AT5G42830

Its function is described as transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0002329
Physical Location & Seq
Forward (+)
17176293 .. 17178130
1838 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G42830.1

Sequence Viewer

Length: 1353 bp
ATGGATTCTTCATCTTCAGTAAAAATCGTCTCGAAAAGCTTCGTGAAACCCAAAACCTTACCAGAAGAATCAAAGCAACCATACTATTTATCTCCATGGGACTACGCAATGCTCTCTGTTCAGTACATCCAAAAAGGTCTTCTCTTTCACAAGCCACCACTTGACTCCATTGACACTCTTCTTGAGAAGCTAAAAGATTCTCTGGCCGTCACACTAGTCCATTTCTACCCTCTCGCGGGTCGCCTCTCATCGTTAACAACGGAAAAACCGAAATCTTACTCTGTTTTCGTTGATTGTAACGATAGCCCTGGCGCGGGGTTTATCTACGCGACCTCAGATTTATGTATAAAAGATATTGTGGGTGCTAAGTATGTCCCTTCAATTGTTCAATCTTTCTTTGACCATCACAAAGCTGTGAATCATGATGGACACACCATGAGCCTCTTATCTGTCCAGGTGACAGAATTGGTAGATGGAATTTTCATAGGACTGTCTATGAACCATGCGATGGGAGACGGTACTGCGTTCTGGAAGTTCTTTACCGCATGGTCCGAAATCTTCCAAGGACAAGAGAGCAACCAAAACGATGACTTGTGTCTTAAGAATCCACCCGTGTTGAAGCGTTACATCCCTGAAGGATACGGTCCTCTATTCAGCCTTCCATATAGTCATCCAGATGAATTTATCAGAACCTACGAATCTCCAATTCTCAAGGAGAGAATGTTCTGTTTCTCATCAGAAACCATAAGAATGCTTAAAACAAGGGTCAACCAAATATGCGGAACAACCTCCATCTCATCTTTCCAATCGCTAACCGCGGTTATATGGAGATGCATAACAAGGGCGAGGAGATTACCTCTCGATCGAGAAACAAGTTGTAGAGTTGCTGCTGACAACAGAGGAAGAATGTATCCACCGCTTCACAAGGATTACTTCGGAAACTGCCTCTCTGCTTTGAGAACGGCTGCAAAAGCTGGTGAACTATTGGAGAATGATCTTGGATTTGCTGCTTTGAAAGTGCATCAAGCAGTAGCTGAACATACGAGCGAAAAGGTATCTCAAATGATTGATCAATGGCTAAAGTCTCCTTATATTTACCATATTGATCGGCTATTTGAACCGATGAGCGTTATGATGGGAAGCTCGCCGAGGTTTAATAAGTATGGTTGTGAATTTGGGTTGGGAAAAGGAGTGACGCTTAGAAGTGGCTATGCGCATAAGTTCGATGGAAAGGTATCTGCTTACCCGGGAAGAGAAGGAGGGGGAAGTATAGATTTGGAGGTATGTCTTGTTCCAGAGTTTATGGAAGCTTTGGAATCAGATGAAGAGTTCATGTCACTTGTTTCTCTTTGA

Protein Analysis

450

Amino Acids

50.52

Weight (kDa)

6.37

Isoelectric Point (pI)

41.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 6 - 445 3.6e-81 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1215
AccB7I CCANNNNNTGG 1 cut(s) 508
AccII CGCG 4 cut(s) 236, 314, 329, 818
AciI CCGC 7 cut(s) 236, 314, 543, 780, 816, 818, 917
AcoI YGGCCR 1 cut(s) 204
AcsI RAATTY 3 cut(s) 477, 680, 1172
AcuI CTGAAG 1 cut(s) 654
AfaI GTAC 2 cut(s) 125, 520
AfiI CCNNNNNNNGG 5 cut(s) 235, 236, 313, 314, 508
AflII CTTAAG 1 cut(s) 599
AgsI TTSAA 5 cut(s) 381, 389, 619, 1015, 1118
AhlI ACTAGT 1 cut(s) 214
AjnI CCWGG 2 cut(s) 307, 453
AjuI GAANNNNNNNTTGG 2 cut(s) 123, 155
AloI GAACNNNNNNTCC 2 cut(s) 707, 739
AluBI AGCT 7 cut(s) 39, 190, 413, 974, 1034, 1143, 1310
AluI AGCT 7 cut(s) 39, 190, 413, 974, 1034, 1143, 1310
Alw26I GTCTC 3 cut(s) 34, 507, 1089
AlwNI CAGNNNCTG 1 cut(s) 1034
Ama87I CYCGRG 1 cut(s) 1246
AoxI GGCC 1 cut(s) 204
ApeKI GCWGC 3 cut(s) 887, 965, 1007
ApoI RAATTY 3 cut(s) 477, 680, 1172
Asp700I GAANNNNTTC 1 cut(s) 38
AspLEI GCGC 2 cut(s) 314, 1216
AspS9I GGNCC 2 cut(s) 549, 644
AsuC2I CCSGG 2 cut(s) 1247, 1248
AsuHPI GGTGA 2 cut(s) 469, 989
AvaI CYCGRG 1 cut(s) 1246
AvaII GGWCC 2 cut(s) 549, 644
BbsI GAAGAC 1 cut(s) 131
BbvI GCAGC 3 cut(s) 874, 952, 994
BccI CCATC 7 cut(s) 411, 419, 467, 502, 800, 1129, 1220
BceAI ACGGC 2 cut(s) 191, 978
BciT130I CCWGG 2 cut(s) 309, 455
BciVI GTATCC 2 cut(s) 632, 921
BclI TGATCA 1 cut(s) 1069
BcnI CCSGG 2 cut(s) 1247, 1248
BcoDI GTCTC 3 cut(s) 34, 507, 1089
BcuI ACTAGT 1 cut(s) 214
BfaI CTAG 1 cut(s) 215
BfrI CTTAAG 1 cut(s) 599
BfuI GTATCC 2 cut(s) 632, 921
BisI GCNGC 3 cut(s) 888, 966, 1008
BlsI GCNGC 3 cut(s) 889, 967, 1009
Bme1390I CCNGG 4 cut(s) 309, 455, 1247, 1248
Bme18I GGWCC 2 cut(s) 549, 644
BmeT110I CYCGRG 1 cut(s) 1246
BmgT120I GGNCC 2 cut(s) 549, 644
BmrFI CCNGG 4 cut(s) 309, 455, 1247, 1248
BmsI GCATC 2 cut(s) 821, 1030
BoxI GACNNNNGTC 1 cut(s) 594
BpiI GAAGAC 1 cut(s) 131
BplI GAGNNNNNCTC 2 cut(s) 841, 873
BpuEI CTTGAG 2 cut(s) 203, 695
BpuMI CCSGG 2 cut(s) 1247, 1248
BsaJI CCNNGG 6 cut(s) 95, 307, 562, 816, 1148, 1246
BsaXI ACNNNNNCTCC 2 cut(s) 707, 737
Bsc4I CCNNNNNNNGG 5 cut(s) 235, 236, 313, 314, 508
Bse3DI GCAATG 1 cut(s) 114
BseBI CCWGG 2 cut(s) 309, 455
BseDI CCNNGG 6 cut(s) 95, 307, 562, 816, 1148, 1246
BseGI GGATG 3 cut(s) 126, 627, 670
BseLI CCNNNNNNNGG 5 cut(s) 235, 236, 313, 314, 508
BseMI GCAATG 1 cut(s) 114
BseMII CTCAG 1 cut(s) 348
BseRI GAGGAG 1 cut(s) 862
BseXI GCAGC 3 cut(s) 874, 952, 994
Bsh1236I CGCG 4 cut(s) 236, 314, 329, 818
Bsh1285I CGRYCG 1 cut(s) 865
BshFI GGCC 1 cut(s) 206
BsiEI CGRYCG 1 cut(s) 865
BsiHKCI CYCGRG 1 cut(s) 1246
BsiSI CCGG 1 cut(s) 1247
BslFI GGGAC 2 cut(s) 113, 359
BslI CCNNNNNNNGG 5 cut(s) 235, 236, 313, 314, 508
BsmAI GTCTC 3 cut(s) 34, 507, 1089
BsmBI CGTCTC 2 cut(s) 34, 507
BsmFI GGGAC 2 cut(s) 113, 359
BsmI GAATGC 1 cut(s) 756
BsnI GGCC 1 cut(s) 206
BsoBI CYCGRG 1 cut(s) 1246
Bsp143I GATC 4 cut(s) 862, 994, 1069, 1105
Bsp19I CCATGG 1 cut(s) 95
BspACI CCGC 7 cut(s) 236, 314, 543, 780, 816, 818, 917
BspANI GGCC 1 cut(s) 206
BspCNI CTCAG 1 cut(s) 347
BspFNI CGCG 4 cut(s) 236, 314, 329, 818
BspHI TCATGA 1 cut(s) 421
BspTI CTTAAG 1 cut(s) 599
BsrDI GCAATG 1 cut(s) 114
BssECI CCNNGG 6 cut(s) 95, 307, 562, 816, 1148, 1246
BssMI GATC 4 cut(s) 862, 994, 1069, 1105
BssT1I CCWWGG 2 cut(s) 95, 562
Bst2UI CCWGG 2 cut(s) 309, 455
Bst4CI ACNGT 3 cut(s) 492, 518, 644
Bst6I CTCTTC 3 cut(s) 183, 1246, 1320
BstAFI CTTAAG 1 cut(s) 599
BstC8I GCNNGC 1 cut(s) 1145
BstDEI CTNAG 3 cut(s) 334, 366, 1199
BstDSI CCRYGG 2 cut(s) 95, 816
BstF5I GGATG 3 cut(s) 126, 627, 670
BstFNI CGCG 4 cut(s) 236, 314, 329, 818
BstHHI GCGC 2 cut(s) 314, 1216
BstKTI GATC 4 cut(s) 865, 997, 1072, 1108
BstMAI GTCTC 3 cut(s) 34, 507, 1089
BstMBI GATC 4 cut(s) 862, 994, 1069, 1105
BstMCI CGRYCG 1 cut(s) 865
BstMWI GCNNNNNNNGC 1 cut(s) 971
BstNI CCWGG 2 cut(s) 309, 455
BstPAI GACNNNNGTC 1 cut(s) 594
BstSCI CCNGG 4 cut(s) 307, 453, 1245, 1246
BstUI CGCG 4 cut(s) 236, 314, 329, 818
BstV1I GCAGC 3 cut(s) 874, 952, 994
BstV2I GAAGAC 1 cut(s) 131
BsuI GTATCC 2 cut(s) 632, 921
BsuRI GGCC 1 cut(s) 206
BtgI CCRYGG 2 cut(s) 95, 816
BtgZI GCGATG 1 cut(s) 521
BtsCI GGATG 3 cut(s) 126, 627, 670
Cac8I GCNNGC 1 cut(s) 1145
CaiI CAGNNNCTG 1 cut(s) 1034
CciI TCATGA 1 cut(s) 421
CfoI GCGC 2 cut(s) 314, 1216
Cfr13I GGNCC 2 cut(s) 549, 644
Cfr42I CCGCGG 1 cut(s) 819
Cfr9I CCCGGG 1 cut(s) 1246
CseI GACGC 1 cut(s) 1204
Csp6I GTAC 2 cut(s) 124, 519
CspCI CAANNNNNGTGG 2 cut(s) 597, 632
CviAII CATG 6 cut(s) 96, 422, 436, 503, 546, 1333
CviQI GTAC 2 cut(s) 124, 519
DdeI CTNAG 3 cut(s) 334, 366, 1199
DpnI GATC 4 cut(s) 864, 996, 1071, 1107
DpnII GATC 4 cut(s) 862, 994, 1069, 1105
EaeI YGGCCR 1 cut(s) 204
Eam1104I CTCTTC 3 cut(s) 183, 1246, 1320
EarI CTCTTC 3 cut(s) 183, 1246, 1320
Eco130I CCWWGG 2 cut(s) 95, 562
Eco47I GGWCC 2 cut(s) 549, 644
Eco57I CTGAAG 1 cut(s) 654
Eco88I CYCGRG 1 cut(s) 1246
EcoRII CCWGG 2 cut(s) 307, 453
EcoT14I CCWWGG 2 cut(s) 95, 562
EcoT22I ATGCAT 1 cut(s) 836
ErhI CCWWGG 2 cut(s) 95, 562
Esp3I CGTCTC 2 cut(s) 34, 507
FaeI CATG 6 cut(s) 99, 425, 439, 506, 549, 1336
FalI AAGNNNNNCTT 2 cut(s) 917, 949
FaqI GGGAC 2 cut(s) 113, 359
FatI CATG 6 cut(s) 95, 421, 435, 502, 545, 1332
FauI CCCGC 2 cut(s) 229, 307
FbaI TGATCA 1 cut(s) 1069
Fnu4HI GCNGC 3 cut(s) 888, 966, 1008
FokI GGATG 3 cut(s) 113, 614, 657
Fsp4HI GCNGC 3 cut(s) 888, 966, 1008
FspAI RTGCGCAY 1 cut(s) 1215
FspBI CTAG 1 cut(s) 215
FspI TGCGCA 1 cut(s) 1215
GlaI GCGC 2 cut(s) 313, 1215
GluI GCNGC 3 cut(s) 888, 966, 1008
HaeIII GGCC 1 cut(s) 206
HapII CCGG 1 cut(s) 1247
HgaI GACGC 1 cut(s) 1204
HhaI GCGC 2 cut(s) 314, 1216
Hin1II CATG 6 cut(s) 99, 425, 439, 506, 549, 1336
Hin6I GCGC 2 cut(s) 312, 1214
HinP1I GCGC 2 cut(s) 312, 1214
HincII GTYRAC 2 cut(s) 255, 769
HindII GTYRAC 2 cut(s) 255, 769
HindIII AAGCTT 2 cut(s) 37, 1308
HinfI GANTC 8 cut(s) 5, 68, 164, 197, 418, 604, 698, 1316
HpaI GTTAAC 1 cut(s) 255
HpaII CCGG 1 cut(s) 1247
HphI GGTGA 2 cut(s) 469, 989
Hpy166II GTNNAC 3 cut(s) 255, 769, 980
Hpy188I TCNGA 6 cut(s) 337, 553, 689, 739, 938, 1321
Hpy188III TCNNGA 9 cut(s) 31, 43, 182, 422, 529, 674, 860, 866, 1295
Hpy8I GTNNAC 3 cut(s) 255, 769, 980
HpyAV CCTTC 4 cut(s) 387, 629, 668, 1250
HpyCH4III ACNGT 3 cut(s) 492, 518, 644
HpyCH4V TGCA 3 cut(s) 834, 968, 1021
HpyF10VI GCNNNNNNNGC 1 cut(s) 971
HpyF3I CTNAG 3 cut(s) 334, 366, 1199
Hsp92II CATG 6 cut(s) 99, 425, 439, 506, 549, 1336
HspAI GCGC 2 cut(s) 312, 1214
Ksp22I TGATCA 1 cut(s) 1069
KspAI GTTAAC 1 cut(s) 255
KspI CCGCGG 1 cut(s) 819
Kzo9I GATC 4 cut(s) 862, 994, 1069, 1105
Lsp1109I GCAGC 3 cut(s) 874, 952, 994
LweI GCATC 2 cut(s) 821, 1030
MaeI CTAG 1 cut(s) 215
MaeIII GTNAC 6 cut(s) 208, 296, 457, 623, 1192, 1335
MalI GATC 4 cut(s) 864, 996, 1071, 1107
MboI GATC 4 cut(s) 862, 994, 1069, 1105
MboII GAAGA 8 cut(s) 6, 77, 131, 170, 550, 915, 1263, 1337
MfeI CAATTG 1 cut(s) 381
MluCI AATT 6 cut(s) 381, 464, 477, 680, 705, 1172
MlyI GAGTC 1 cut(s) 158
Mph1103I ATGCAT 1 cut(s) 836
MroXI GAANNNNTTC 1 cut(s) 38
MseI TTAA 4 cut(s) 254, 600, 756, 1155
MslI CAYNNNNRTG 2 cut(s) 675, 749
MspA1I CMGCKG 1 cut(s) 818
MspCI CTTAAG 1 cut(s) 599
MspI CCGG 1 cut(s) 1247
MspR9I CCNGG 4 cut(s) 309, 455, 1247, 1248
MunI CAATTG 1 cut(s) 381
Mva1269I GAATGC 1 cut(s) 756
MvaI CCWGG 2 cut(s) 309, 455
MvnI CGCG 4 cut(s) 236, 314, 329, 818
MwoI GCNNNNNNNGC 1 cut(s) 971
NciI CCSGG 2 cut(s) 1247, 1248
NcoI CCATGG 1 cut(s) 95
NdeII GATC 4 cut(s) 862, 994, 1069, 1105
NlaIII CATG 6 cut(s) 99, 425, 439, 506, 549, 1336
NmeAIII GCCGAG 1 cut(s) 1173
NmuCI GTSAC 4 cut(s) 208, 457, 1192, 1335
NsbI TGCGCA 1 cut(s) 1215
NsiI ATGCAT 1 cut(s) 836
PagI TCATGA 1 cut(s) 421
PcsI WCGNNNNNNNCGW 1 cut(s) 266
PctI GAATGC 1 cut(s) 756
PdmI GAANNNNTTC 1 cut(s) 38
PfeI GAWTC 7 cut(s) 5, 68, 197, 418, 604, 698, 1316
PflMI CCANNNNNTGG 1 cut(s) 508
PkrI GCNGC 3 cut(s) 889, 967, 1009
Ple19I CGATCG 1 cut(s) 865
PleI GAGTC 1 cut(s) 158
PpsI GAGTC 1 cut(s) 158
PshAI GACNNNNGTC 1 cut(s) 594
Psp6I CCWGG 2 cut(s) 307, 453
PspGI CCWGG 2 cut(s) 307, 453
PspPI GGNCC 2 cut(s) 549, 644
PsrI GAACNNNNNNTAC 2 cut(s) 1275, 1307
PstNI CAGNNNCTG 1 cut(s) 1034
PvuI CGATCG 1 cut(s) 865
RsaI GTAC 2 cut(s) 125, 520
RsaNI GTAC 2 cut(s) 124, 519
RseI CAYNNNNRTG 2 cut(s) 675, 749
SacII CCGCGG 1 cut(s) 819
SaqAI TTAA 4 cut(s) 254, 600, 756, 1155
SatI GCNGC 3 cut(s) 888, 966, 1008
Sau3AI GATC 4 cut(s) 862, 994, 1069, 1105
Sau96I GGNCC 2 cut(s) 549, 644
SchI GAGTC 1 cut(s) 158
ScrFI CCNGG 4 cut(s) 309, 455, 1247, 1248
SfaNI GCATC 2 cut(s) 821, 1030
Sfr303I CCGCGG 1 cut(s) 819
SgrBI CCGCGG 1 cut(s) 819
SinI GGWCC 2 cut(s) 549, 644
SmaI CCCGGG 1 cut(s) 1248
SmiMI CAYNNNNRTG 2 cut(s) 675, 749
SmlI CTYRAG 3 cut(s) 182, 599, 710
SmoI CTYRAG 3 cut(s) 182, 599, 710
SpeI ACTAGT 1 cut(s) 214
Sse9I AATT 6 cut(s) 381, 464, 477, 680, 705, 1172
SsiI CCGC 7 cut(s) 236, 314, 543, 780, 816, 818, 917
SspMI CTAG 1 cut(s) 215
StyD4I CCNGG 4 cut(s) 307, 453, 1245, 1246
StyI CCWWGG 2 cut(s) 95, 562
TaaI ACNGT 3 cut(s) 492, 518, 644
TaqI TCGA 4 cut(s) 32, 861, 865, 1224
TasI AATT 6 cut(s) 381, 464, 477, 680, 705, 1172
TatI WGTACW 1 cut(s) 123
TfiI GAWTC 7 cut(s) 5, 68, 197, 418, 604, 698, 1316
Tru1I TTAA 4 cut(s) 254, 600, 756, 1155
Tru9I TTAA 4 cut(s) 254, 600, 756, 1155
TseFI GTSAC 4 cut(s) 208, 457, 1192, 1335
TseI GCWGC 3 cut(s) 887, 965, 1007
Tsp45I GTSAC 4 cut(s) 208, 457, 1192, 1335
TspDTI ATGAA 5 cut(s) 472, 512, 693, 1321, 1338
TspGWI ACGGA 1 cut(s) 275
TspMI CCCGGG 1 cut(s) 1246
Van91I CCANNNNNTGG 1 cut(s) 508
Vha464I CTTAAG 1 cut(s) 599
VpaK11BI GGWCC 2 cut(s) 549, 644
XapI RAATTY 3 cut(s) 477, 680, 1172
XmaI CCCGGG 1 cut(s) 1246
XmnI GAANNNNTTC 1 cut(s) 38
XspI CTAG 1 cut(s) 215
Zsp2I ATGCAT 1 cut(s) 836
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.