Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0002329

Physical Location & Seq

Genomic Coordinates Forward (+)

69121810 .. 69123376

Gene Structure 1567 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG486400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

ATGGAGTCCCCAAATGTCAAACACATCTCAGAATGCTTTATCCAACCTCACAATGCTTCGAAAGAATCAAAGAAGCCCTTTTATTTGACCCCCACTGACCTCGCCATGCTCTCCGAGCAATATATCCAGAAAGGTCTCCTCTTCACCAAACCTCCAAAAGCGAACAACCCTAATTTTCTTGAGACCCTTTTGGCGAAACTGAAGCACTCTCTTTCCCTCGCACTCGTTCACTTCTACCCGCTAGCGGGTCGCCTTGTGACCAAGAAAGAACAAGACCCTCATCTCTACTTGGTCTATGTGGATTGCAGCAATAGCCCTGGAGCTAAATTCATCCATGCTTCTCTTGACATGTCCATCTCGGACATTCTTTCCCCAACTGATGTGCCCTTGGTGGTTCAGTCCTTGTTTGATCACGACAGGGCGGTCAACCACGACGGACACACCACGTCGTTGTTGACGGCTCAAGTCACGGAATTGGTGGACGGCGTTTTCATCGGGTTGTCAATGAACCATTGTCTCGGTGACGGAACATCTTACTGGAATTTCTTCAACACTTGGTCTGAAATTTTCCAAGCGCAAGAAAACAATGTCACTCTTTCCAAGATCTCCAATCCACCAGTGTTGGATCGGTGGTTTCCAGAAGGTCATGGTCCGATTATCAGCCTTCCTTTCACAGACCCGAGTGAGTTCATTGACAGAGTCGAAGCACCAAAACTCAGAGAGAGAATGTTTCATTTCTCCGCAGAATCCCTAGCCAAACTCAAAGCCAAGAAGGCCAATTCAGAGAACGAGACCAGCAACATCTCCACCTTCCAGGCCTTGTCTGCGCTTCTCTGGAGGACTATAACTCGAGCGCGTCTTCTGCCACCAGATCAAGAAACCAGTTGCAGATTGGCTGCCAATAACAGAGCAAGATTAGACCCGCCATTGCCTCCGAATTACTTTGGCAACGCCATTTATCCGATCAAATCAGAACTGATCAATGCGCGCTGTGTGATGATGGGGAGTAGTCCGAGATTCGACATGTATAAAAATGAATTTGGGATGGGAAAAGCTGTGGCTCTACGAAGTGGGTATGCCAACAAGTTTAGTGGAAAAGTGTCGTCGTTTCAAGGGCGCGAAGCAGGAAGCATTGACTTGGAGGTGTGTCTTCTTCCAGAGGTAATGAGGGCTCTTGAATCTGATGATGAGTTTATGGAAGCTGCCTCTGTACCAAGTTATGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010143 GO:0016043 GO:0030154 GO:0032502 GO:0032989 GO:0043170 GO:0044424 GO:0044464 GO:0048468 GO:0048856 GO:0048869 GO:0051179 GO:0071704 GO:0071840 GO:0090558 GO:0090626 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transferase

Protein Analysis

408

Amino Acids

45.61

Weight (kDa)

6.08

Isoelectric Point (pI)

41.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	6 - 320	6e-54	Transferase family
Transferase	PF02458	331 - 399	1.9e-08	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002329)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07850 AT5G42830
fragaria_vesca	FvH4_2g34050 FvH4_2g34060 FvH4_2g34061
malus_domestica	MD08G1096500.v1.1 MD08G1096600.v1.1 MD15G1079200.v1.1 MD15G1079300.v1.1
prunus_persica	Prupe.1G432300_v2.0.a1 Prupe.1G432400_v2.0.a1 Prupe.1G432500_v2.0.a1
pyrus_communis	pycom08g07870 pycom15g07380
rosa_chinensis	RchiOBHm_Chr6g0308291 RchiOBHm_Chr6g0308301 RchiOBHm_Chr6g0308421
rosa_laevigata	RLG00000010650
rosa_multiflora	Rmu_co8463877.1_g000001 Rmu_sc0003583.1_g000001 Rmu_sc0005523.1_g000006 Rmu_sc0011796.1_g000002 Rmu_ssc0000355.1_g000011
rosa_roxburghii	Rroxscaffold_7G00160150 Rroxscaffold_7G00160240 Rroxscaffold_7G00160280
rosa_rugosa	Rorug06G0366000 Rorug06G0366500
rosa_samantha	Rh6AG474900 Rh6AG475000 Rh6AG476200 Rh6BG485500 Rh6BG485600 Rh6BG485700 Rh6BG486400 Rh6CG490600 Rh6CG490800 Rh6CG490900 Rh6CG491600 Rh6DG477200
rosa_wichuraiana	Rw6G041430 Rw6G041500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	422
AccII	CGCG	3 cut(s)	856, 988, 1119
AciI	CCGC	5 cut(s)	239, 245, 422, 741, 923
AclWI	GGATC	1 cut(s)	633
AcsI	RAATTY	4 cut(s)	326, 541, 564, 1037
AcuI	CTGAAG	1 cut(s)	221
AfaI	GTAC	1 cut(s)	1212
AfiI	CCNNNNNNNGG	2 cut(s)	244, 245
AflIII	ACRYGT	2 cut(s)	348, 1023
AgsI	TTSAA	3 cut(s)	550, 1112, 1178
AjiI	CACGTC	1 cut(s)	447
AjnI	CCWGG	2 cut(s)	316, 813
AluBI	AGCT	3 cut(s)	323, 1055, 1202
AluI	AGCT	3 cut(s)	323, 1055, 1202
Alw26I	GTCTC	4 cut(s)	140, 176, 521, 785
AlwI	GGATC	1 cut(s)	633
Ama87I	CYCGRG	2 cut(s)	679, 849
AoxI	GGCC	2 cut(s)	774, 816
ApeKI	GCWGC	3 cut(s)	306, 896, 1202
ApoI	RAATTY	4 cut(s)	326, 541, 564, 1037
Asp700I	GAANNNNTTC	1 cut(s)	545
AspLEI	GCGC	6 cut(s)	577, 829, 856, 988, 990, 1119
AspS9I	GGNCC	1 cut(s)	650
AsuHPI	GGTGA	2 cut(s)	136, 533
AsuII	TTCGAA	1 cut(s)	59
AsuNHI	GCTAGC	1 cut(s)	241
AvaI	CYCGRG	2 cut(s)	679, 849
AvaII	GGWCC	1 cut(s)	650
BaeGI	GKGCMC	1 cut(s)	387
BanII	GRGCYC	1 cut(s)	1174
BbsI	GAAGAC	2 cut(s)	851, 1142
BbvI	GCAGC	3 cut(s)	318, 883, 1189
BccI	CCATC	3 cut(s)	362, 994, 1039
BceAI	ACGGC	2 cut(s)	474, 499
BciT130I	CCWGG	2 cut(s)	318, 815
BclI	TGATCA	2 cut(s)	409, 978
BcoDI	GTCTC	4 cut(s)	140, 176, 521, 785
BfaI	CTAG	2 cut(s)	242, 752
BglI	GCCNNNNNGGC	1 cut(s)	773
BglII	AGATCT	1 cut(s)	603
BisI	GCNGC	3 cut(s)	307, 897, 1203
BlsI	GCNGC	3 cut(s)	308, 898, 1204
Bme1390I	CCNGG	2 cut(s)	318, 815
Bme18I	GGWCC	1 cut(s)	650
BmeT110I	CYCGRG	2 cut(s)	679, 849
BmgBI	CACGTC	1 cut(s)	447
BmgT120I	GGNCC	1 cut(s)	650
BmrFI	CCNGG	2 cut(s)	318, 815
BmtI	GCTAGC	1 cut(s)	245
BpiI	GAAGAC	2 cut(s)	851, 1142
BpmI	CTGGAG	2 cut(s)	339, 856
Bpu14I	TTCGAA	1 cut(s)	59
BpuEI	CTTGAG	2 cut(s)	200, 447
BsaI	GGTCTC	3 cut(s)	140, 176, 785
BsaJI	CCNNGG	2 cut(s)	316, 387
BsaXI	ACNNNNNCTCC	2 cut(s)	136, 166
Bsc4I	CCNNNNNNNGG	2 cut(s)	244, 245
Bse1I	ACTGG	3 cut(s)	542, 617, 882
Bse3DI	GCAATG	1 cut(s)	926
BseBI	CCWGG	2 cut(s)	318, 815
BseDI	CCNNGG	2 cut(s)	316, 387
BseGI	GGATG	2 cut(s)	330, 1050
BseLI	CCNNNNNNNGG	2 cut(s)	244, 245
BseMI	GCAATG	1 cut(s)	926
BseMII	CTCAG	2 cut(s)	42, 730
BseNI	ACTGG	3 cut(s)	542, 617, 882
BsePI	GCGCGC	1 cut(s)	986
BseRI	GAGGAG	1 cut(s)	128
BseSI	GKGCMC	1 cut(s)	387
BseXI	GCAGC	3 cut(s)	318, 883, 1189
Bsh1236I	CGCG	3 cut(s)	856, 988, 1119
BshFI	GGCC	2 cut(s)	776, 818
BsiHKCI	CYCGRG	2 cut(s)	679, 849
BslI	CCNNNNNNNGG	2 cut(s)	244, 245
BsmAI	GTCTC	4 cut(s)	140, 176, 521, 785
BsmI	GAATGC	1 cut(s)	38
BsnI	GGCC	2 cut(s)	776, 818
Bso31I	GGTCTC	3 cut(s)	140, 176, 785
BsoBI	CYCGRG	2 cut(s)	679, 849
Bsp119I	TTCGAA	1 cut(s)	59
Bsp1286I	GDGCHC	2 cut(s)	387, 1174
Bsp143I	GATC	6 cut(s)	409, 603, 625, 871, 963, 978
BspACI	CCGC	5 cut(s)	239, 245, 422, 741, 923
BspANI	GGCC	2 cut(s)	776, 818
BspCNI	CTCAG	2 cut(s)	41, 729
BspFNI	CGCG	3 cut(s)	856, 988, 1119
BspOI	GCTAGC	1 cut(s)	245
BspPI	GGATC	1 cut(s)	633
BspT104I	TTCGAA	1 cut(s)	59
BspTNI	GGTCTC	3 cut(s)	140, 176, 785
BsrDI	GCAATG	1 cut(s)	926
BsrI	ACTGG	3 cut(s)	542, 617, 882
BssECI	CCNNGG	2 cut(s)	316, 387
BssHII	GCGCGC	1 cut(s)	986
BssMI	GATC	6 cut(s)	409, 603, 625, 871, 963, 978
BssT1I	CCWWGG	1 cut(s)	387
Bst2UI	CCWGG	2 cut(s)	318, 815
Bst6I	CTCTTC	1 cut(s)	146
BstBI	TTCGAA	1 cut(s)	59
BstC8I	GCNNGC	2 cut(s)	243, 988
BstDEI	CTNAG	2 cut(s)	28, 716
BstF5I	GGATG	2 cut(s)	330, 1050
BstFNI	CGCG	3 cut(s)	856, 988, 1119
BstHHI	GCGC	6 cut(s)	577, 829, 856, 988, 990, 1119
BstKTI	GATC	6 cut(s)	412, 606, 628, 874, 966, 981
BstMAI	GTCTC	4 cut(s)	140, 176, 521, 785
BstMBI	GATC	6 cut(s)	409, 603, 625, 871, 963, 978
BstMWI	GCNNNNNNNGC	5 cut(s)	115, 312, 773, 824, 862
BstNI	CCWGG	2 cut(s)	318, 815
BstNSI	RCATGY	2 cut(s)	352, 1027
BstSCI	CCNGG	2 cut(s)	316, 813
BstSLI	GKGCMC	1 cut(s)	387
BstUI	CGCG	3 cut(s)	856, 988, 1119
BstV1I	GCAGC	3 cut(s)	318, 883, 1189
BstV2I	GAAGAC	2 cut(s)	851, 1142
BstX2I	RGATCY	1 cut(s)	603
BstYI	RGATCY	1 cut(s)	603
BsuRI	GGCC	2 cut(s)	776, 818
BtrI	CACGTC	1 cut(s)	447
BtsCI	GGATG	2 cut(s)	330, 1050
BtsIMutI	CAGTG	2 cut(s)	93, 624
Cac8I	GCNNGC	2 cut(s)	243, 988
CfoI	GCGC	6 cut(s)	577, 829, 856, 988, 990, 1119
Cfr13I	GGNCC	1 cut(s)	650
CseI	GACGC	1 cut(s)	845
Csp6I	GTAC	1 cut(s)	1211
CspCI	CAANNNNNGTGG	4 cut(s)	603, 638, 1072, 1107
CviAII	CATG	5 cut(s)	106, 335, 349, 647, 1024
CviQI	GTAC	1 cut(s)	1211
DdeI	CTNAG	2 cut(s)	28, 716
DpnI	GATC	6 cut(s)	411, 605, 627, 873, 965, 980
DpnII	GATC	6 cut(s)	409, 603, 625, 871, 963, 978
DrdI	GACNNNNNNGTC	1 cut(s)	422
DseDI	GACNNNNNNGTC	1 cut(s)	422
Eam1104I	CTCTTC	1 cut(s)	146
EarI	CTCTTC	1 cut(s)	146
Eco130I	CCWWGG	1 cut(s)	387
Eco147I	AGGCCT	1 cut(s)	818
Eco24I	GRGCYC	1 cut(s)	1174
Eco31I	GGTCTC	3 cut(s)	140, 176, 785
Eco47I	GGWCC	1 cut(s)	650
Eco57I	CTGAAG	1 cut(s)	221
Eco88I	CYCGRG	2 cut(s)	679, 849
EcoRII	CCWGG	2 cut(s)	316, 813
EcoT14I	CCWWGG	1 cut(s)	387
EcoT38I	GRGCYC	1 cut(s)	1174
ErhI	CCWWGG	1 cut(s)	387
FaeI	CATG	5 cut(s)	109, 338, 352, 650, 1027
FalI	AAGNNNNNCTT	2 cut(s)	62, 94
FatI	CATG	5 cut(s)	105, 334, 348, 646, 1023
FauI	CCCGC	3 cut(s)	238, 246, 930
FbaI	TGATCA	2 cut(s)	409, 978
Fnu4HI	GCNGC	3 cut(s)	307, 897, 1203
FokI	GGATG	2 cut(s)	317, 1057
FriOI	GRGCYC	1 cut(s)	1174
Fsp4HI	GCNGC	3 cut(s)	307, 897, 1203
FspBI	CTAG	2 cut(s)	242, 752
GlaI	GCGC	6 cut(s)	576, 828, 855, 987, 989, 1118
GluI	GCNGC	3 cut(s)	307, 897, 1203
GsuI	CTGGAG	2 cut(s)	339, 856
HaeIII	GGCC	2 cut(s)	776, 818
HgaI	GACGC	1 cut(s)	845
HhaI	GCGC	6 cut(s)	577, 829, 856, 988, 990, 1119
Hin1II	CATG	5 cut(s)	109, 338, 352, 650, 1027
Hin6I	GCGC	6 cut(s)	575, 827, 854, 986, 988, 1117
HinP1I	GCGC	6 cut(s)	575, 827, 854, 986, 988, 1117
HincII	GTYRAC	2 cut(s)	427, 456
HindII	GTYRAC	2 cut(s)	427, 456
HinfI	GANTC	6 cut(s)	5, 65, 699, 746, 1017, 1178
HphI	GGTGA	2 cut(s)	136, 533
Hpy166II	GTNNAC	4 cut(s)	229, 427, 456, 481
Hpy188III	TCNNGA	9 cut(s)	127, 179, 344, 413, 638, 835, 875, 1157, 1175
Hpy8I	GTNNAC	4 cut(s)	229, 427, 456, 481
Hpy99I	CGWCG	3 cut(s)	437, 451, 1108
HpyAV	CCTTC	4 cut(s)	635, 674, 766, 820
HpyCH4IV	ACGT	1 cut(s)	446
HpyCH4V	TGCA	2 cut(s)	306, 888
HpyF10VI	GCNNNNNNNGC	5 cut(s)	115, 312, 773, 824, 862
HpyF3I	CTNAG	2 cut(s)	28, 716
HpySE526I	ACGT	1 cut(s)	446
Hsp92II	CATG	5 cut(s)	109, 338, 352, 650, 1027
HspAI	GCGC	6 cut(s)	575, 827, 854, 986, 988, 1117
Ksp22I	TGATCA	2 cut(s)	409, 978
Kzo9I	GATC	6 cut(s)	409, 603, 625, 871, 963, 978
LmnI	GCTCC	1 cut(s)	320
Lsp1109I	GCAGC	3 cut(s)	318, 883, 1189
MaeI	CTAG	2 cut(s)	242, 752
MaeII	ACGT	1 cut(s)	446
MaeIII	GTNAC	4 cut(s)	256, 466, 521, 589
MalI	GATC	6 cut(s)	411, 605, 627, 873, 965, 980
MboI	GATC	6 cut(s)	409, 603, 625, 871, 963, 978
MboII	GAAGA	5 cut(s)	133, 538, 851, 1142, 1145
MflI	RGATCY	1 cut(s)	603
MhlI	GDGCHC	2 cut(s)	387, 1174
MluCI	AATT	8 cut(s)	172, 326, 473, 541, 564, 778, 937, 1037
MlyI	GAGTC	2 cut(s)	14, 708
MmeI	TCCRAC	2 cut(s)	67, 603
MroXI	GAANNNNTTC	1 cut(s)	545
MspR9I	CCNGG	2 cut(s)	318, 815
Mva1269I	GAATGC	1 cut(s)	38
MvaI	CCWGG	2 cut(s)	318, 815
MvnI	CGCG	3 cut(s)	856, 988, 1119
MwoI	GCNNNNNNNGC	5 cut(s)	115, 312, 773, 824, 862
NdeII	GATC	6 cut(s)	409, 603, 625, 871, 963, 978
NheI	GCTAGC	1 cut(s)	241
NlaIII	CATG	5 cut(s)	109, 338, 352, 650, 1027
NmuCI	GTSAC	4 cut(s)	256, 466, 521, 589
NspI	RCATGY	2 cut(s)	352, 1027
NspV	TTCGAA	1 cut(s)	59
PaeR7I	CTCGAG	1 cut(s)	849
PauI	GCGCGC	1 cut(s)	986
PceI	AGGCCT	1 cut(s)	818
PciI	ACATGT	2 cut(s)	348, 1023
PctI	GAATGC	1 cut(s)	38
PdmI	GAANNNNTTC	1 cut(s)	545
PfeI	GAWTC	4 cut(s)	65, 746, 1017, 1178
PflFI	GACNNNGTC	1 cut(s)	698
PkrI	GCNGC	3 cut(s)	308, 898, 1204
PleI	GAGTC	2 cut(s)	13, 707
PpsI	GAGTC	2 cut(s)	13, 707
PscI	ACATGT	2 cut(s)	348, 1023
Psp6I	CCWGG	2 cut(s)	316, 813
PspGI	CCWGG	2 cut(s)	316, 813
PspPI	GGNCC	1 cut(s)	650
PspXI	VCTCGAGB	1 cut(s)	849
PsuI	RGATCY	1 cut(s)	603
PsyI	GACNNNGTC	1 cut(s)	698
PteI	GCGCGC	1 cut(s)	986
RsaI	GTAC	1 cut(s)	1212
RsaNI	GTAC	1 cut(s)	1211
SatI	GCNGC	3 cut(s)	307, 897, 1203
Sau3AI	GATC	6 cut(s)	409, 603, 625, 871, 963, 978
Sau96I	GGNCC	1 cut(s)	650
SchI	GAGTC	2 cut(s)	14, 708
ScrFI	CCNGG	2 cut(s)	318, 815
SduI	GDGCHC	2 cut(s)	387, 1174
Sfr274I	CTCGAG	1 cut(s)	849
SfuI	TTCGAA	1 cut(s)	59
SinI	GGWCC	1 cut(s)	650
SlaI	CTCGAG	1 cut(s)	849
SmlI	CTYRAG	3 cut(s)	179, 462, 849
SmoI	CTYRAG	3 cut(s)	179, 462, 849
Sse9I	AATT	8 cut(s)	172, 326, 473, 541, 564, 778, 937, 1037
SseBI	AGGCCT	1 cut(s)	818
SsiI	CCGC	5 cut(s)	239, 245, 422, 741, 923
SspMI	CTAG	2 cut(s)	242, 752
StuI	AGGCCT	1 cut(s)	818
StyD4I	CCNGG	2 cut(s)	316, 813
StyI	CCWWGG	1 cut(s)	387
TaiI	ACGT	1 cut(s)	449
TaqI	TCGA	4 cut(s)	59, 702, 850, 1020
TasI	AATT	8 cut(s)	172, 326, 473, 541, 564, 778, 937, 1037
TfiI	GAWTC	4 cut(s)	65, 746, 1017, 1178
TscAI	CASTG	2 cut(s)	100, 624
TseFI	GTSAC	4 cut(s)	256, 466, 521, 589
TseI	GCWGC	3 cut(s)	306, 896, 1202
Tsp45I	GTSAC	4 cut(s)	256, 466, 521, 589
TspDTI	ATGAA	6 cut(s)	319, 481, 521, 679, 722, 1050
TspGWI	ACGGA	3 cut(s)	450, 485, 540
TspRI	CASTG	2 cut(s)	100, 624
Tth111I	GACNNNGTC	1 cut(s)	698
VpaK11BI	GGWCC	1 cut(s)	650
XapI	RAATTY	4 cut(s)	326, 541, 564, 1037
XceI	RCATGY	2 cut(s)	352, 1027
XcmI	CCANNNNNNNNNTGG	1 cut(s)	889
XhoI	CTCGAG	1 cut(s)	849
XmnI	GAANNNNTTC	1 cut(s)	545
XspI	CTAG	2 cut(s)	242, 752

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.