s) 287
AfiI CCNNNNNNNGG 3 cut(s) 245, 916, 1030
AflIII ACRYGT 2 cut(s) 844, 1155
AgsI TTSAA 5 cut(s) 347, 550, 1015, 1244, 1310
AjnI CCWGG 1 cut(s) 801
AluBI AGCT 4 cut(s) 654, 974, 1052, 1334
AluI AGCT 4 cut(s) 654, 974, 1052, 1334
Alw21I GWGCWC 1 cut(s) 844
Alw26I GTCTC 2 cut(s) 1089, 1286
AlwI GGATC 3 cut(s) 624, 635, 1109
Ama87I CYCGRG 1 cut(s) 837
AoxI GGCC 6 cut(s) 133, 192, 247, 436, 762, 1005
ApeKI GCWGC 3 cut(s) 306, 884, 1334
Asp700I GAANNNNTTC 1 cut(s) 545
AspLEI GCGC 2 cut(s) 577, 1195
AspS9I GGNCC 1 cut(s) 1005
AsuC2I CCSGG 2 cut(s) 318, 1025
AsuHPI GGTGA 5 cut(s) 79, 136, 989, 1013, 1037
AsuII TTCGAA 2 cut(s) 693, 1198
AvaI CYCGRG 1 cut(s) 837
BaeGI GKGCMC 1 cut(s) 387
BalI TGGCCA 1 cut(s) 194
BanII GRGCYC 1 cut(s) 1306
BbrPI CACGTG 1 cut(s) 845
BbsI GAAGAC 1 cut(s) 1274
Bbv12I GWGCWC 1 cut(s) 844
BbvI GCAGC 3 cut(s) 318, 871, 1321
BccI CCATC 4 cut(s) 959, 996, 1126, 1171
BceAI ACGGC 3 cut(s) 451, 474, 499
BciT130I CCWGG 1 cut(s) 803
BclI TGATCA 5 cut(s) 409, 859, 988, 1069, 1354
BcnI CCSGG 2 cut(s) 318, 1025
BcoDI GTCTC 2 cut(s) 1089, 1286
BfaI CTAG 4 cut(s) 672, 743, 783, 905
BfmI CTRYAG 2 cut(s) 304, 1341
BfoI RGCGCY 1 cut(s) 1196
BisI GCNGC 5 cut(s) 250, 307, 885, 1008, 1335
BlsI GCNGC 5 cut(s) 251, 308, 886, 1009, 1336
Bme1390I CCNGG 3 cut(s) 318, 803, 1025
BmeT110I CYCGRG 1 cut(s) 837
BmgT120I GGNCC 1 cut(s) 1005
BmiI GGNNCC 2 cut(s) 322, 921
BmrFI CCNGG 3 cut(s) 318, 803, 1025
BmrI ACTGGG 1 cut(s) 87
BmuI ACTGGG 1 cut(s) 87
BpiI GAAGAC 1 cut(s) 1274
BpmI CTGGAG 3 cut(s) 138, 844, 1272
Bpu14I TTCGAA 2 cut(s) 693, 1198
BpuEI CTTGAG 1 cut(s) 447
BpuMI CCSGG 2 cut(s) 318, 1025
BsaAI YACGTR 1 cut(s) 845
BsaJI CCNNGG 4 cut(s) 316, 387, 732, 759
BsaXI ACNNNNNCTCC 4 cut(s) 136, 166, 353, 383
Bsc4I CCNNNNNNNGG 3 cut(s) 245, 916, 1030
Bse118I RCCGGY 1 cut(s) 245
Bse1I ACTGG 4 cut(s) 93, 542, 608, 1079
BseBI CCWGG 1 cut(s) 803
BseDI CCNNGG 4 cut(s) 316, 387, 732, 759
BseGI GGATG 5 cut(s) 39, 123, 330, 1007, 1182
BseLI CCNNNNNNNGG 3 cut(s) 245, 916, 1030
BseMII CTCAG 3 cut(s) 552, 721, 954
BseNI ACTGG 4 cut(s) 93, 542, 608, 1079
BseRI GAGGAG 2 cut(s) 128, 721
BseSI GKGCMC 1 cut(s) 387
BseX3I CGGCCG 1 cut(s) 247
BseXI GCAGC 3 cut(s) 318, 871, 1321
Bsh1236I CGCG 1 cut(s) 1105
Bsh1285I CGRYCG 1 cut(s) 250
BshFI GGCC 6 cut(s) 135, 194, 249, 438, 764, 1007
BsiEI CGRYCG 1 cut(s) 250
BsiHKAI GWGCWC 1 cut(s) 844
BsiHKCI CYCGRG 1 cut(s) 837
BsiSI CCGG 3 cut(s) 246, 318, 1024
BslI CCNNNNNNNGG 3 cut(s) 245, 916, 1030
BsmAI GTCTC 2 cut(s) 1089, 1286
BsmI GAATGC 1 cut(s) 38
BsnI GGCC 6 cut(s) 135, 194, 249, 438, 764, 1007
BsoBI CYCGRG 1 cut(s) 837
Bsp119I TTCGAA 2 cut(s) 693, 1198
Bsp1286I GDGCHC 3 cut(s) 387, 844, 1306
Bsp143I GATC 9 cut(s) 409, 616, 640, 859, 966, 988, 1069, 1114, 1354
BspACI CCGC 8 cut(s) 250, 422, 911, 1008, 1089, 1103, 1187, 1249
BspANI GGCC 6 cut(s) 135, 194, 249, 438, 764, 1007
BspCNI CTCAG 3 cut(s) 553, 720, 953
BspFNI CGCG 1 cut(s) 1105
BspLI GGNNCC 2 cut(s) 322, 921
BspMAI CTGCAG 1 cut(s) 308
BspPI GGATC 3 cut(s) 624, 635, 1109
BspQI GCTCTTC 1 cut(s) 822
BspT104I TTCGAA 2 cut(s) 693, 1198
BsrFI RCCGGY 1 cut(s) 245
BsrI ACTGG 4 cut(s) 93, 542, 608, 1079
BssAI RCCGGY 1 cut(s) 245
BssECI CCNNGG 4 cut(s) 316, 387, 732, 759
BssMI GATC 9 cut(s) 409, 616, 640, 859, 966, 988, 1069, 1114, 1354
BssT1I CCWWGG 2 cut(s) 387, 759
Bst2UI CCWGG 1 cut(s) 803
Bst6I CTCTTC 2 cut(s) 146, 822
BstAPI GCANNNNNTGC 1 cut(s) 812
BstBAI YACGTR 1 cut(s) 845
BstBI TTCGAA 2 cut(s) 693, 1198
BstC8I GCNNGC 1 cut(s) 247
BstDEI CTNAG 4 cut(s) 561, 707, 940, 1365
BstF5I GGATG 5 cut(s) 39, 123, 330, 1007, 1182
BstFNI CGCG 1 cut(s) 1105
BstH2I RGCGCY 1 cut(s) 1196
BstHHI GCGC 2 cut(s) 577, 1195
BstKTI GATC 9 cut(s) 412, 619, 643, 862, 969, 991, 1072, 1117, 1357
BstMAI GTCTC 2 cut(s) 1089, 1286
BstMBI GATC 9 cut(s) 409, 616, 640, 859, 966, 988, 1069, 1114, 1354
BstMCI CGRYCG 1 cut(s) 250
BstMWI GCNNNNNNNGC 4 cut(s) 312, 783, 812, 1343
BstNI CCWGG 1 cut(s) 803
BstNSI RCATGY 1 cut(s) 1159
BstSCI CCNGG 3 cut(s) 316, 801, 1023
BstSFI CTRYAG 2 cut(s) 304, 1341
BstSLI GKGCMC 1 cut(s) 387
BstUI CGCG 1 cut(s) 1105
BstV1I GCAGC 3 cut(s) 318, 871, 1321
BstV2I GAAGAC 1 cut(s) 1274
BstZI CGGCCG 1 cut(s) 247
BsuRI GGCC 6 cut(s) 135, 194, 249, 438, 764, 1007
BtsCI GGATG 5 cut(s) 39, 123, 330, 1007, 1182
BtsIMutI CAGTG 2 cut(s) 100, 1072
Cac8I GCNNGC 1 cut(s) 247
CfoI GCGC 2 cut(s) 577, 1195
Cfr10I RCCGGY 1 cut(s) 245
Cfr13I GGNCC 1 cut(s) 1005
Csp6I GTAC 1 cut(s) 286
CspCI CAANNNNNGTGG 2 cut(s) 1204, 1239
CviAII CATG 3 cut(s) 106, 335, 1156
CviQI GTAC 1 cut(s) 286
DdeI CTNAG 4 cut(s) 561, 707, 940, 1365
DpnI GATC 9 cut(s) 411, 618, 642, 861, 968, 990, 1071, 1116, 1356
DpnII GATC 9 cut(s) 409, 616, 640, 859, 966, 988, 1069, 1114, 1354
DrdI GACNNNNNNGTC 1 cut(s) 422
DseDI GACNNNNNNGTC 1 cut(s) 422
EaeI YGGCCR 3 cut(s) 192, 247, 436
EagI CGGCCG 1 cut(s) 247
Eam1104I CTCTTC 2 cut(s) 146, 822
EarI CTCTTC 2 cut(s) 146, 822
EclXI CGGCCG 1 cut(s) 247
Eco130I CCWWGG 2 cut(s) 387, 759
Eco147I AGGCCT 1 cut(s) 135
Eco24I GRGCYC 1 cut(s) 1306
Eco52I CGGCCG 1 cut(s) 247
Eco57I CTGAAG 3 cut(s) 42, 221, 651
Eco72I CACGTG 1 cut(s) 845
Eco88I CYCGRG 1 cut(s) 837
EcoRII CCWGG 1 cut(s) 801
EcoT14I CCWWGG 2 cut(s) 387, 759
EcoT38I GRGCYC 1 cut(s) 1306
ErhI CCWWGG 2 cut(s) 387, 759
FaeI CATG 3 cut(s) 109, 338, 1159
FaiI YATR 9 cut(s) 107, 183, 297, 336, 1157, 1161, 1209, 1328, 1353
FalI AAGNNNNNCTT 4 cut(s) 62, 94, 1050, 1082
FatI CATG 3 cut(s) 105, 334, 1155
FauI CCCGC 3 cut(s) 918, 1096, 1242
FbaI TGATCA 5 cut(s) 409, 859, 988, 1069, 1354
Fnu4HI GCNGC 5 cut(s) 250, 307, 885, 1008, 1335
FokI GGATG 5 cut(s) 26, 110, 317, 1014, 1189
FriOI GRGCYC 1 cut(s) 1306
Fsp4HI GCNGC 5 cut(s) 250, 307, 885, 1008, 1335
FspBI CTAG 4 cut(s) 672, 743, 783, 905
GlaI GCGC 2 cut(s) 576, 1194
GluI GCNGC 5 cut(s) 250, 307, 885, 1008, 1335
GsuI CTGGAG 3 cut(s) 138, 844, 1272
HaeII RGCGCY 1 cut(s) 1196
HaeIII GGCC 6 cut(s) 135, 194, 249, 438, 764, 1007
HapII CCGG 3 cut(s) 246, 318, 1024
HhaI GCGC 2 cut(s) 577, 1195
Hin1II CATG 3 cut(s) 109, 338, 1159
Hin6I GCGC 2 cut(s) 575, 1193
HinP1I GCGC 2 cut(s) 575, 1193
HincII GTYRAC 3 cut(s) 427, 523, 1362
HindII GTYRAC 3 cut(s) 427, 523, 1362
HinfI GANTC 8 cut(s) 5, 65, 625, 690, 737, 1149, 1253, 1310
HpaII CCGG 3 cut(s) 246, 318, 1024
HphI GGTGA 5 cut(s) 79, 136, 989, 1013, 1037
Hpy166II GTNNAC 7 cut(s) 229, 301, 427, 481, 523, 1021, 1362
Hpy188I TCNGA 9 cut(s) 31, 61, 361, 562, 710, 736, 772, 961, 1315
Hpy8I GTNNAC 7 cut(s) 229, 301, 427, 481, 523, 1021, 1362
Hpy99I CGWCG 2 cut(s) 437, 451
HpyAV CCTTC 6 cut(s) 124, 259, 412, 626, 808, 1009
HpyCH4IV ACGT 2 cut(s) 446, 844
HpyCH4V TGCA 3 cut(s) 306, 777, 876
HpyF10VI GCNNNNNNNGC 4 cut(s) 312, 783, 812, 1343
HpyF3I CTNAG 4 cut(s) 561, 707, 940, 1365
HpySE526I ACGT 2 cut(s) 446, 844
Hsp92II CATG 3 cut(s) 109, 338, 1159
HspAI GCGC 2 cut(s) 575, 1193
KroI GCCGGC 1 cut(s) 245
KroNI GCCGGC 1 cut(s) 247
Ksp22I TGATCA 5 cut(s) 409, 859, 988, 1069, 1354
Kzo9I GATC 9 cut(s) 409, 616, 640, 859, 966, 988, 1069, 1114, 1354
LguI GCTCTTC 1 cut(s) 822
LmnI GCTCC 2 cut(s) 320, 925
Lsp1109I GCAGC 3 cut(s) 318, 871, 1321
MaeI CTAG 4 cut(s) 672, 743, 783, 905
MaeII ACGT 2 cut(s) 446, 844
MaeIII GTNAC 4 cut(s) 95, 256, 466, 1033
MalI GATC 9 cut(s) 411, 618, 642, 861, 968, 990, 1071, 1116, 1356
MboI GATC 9 cut(s) 409, 616, 640, 859, 966, 988, 1069, 1114, 1354
MboII GAAGA 7 cut(s) 74, 133, 274, 538, 809, 842, 1274
MhlI GDGCHC 3 cut(s) 387, 844, 1306
MlsI TGGCCA 1 cut(s) 194
MluCI AATT 2 cut(s) 766, 925
MluNI TGGCCA 1 cut(s) 194
MlyI GAGTC 1 cut(s) 14
Mox20I TGGCCA 1 cut(s) 194
MroNI GCCGGC 1 cut(s) 245
MroXI GAANNNNTTC 1 cut(s) 545
MscI TGGCCA 1 cut(s) 194
MseI TTAA 1 cut(s) 1079
Msp20I TGGCCA 1 cut(s) 194
MspA1I CMGCKG 1 cut(s) 1091
MspI CCGG 3 cut(s) 246, 318, 1024
MspR9I CCNGG 3 cut(s) 318, 803, 1025
Mva1269I GAATGC 1 cut(s) 38
MvaI CCWGG 1 cut(s) 803
MvnI CGCG 1 cut(s) 1105
MwoI GCNNNNNNNGC 4 cut(s) 312, 783, 812, 1343
NaeI GCCGGC 1 cut(s) 247
NciI CCSGG 2 cut(s) 318, 1025
NdeII GATC 9 cut(s) 409, 616, 640, 859, 966, 988, 1069, 1114, 1354
NgoMIV GCCGGC 1 cut(s) 245
NlaIII CATG 3 cut(s) 109, 338, 1159
NlaIV GGNNCC 2 cut(s) 322, 921
NmuCI GTSAC 3 cut(s) 95, 256, 466
NspI RCATGY 1 cut(s) 1159
NspV TTCGAA 2 cut(s) 693, 1198
PaeR7I CTCGAG 1 cut(s) 837
PceI AGGCCT 1 cut(s) 135
PciI ACATGT 1 cut(s) 1155
PciSI GCTCTTC 1 cut(s) 822
PctI GAATGC 1 cut(s) 38
PdiI GCCGGC 1 cut(s) 247
PdmI GAANNNNTTC 1 cut(s) 545
PfeI GAWTC 7 cut(s) 65, 625, 690, 737, 1149, 1253, 1310
PkrI GCNGC 5 cut(s) 251, 308, 886, 1009, 1336
PleI GAGTC 1 cut(s) 13
PmaCI CACGTG 1 cut(s) 845
PmlI CACGTG 1 cut(s) 845
PpsI GAGTC 1 cut(s) 13
Ppu21I YACGTR 1 cut(s) 845
PscI ACATGT 1 cut(s) 1155
Psp6I CCWGG 1 cut(s) 801
PspCI CACGTG 1 cut(s) 845
PspGI CCWGG 1 cut(s) 801
PspN4I GGNNCC 2 cut(s) 322, 921
PspPI GGNCC 1 cut(s) 1005
PspXI VCTCGAGB 1 cut(s) 837
PstI CTGCAG 1 cut(s) 308
RsaI GTAC 1 cut(s) 287
RsaNI GTAC 1 cut(s) 286
SapI GCTCTTC 1 cut(s) 822
SaqAI TTAA 1 cut(s) 1079
SatI GCNGC 5 cut(s) 250, 307, 885, 1008, 1335
Sau3AI GATC 9 cut(s) 409, 616, 640, 859, 966, 988, 1069, 1114, 1354
Sau96I GGNCC 1 cut(s) 1005
SchI GAGTC 1 cut(s) 14
ScrFI CCNGG 3 cut(s) 318, 803, 1025
SduI GDGCHC 3 cut(s) 387, 844, 1306
SfcI CTRYAG 2 cut(s) 304, 1341
Sfr274I CTCGAG 1 cut(s) 837
SfuI TTCGAA 2 cut(s) 693, 1198
SlaI CTCGAG 1 cut(s) 837
SmlI CTYRAG 2 cut(s) 462, 837
SmoI CTYRAG 2 cut(s) 462, 837
Sse9I AATT 2 cut(s) 766, 925
SseBI AGGCCT 1 cut(s) 135
SsiI CCGC 8 cut(s) 250, 422, 911, 1008, 1089, 1103, 1187, 1249
SspMI CTAG 4 cut(s) 672, 743, 783, 905
StuI AGGCCT 1 cut(s) 135
StyD4I CCNGG 3 cut(s) 316, 801, 1023
StyI CCWWGG 2 cut(s) 387, 759
TaiI ACGT 2 cut(s) 449, 847
TaqI TCGA 6 cut(s) 68, 693, 838, 1113, 1152, 1198
TasI AATT 2 cut(s) 766, 925
TatI WGTACW 1 cut(s) 285
TauI GCSGC 2 cut(s) 252, 1010
TfiI GAWTC 7 cut(s) 65, 625, 690, 737, 1149, 1253, 1310
Tru1I TTAA 1 cut(s) 1079
Tru9I TTAA 1 cut(s) 1079
TscAI CASTG 2 cut(s) 100, 1079
TseFI GTSAC 3 cut(s) 95, 256, 466
TseI GCWGC 3 cut(s) 306, 884, 1334
Tsp45I GTSAC 3 cut(s) 95, 256, 466
TspDTI ATGAA 5 cut(s) 28, 319, 481, 521, 670
TspGWI ACGGA 3 cut(s) 485, 540, 1107
TspRI CASTG 2 cut(s) 100, 1079
XceI RCATGY 1 cut(s) 1159
XhoI CTCGAG 1 cut(s) 837
XmnI GAANNNNTTC 1 cut(s) 545
XspI CTAG 4 cut(s) 672, 743, 783, 905
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.