Rh6CG490800

acetyltransferase At3g50280-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0002329
Physical Location & Seq
Reverse (-)
65788209 .. 65790785
2577 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG490800.1

Sequence Viewer

Length: 1269 bp
ATGACGGTGGACAATCTGCTTACTATTTCAGGGGAATGGGATGAAGAGAAGTTGAGACAGCTGTTCACTCTGAGAGAGCAAGAGGCTATTTTGGGTATTCCTGTTACCCAAACTTTAGCTACAGATGTTGATATTTGGCATTTCAATAAGCATGGTAAGTACTCTGTTAAAAGTGGGGTGCAAGACCATCTTTCTCCGTTGGCTGCTGAATTGATAGCTCTTAAAGTTGGTCTACAAGAAGCCATGCTTCGTAGGCCTTGTTCTTTGATGGTGGAGACCGACTGCTTGGAGGCTGTGAAGCTTGTGGTTGAGCCTGGAGAGTGTTTGGCTGAGGGCGGTCACACCACGTCGCTGCTGACGGCTCAAGTCACGGAATTGGTGGACGACGTTTTTATCGGGCTGTCAATGAATCGTGCAGTGGAAGATGGAACATCTTACTGGCATTTCTTCAACACTTTGTCTGAAATTTTCCAAGCACAAGAAAAGAATGTCCTGATTTTAGAGATTTCCAACCCACCAGTGTTGGATCGGTGGTTTCCAGAAGGTCATGGTCCGATTATCAGCCTGCCTTTCACCGACCCAAGTGAGTTCATTGACAGATTTGAAGCACCAAAACTCAGAGAGAGAATGTTTCACTTCTCCACAGAATCCCTAGCCAAACTCAAAGCCAAGTCCAATTCAGAATGCGAGACCAGCAAAATCTCCACCTTCCAGGCCTTGTCTGCGCTTCTCTGGAGAACTATTACTCGAGCGCGTCTTCTGCCAACAGATCAAGAAACCAGTTGCAAATTGACTGCTAATAACAGAGCAAGATTAGACCCGCCATTACCTCCAAATTACTTTGGCAACTCAATTTATCTGATCAGATCTGAGTTGATCAAAGCTGGTGAGTTGCTTGAACACGGGCTTGGATGGGCTGCGTGGAAACTGCACCAGGCTGTGGTTAACCTCAATGACCAAGCACTAAAAGGATTTCTTAATGAATGGTTACGGTCTCTGACTGTGTTTACTATGAGATTTTTCGATCCATTTAGTGTGATGATGGGGAGTAGTCCGAGATTCGACATGTATAAAAATGAATTTGGGATGGGAAAAGCTGTCGCCCTAGGAAGTGGGTATGCCAACAAGTTCAATGGCAAAGTGTCGTGGTTTCAAGGGCGCGAAGCAGGAAGCATCGACTTGGAGGTGTGTCTTCCTCCGGAGGTAATGAGGGCTCTTGAATCTGATGATGAGTTTATGGAAGCTGCCTCTGTACCAAGTTATGAGTAG

Protein Analysis

422

Amino Acids

47.45

Weight (kDa)

5.08

Isoelectric Point (pI)

37.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 111 - 413 1.1e-44 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 940
AccI GTMKAC 1 cut(s) 232
AccII CGCG 2 cut(s) 754, 1161
AccIII TCCGGA 1 cut(s) 1198
AciI CCGC 2 cut(s) 336, 821
AclWI GGATC 2 cut(s) 534, 1019
AcsI RAATTY 2 cut(s) 465, 1079
AfaI GTAC 2 cut(s) 161, 1254
AfiI CCNNNNNNNGG 1 cut(s) 940
AflIII ACRYGT 1 cut(s) 1065
AgsI TTSAA 7 cut(s) 145, 451, 605, 899, 1132, 1154, 1220
AjiI CACGTC 1 cut(s) 348
AjnI CCWGG 3 cut(s) 313, 711, 933
AjuI GAANNNNNNNTTGG 2 cut(s) 891, 923
AluBI AGCT 7 cut(s) 61, 119, 218, 301, 884, 1097, 1244
AluI AGCT 7 cut(s) 61, 119, 218, 301, 884, 1097, 1244
Alw26I GTCTC 4 cut(s) 49, 269, 683, 999
AlwI GGATC 2 cut(s) 534, 1019
Ama87I CYCGRG 1 cut(s) 747
Aor13HI TCCGGA 1 cut(s) 1198
AoxI GGCC 2 cut(s) 254, 714
ApeKI GCWGC 4 cut(s) 203, 352, 917, 1244
ApoI RAATTY 2 cut(s) 465, 1079
AspA2I CCTAGG 1 cut(s) 1105
AspLEI GCGC 3 cut(s) 727, 754, 1161
AspS9I GGNCC 1 cut(s) 551
AsuHPI GGTGA 2 cut(s) 565, 899
AvaI CYCGRG 1 cut(s) 747
AvaII GGWCC 1 cut(s) 551
AvrII CCTAGG 1 cut(s) 1105
BanII GRGCYC 1 cut(s) 1216
BbsI GAAGAC 2 cut(s) 749, 1184
BbvCI CCTCAGC 1 cut(s) 330
BbvI GCAGC 4 cut(s) 190, 339, 904, 1231
BccI CCATC 6 cut(s) 195, 262, 419, 906, 1036, 1081
BceAI ACGGC 1 cut(s) 375
BciT130I CCWGG 3 cut(s) 315, 713, 935
BclI TGATCA 2 cut(s) 861, 876
BcoDI GTCTC 4 cut(s) 49, 269, 683, 999
BfaI CTAG 2 cut(s) 653, 1106
BfmI CTRYAG 1 cut(s) 120
BglII AGATCT 1 cut(s) 866
BisI GCNGC 4 cut(s) 204, 353, 918, 1245
BlnI CCTAGG 1 cut(s) 1105
BlsI GCNGC 4 cut(s) 205, 354, 919, 1246
BmcAI AGTACT 1 cut(s) 161
Bme1390I CCNGG 3 cut(s) 315, 713, 935
Bme18I GGWCC 1 cut(s) 551
BmeT110I CYCGRG 1 cut(s) 747
BmgBI CACGTC 1 cut(s) 348
BmgT120I GGNCC 1 cut(s) 551
BmrFI CCNGG 3 cut(s) 315, 713, 935
BmsI GCATC 1 cut(s) 1182
BpiI GAAGAC 2 cut(s) 749, 1184
BpmI CTGGAG 2 cut(s) 336, 754
Bpu10I CCTNAGC 1 cut(s) 330
BpuEI CTTGAG 1 cut(s) 348
BsaI GGTCTC 3 cut(s) 269, 683, 999
BsaJI CCNNGG 1 cut(s) 1105
BsaWI WCCGGW 1 cut(s) 1198
Bsc4I CCNNNNNNNGG 1 cut(s) 940
Bse1I ACTGG 3 cut(s) 443, 518, 780
BseAI TCCGGA 1 cut(s) 1198
BseBI CCWGG 3 cut(s) 315, 713, 935
BseDI CCNNGG 1 cut(s) 1105
BseGI GGATG 3 cut(s) 46, 917, 1092
BseLI CCNNNNNNNGG 1 cut(s) 940
BseMII CTCAG 4 cut(s) 62, 321, 631, 861
BseNI ACTGG 3 cut(s) 443, 518, 780
BseXI GCAGC 4 cut(s) 190, 339, 904, 1231
BsgI GTGCAG 2 cut(s) 435, 914
Bsh1236I CGCG 2 cut(s) 754, 1161
BshFI GGCC 2 cut(s) 256, 716
BsiHKCI CYCGRG 1 cut(s) 747
BsiSI CCGG 1 cut(s) 1199
BslI CCNNNNNNNGG 1 cut(s) 940
BsmAI GTCTC 4 cut(s) 49, 269, 683, 999
BsmI GAATGC 1 cut(s) 689
BsnI GGCC 2 cut(s) 256, 716
Bso31I GGTCTC 3 cut(s) 269, 683, 999
BsoBI CYCGRG 1 cut(s) 747
Bsp1286I GDGCHC 1 cut(s) 1216
Bsp13I TCCGGA 1 cut(s) 1198
Bsp143I GATC 6 cut(s) 526, 769, 861, 866, 876, 1024
BspACI CCGC 2 cut(s) 336, 821
BspANI GGCC 2 cut(s) 256, 716
BspCNI CTCAG 4 cut(s) 63, 322, 630, 862
BspEI TCCGGA 1 cut(s) 1198
BspFNI CGCG 2 cut(s) 754, 1161
BspPI GGATC 2 cut(s) 534, 1019
BspTNI GGTCTC 3 cut(s) 269, 683, 999
BsrI ACTGG 3 cut(s) 443, 518, 780
BssECI CCNNGG 1 cut(s) 1105
BssMI GATC 6 cut(s) 526, 769, 861, 866, 876, 1024
BssT1I CCWWGG 1 cut(s) 1105
Bst2UI CCWGG 3 cut(s) 315, 713, 935
Bst4CI ACNGT 3 cut(s) 7, 993, 1003
Bst6I CTCTTC 1 cut(s) 39
BstC8I GCNNGC 1 cut(s) 566
BstDEI CTNAG 4 cut(s) 71, 330, 617, 870
BstF5I GGATG 3 cut(s) 46, 917, 1092
BstFNI CGCG 2 cut(s) 754, 1161
BstHHI GCGC 3 cut(s) 727, 754, 1161
BstKTI GATC 6 cut(s) 529, 772, 864, 869, 879, 1027
BstMAI GTCTC 4 cut(s) 49, 269, 683, 999
BstMBI GATC 6 cut(s) 526, 769, 861, 866, 876, 1024
BstMWI GCNNNNNNNGC 4 cut(s) 253, 693, 722, 760
BstNI CCWGG 3 cut(s) 315, 713, 935
BstNSI RCATGY 1 cut(s) 1069
BstSCI CCNGG 3 cut(s) 313, 711, 933
BstSFI CTRYAG 1 cut(s) 120
BstUI CGCG 2 cut(s) 754, 1161
BstV1I GCAGC 4 cut(s) 190, 339, 904, 1231
BstV2I GAAGAC 2 cut(s) 749, 1184
BstX2I RGATCY 1 cut(s) 866
BstYI RGATCY 1 cut(s) 866
BsuRI GGCC 2 cut(s) 256, 716
BtrI CACGTC 1 cut(s) 348
BtsCI GGATG 3 cut(s) 46, 917, 1092
BtsI GCAGTG 1 cut(s) 423
BtsIMutI CAGTG 2 cut(s) 423, 525
Cac8I GCNNGC 1 cut(s) 566
CfoI GCGC 3 cut(s) 727, 754, 1161
Cfr13I GGNCC 1 cut(s) 551
CseI GACGC 1 cut(s) 743
Csp6I GTAC 2 cut(s) 160, 1253
CspCI CAANNNNNGTGG 2 cut(s) 504, 539
CviAII CATG 4 cut(s) 152, 244, 548, 1066
CviQI GTAC 2 cut(s) 160, 1253
DdeI CTNAG 4 cut(s) 71, 330, 617, 870
DpnI GATC 6 cut(s) 528, 771, 863, 868, 878, 1026
DpnII GATC 6 cut(s) 526, 769, 861, 866, 876, 1024
Eam1104I CTCTTC 1 cut(s) 39
EarI CTCTTC 1 cut(s) 39
Eco130I CCWWGG 1 cut(s) 1105
Eco147I AGGCCT 2 cut(s) 256, 716
Eco24I GRGCYC 1 cut(s) 1216
Eco31I GGTCTC 3 cut(s) 269, 683, 999
Eco47I GGWCC 1 cut(s) 551
Eco88I CYCGRG 1 cut(s) 747
EcoRII CCWGG 3 cut(s) 313, 711, 933
EcoT14I CCWWGG 1 cut(s) 1105
EcoT38I GRGCYC 1 cut(s) 1216
ErhI CCWWGG 1 cut(s) 1105
FaeI CATG 4 cut(s) 155, 247, 551, 1069
FaiI YATR 9 cut(s) 153, 245, 549, 1013, 1067, 1071, 1119, 1238, 1263
FalI AAGNNNNNCTT 6 cut(s) 174, 206, 231, 263, 960, 992
FatI CATG 4 cut(s) 151, 243, 547, 1065
FauI CCCGC 1 cut(s) 828
FbaI TGATCA 2 cut(s) 861, 876
FblI GTMKAC 1 cut(s) 232
Fnu4HI GCNGC 4 cut(s) 204, 353, 918, 1245
FokI GGATG 3 cut(s) 53, 924, 1099
FriOI GRGCYC 1 cut(s) 1216
Fsp4HI GCNGC 4 cut(s) 204, 353, 918, 1245
FspBI CTAG 2 cut(s) 653, 1106
GlaI GCGC 3 cut(s) 726, 753, 1160
GluI GCNGC 4 cut(s) 204, 353, 918, 1245
GsuI CTGGAG 2 cut(s) 336, 754
HaeIII GGCC 2 cut(s) 256, 716
HapII CCGG 1 cut(s) 1199
HgaI GACGC 1 cut(s) 743
HhaI GCGC 3 cut(s) 727, 754, 1161
Hin1II CATG 4 cut(s) 155, 247, 551, 1069
Hin6I GCGC 3 cut(s) 725, 752, 1159
HinP1I GCGC 3 cut(s) 725, 752, 1159
HincII GTYRAC 1 cut(s) 946
HindII GTYRAC 1 cut(s) 946
HindIII AAGCTT 1 cut(s) 299
HinfI GANTC 4 cut(s) 409, 647, 1059, 1220
HpaI GTTAAC 1 cut(s) 946
HpaII CCGG 1 cut(s) 1199
HphI GGTGA 2 cut(s) 565, 899
Hpy166II GTNNAC 6 cut(s) 10, 66, 233, 382, 946, 1008
Hpy188III TCNNGA 6 cut(s) 493, 539, 733, 773, 1199, 1217
Hpy8I GTNNAC 6 cut(s) 10, 66, 233, 382, 946, 1008
Hpy99I CGWCG 2 cut(s) 352, 389
HpyAV CCTTC 2 cut(s) 536, 718
HpyCH4III ACNGT 3 cut(s) 7, 993, 1003
HpyCH4IV ACGT 2 cut(s) 347, 387
HpyCH4V TGCA 4 cut(s) 181, 416, 786, 931
HpyF10VI GCNNNNNNNGC 4 cut(s) 253, 693, 722, 760
HpyF3I CTNAG 4 cut(s) 71, 330, 617, 870
HpySE526I ACGT 2 cut(s) 347, 387
Hsp92II CATG 4 cut(s) 155, 247, 551, 1069
HspAI GCGC 3 cut(s) 725, 752, 1159
Kpn2I TCCGGA 1 cut(s) 1198
Ksp22I TGATCA 2 cut(s) 861, 876
KspAI GTTAAC 1 cut(s) 946
Kzo9I GATC 6 cut(s) 526, 769, 861, 866, 876, 1024
Lsp1109I GCAGC 4 cut(s) 190, 339, 904, 1231
LweI GCATC 1 cut(s) 1182
MaeI CTAG 2 cut(s) 653, 1106
MaeII ACGT 2 cut(s) 347, 387
MaeIII GTNAC 4 cut(s) 103, 338, 367, 987
MalI GATC 6 cut(s) 528, 771, 863, 868, 878, 1026
MboI GATC 6 cut(s) 526, 769, 861, 866, 876, 1024
MboII GAAGA 5 cut(s) 56, 434, 439, 749, 1184
MflI RGATCY 1 cut(s) 866
MhlI GDGCHC 1 cut(s) 1216
MluCI AATT 8 cut(s) 209, 374, 465, 676, 788, 835, 852, 1079
MmeI TCCRAC 2 cut(s) 504, 534
MroI TCCGGA 1 cut(s) 1198
MseI TTAA 4 cut(s) 168, 222, 945, 978
MspA1I CMGCKG 1 cut(s) 61
MspI CCGG 1 cut(s) 1199
MspR9I CCNGG 3 cut(s) 315, 713, 935
Mva1269I GAATGC 1 cut(s) 689
MvaI CCWGG 3 cut(s) 315, 713, 935
MvnI CGCG 2 cut(s) 754, 1161
MwoI GCNNNNNNNGC 4 cut(s) 253, 693, 722, 760
NdeII GATC 6 cut(s) 526, 769, 861, 866, 876, 1024
NlaIII CATG 4 cut(s) 155, 247, 551, 1069
NmuCI GTSAC 2 cut(s) 338, 367
NspI RCATGY 1 cut(s) 1069
PaeR7I CTCGAG 1 cut(s) 747
PceI AGGCCT 2 cut(s) 256, 716
PciI ACATGT 1 cut(s) 1065
PctI GAATGC 1 cut(s) 689
PfeI GAWTC 4 cut(s) 409, 647, 1059, 1220
PflMI CCANNNNNTGG 1 cut(s) 940
PkrI GCNGC 4 cut(s) 205, 354, 919, 1246
PscI ACATGT 1 cut(s) 1065
Psp6I CCWGG 3 cut(s) 313, 711, 933
PspGI CCWGG 3 cut(s) 313, 711, 933
PspPI GGNCC 1 cut(s) 551
PspXI VCTCGAGB 1 cut(s) 747
PsrI GAACNNNNNNTAC 2 cut(s) 244, 276
PsuI RGATCY 1 cut(s) 866
PvuII CAGCTG 1 cut(s) 61
RsaI GTAC 2 cut(s) 161, 1254
RsaNI GTAC 2 cut(s) 160, 1253
SaqAI TTAA 4 cut(s) 168, 222, 945, 978
SatI GCNGC 4 cut(s) 204, 353, 918, 1245
Sau3AI GATC 6 cut(s) 526, 769, 861, 866, 876, 1024
Sau96I GGNCC 1 cut(s) 551
ScaI AGTACT 1 cut(s) 161
ScrFI CCNGG 3 cut(s) 315, 713, 935
SduI GDGCHC 1 cut(s) 1216
SfaNI GCATC 1 cut(s) 1182
SfcI CTRYAG 1 cut(s) 120
Sfr274I CTCGAG 1 cut(s) 747
SinI GGWCC 1 cut(s) 551
SlaI CTCGAG 1 cut(s) 747
SmlI CTYRAG 2 cut(s) 363, 747
SmoI CTYRAG 2 cut(s) 363, 747
Sse9I AATT 8 cut(s) 209, 374, 465, 676, 788, 835, 852, 1079
SseBI AGGCCT 2 cut(s) 256, 716
SsiI CCGC 2 cut(s) 336, 821
SspMI CTAG 2 cut(s) 653, 1106
StuI AGGCCT 2 cut(s) 256, 716
StyD4I CCNGG 3 cut(s) 313, 711, 933
StyI CCWWGG 1 cut(s) 1105
TaaI ACNGT 3 cut(s) 7, 993, 1003
TaiI ACGT 2 cut(s) 350, 390
TaqI TCGA 4 cut(s) 748, 1023, 1062, 1176
TaqII GACCGA 1 cut(s) 293
TasI AATT 8 cut(s) 209, 374, 465, 676, 788, 835, 852, 1079
TatI WGTACW 1 cut(s) 159
TfiI GAWTC 4 cut(s) 409, 647, 1059, 1220
Tru1I TTAA 4 cut(s) 168, 222, 945, 978
Tru9I TTAA 4 cut(s) 168, 222, 945, 978
TscAI CASTG 2 cut(s) 423, 525
TseFI GTSAC 2 cut(s) 338, 367
TseI GCWGC 4 cut(s) 203, 352, 917, 1244
Tsp45I GTSAC 2 cut(s) 338, 367
TspDTI ATGAA 5 cut(s) 57, 422, 580, 996, 1092
TspGWI ACGGA 2 cut(s) 186, 386
TspRI CASTG 2 cut(s) 423, 525
Van91I CCANNNNNTGG 1 cut(s) 940
VpaK11BI GGWCC 1 cut(s) 551
XapI RAATTY 2 cut(s) 465, 1079
XceI RCATGY 1 cut(s) 1069
XhoI CTCGAG 1 cut(s) 747
XmaJI CCTAGG 1 cut(s) 1105
XmiI GTMKAC 1 cut(s) 232
XspI CTAG 2 cut(s) 653, 1106
ZrmI AGTACT 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.