Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0002329

Physical Location & Seq

Genomic Coordinates Reverse (-)

69026333 .. 69027352

Gene Structure 1020 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG485600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGCTTCTCTTAGCATGTCCATCTCTGACATTCTTTCACCAACTGATGTGCCCTTGGTGGTTCAGTCCTTGTTTGATCACGATAGGGCGGCACACCACGTCGCTGCTGACGGCTCAAGTCACGGAATTGGTGGACGACGTTTTTATCGGGCTGTCAATGAATCGTGCAGTGGAAGATGGAACATCTTACTGGCATTTCTTCAACACTTTGTCTGAAATTTTCCAAGCACAAGAAAAGAATGTCCTGATTTTAGAGATTTCCAACCCACCAGTGTTGGATCGGTGGTTTCCAGAAGGTCATGGTCCGATTATCAGCCTGCCTTTCACCGACCCAAGTGAGTTCATTGACAGATTTGAAGCACCAAAACTCAGAGAGAGAATGTTTCACTTCTCCACAGAATCCCTAGCCAAACTCAAAGCCAAGTCCAATTCAGAATGCGAGACCAGCAAAATCTCCACCTTCCAGGCCTTGTCTGCGCTTCTCTGGAGAACTATTACTCGAGCGCGTCTTCTGCCAACAGATCAAGAAACCAGTTGCAAATTGACTGCTAATAACAGAGCAAGATTAGACCCGCCATTACCTCCAAATTACTTTGGCAACTCAATTTATCTGATCAGATCTGAGTTGATCAAAGCTGGTGAGTTGCTTGAACACGGGCTTGGATGGGCTGCGTGGAAACTGCACCAGGCTGTGGTTAACCTCAATGACCAAGCACTAAAAGGATTTCTTAATGAATGGTTACGGTCTCTGACTGTGTTTACTATGAGATTTTTCGATCCATTTAGTGTGATGATGGGGAGTAGTCCGAGATTCGACATGTATAAAAATGAATTTGGGATGGGAAAAGCTGTCGCCCTAGGAAGTGGGTATGCCAACAAGTTCAATGGCAAAGTGTCGTGGTTTCAAGGGCGCGAAGCAGGAAGCATCGACTTGGAGGTGTGTCTTCCTCCGGAGGTAATGAGGGCTCTTGAATCTGATGATGAGTTTATGGAAGCTGCCTCTGTACCAAGTTATGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010143 GO:0016043 GO:0030154 GO:0032502 GO:0032989 GO:0043170 GO:0044424 GO:0044464 GO:0048468 GO:0048856 GO:0048869 GO:0051179 GO:0071704 GO:0071840 GO:0090558 GO:0090626 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transferase

Protein Analysis

339

Amino Acids

38.47

Weight (kDa)

5.49

Isoelectric Point (pI)

39.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	31 - 330	1.1e-44	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002329)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07850 AT5G42830
fragaria_vesca	FvH4_2g34050 FvH4_2g34060 FvH4_2g34061
malus_domestica	MD08G1096500.v1.1 MD08G1096600.v1.1 MD15G1079200.v1.1 MD15G1079300.v1.1
prunus_persica	Prupe.1G432300_v2.0.a1 Prupe.1G432400_v2.0.a1 Prupe.1G432500_v2.0.a1
pyrus_communis	pycom08g07870 pycom15g07380
rosa_chinensis	RchiOBHm_Chr6g0308291 RchiOBHm_Chr6g0308301 RchiOBHm_Chr6g0308421
rosa_laevigata	RLG00000010650
rosa_multiflora	Rmu_co8463877.1_g000001 Rmu_sc0003583.1_g000001 Rmu_sc0005523.1_g000006 Rmu_sc0011796.1_g000002 Rmu_ssc0000355.1_g000011
rosa_roxburghii	Rroxscaffold_7G00160150 Rroxscaffold_7G00160240 Rroxscaffold_7G00160280
rosa_rugosa	Rorug06G0366000 Rorug06G0366500
rosa_samantha	Rh6AG474900 Rh6AG475000 Rh6AG476200 Rh6BG485500 Rh6BG485600 Rh6BG485700 Rh6BG486400 Rh6CG490600 Rh6CG490800 Rh6CG490900 Rh6CG491600 Rh6DG477200
rosa_wichuraiana	Rw6G041430 Rw6G041500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	691
AccII	CGCG	2 cut(s)	505, 912
AccIII	TCCGGA	1 cut(s)	949
AciI	CCGC	2 cut(s)	88, 572
AclWI	GGATC	2 cut(s)	285, 770
AcsI	RAATTY	2 cut(s)	216, 830
AfaI	GTAC	1 cut(s)	1005
AfiI	CCNNNNNNNGG	1 cut(s)	691
AflIII	ACRYGT	1 cut(s)	816
AgsI	TTSAA	6 cut(s)	202, 356, 650, 883, 905, 971
AjiI	CACGTC	1 cut(s)	99
AjnI	CCWGG	2 cut(s)	462, 684
AjuI	GAANNNNNNNTTGG	2 cut(s)	642, 674
AluBI	AGCT	3 cut(s)	635, 848, 995
AluI	AGCT	3 cut(s)	635, 848, 995
Alw26I	GTCTC	2 cut(s)	434, 750
AlwI	GGATC	2 cut(s)	285, 770
Ama87I	CYCGRG	1 cut(s)	498
Aor13HI	TCCGGA	1 cut(s)	949
AoxI	GGCC	1 cut(s)	465
ApeKI	GCWGC	3 cut(s)	103, 668, 995
ApoI	RAATTY	2 cut(s)	216, 830
AspA2I	CCTAGG	1 cut(s)	856
AspLEI	GCGC	3 cut(s)	478, 505, 912
AspS9I	GGNCC	1 cut(s)	302
AsuHPI	GGTGA	3 cut(s)	29, 316, 650
AvaI	CYCGRG	1 cut(s)	498
AvaII	GGWCC	1 cut(s)	302
AvrII	CCTAGG	1 cut(s)	856
BaeGI	GKGCMC	1 cut(s)	53
BanII	GRGCYC	1 cut(s)	967
BbsI	GAAGAC	2 cut(s)	500, 935
BbvI	GCAGC	3 cut(s)	90, 655, 982
BccI	CCATC	5 cut(s)	28, 170, 657, 787, 832
BceAI	ACGGC	1 cut(s)	126
BciT130I	CCWGG	2 cut(s)	464, 686
BclI	TGATCA	3 cut(s)	75, 612, 627
BcoDI	GTCTC	2 cut(s)	434, 750
BfaI	CTAG	2 cut(s)	404, 857
BglII	AGATCT	1 cut(s)	617
BisI	GCNGC	4 cut(s)	89, 104, 669, 996
BlnI	CCTAGG	1 cut(s)	856
BlsI	GCNGC	4 cut(s)	90, 105, 670, 997
Bme1390I	CCNGG	2 cut(s)	464, 686
Bme18I	GGWCC	1 cut(s)	302
BmeT110I	CYCGRG	1 cut(s)	498
BmgBI	CACGTC	1 cut(s)	99
BmgT120I	GGNCC	1 cut(s)	302
BmrFI	CCNGG	2 cut(s)	464, 686
BmsI	GCATC	1 cut(s)	933
BpiI	GAAGAC	2 cut(s)	500, 935
BpmI	CTGGAG	1 cut(s)	505
BpuEI	CTTGAG	1 cut(s)	99
BsaI	GGTCTC	2 cut(s)	434, 750
BsaJI	CCNNGG	2 cut(s)	53, 856
BsaWI	WCCGGW	1 cut(s)	949
Bsc4I	CCNNNNNNNGG	1 cut(s)	691
Bse1I	ACTGG	3 cut(s)	194, 269, 531
BseAI	TCCGGA	1 cut(s)	949
BseBI	CCWGG	2 cut(s)	464, 686
BseDI	CCNNGG	2 cut(s)	53, 856
BseGI	GGATG	2 cut(s)	668, 843
BseLI	CCNNNNNNNGG	1 cut(s)	691
BseMII	CTCAG	2 cut(s)	382, 612
BseNI	ACTGG	3 cut(s)	194, 269, 531
BseSI	GKGCMC	1 cut(s)	53
BseXI	GCAGC	3 cut(s)	90, 655, 982
BsgI	GTGCAG	2 cut(s)	186, 665
Bsh1236I	CGCG	2 cut(s)	505, 912
BshFI	GGCC	1 cut(s)	467
BsiHKCI	CYCGRG	1 cut(s)	498
BsiSI	CCGG	1 cut(s)	950
BslI	CCNNNNNNNGG	1 cut(s)	691
BsmAI	GTCTC	2 cut(s)	434, 750
BsmI	GAATGC	1 cut(s)	440
BsnI	GGCC	1 cut(s)	467
Bso31I	GGTCTC	2 cut(s)	434, 750
BsoBI	CYCGRG	1 cut(s)	498
Bsp1286I	GDGCHC	2 cut(s)	53, 967
Bsp13I	TCCGGA	1 cut(s)	949
Bsp143I	GATC	7 cut(s)	75, 277, 520, 612, 617, 627, 775
BspACI	CCGC	2 cut(s)	88, 572
BspANI	GGCC	1 cut(s)	467
BspCNI	CTCAG	2 cut(s)	381, 613
BspEI	TCCGGA	1 cut(s)	949
BspFNI	CGCG	2 cut(s)	505, 912
BspPI	GGATC	2 cut(s)	285, 770
BspTNI	GGTCTC	2 cut(s)	434, 750
BsrI	ACTGG	3 cut(s)	194, 269, 531
BssECI	CCNNGG	2 cut(s)	53, 856
BssMI	GATC	7 cut(s)	75, 277, 520, 612, 617, 627, 775
BssT1I	CCWWGG	2 cut(s)	53, 856
Bst2UI	CCWGG	2 cut(s)	464, 686
Bst4CI	ACNGT	2 cut(s)	744, 754
BstC8I	GCNNGC	1 cut(s)	317
BstDEI	CTNAG	3 cut(s)	10, 368, 621
BstF5I	GGATG	2 cut(s)	668, 843
BstFNI	CGCG	2 cut(s)	505, 912
BstHHI	GCGC	3 cut(s)	478, 505, 912
BstKTI	GATC	7 cut(s)	78, 280, 523, 615, 620, 630, 778
BstMAI	GTCTC	2 cut(s)	434, 750
BstMBI	GATC	7 cut(s)	75, 277, 520, 612, 617, 627, 775
BstMWI	GCNNNNNNNGC	3 cut(s)	444, 473, 511
BstNI	CCWGG	2 cut(s)	464, 686
BstNSI	RCATGY	2 cut(s)	18, 820
BstSCI	CCNGG	2 cut(s)	462, 684
BstSLI	GKGCMC	1 cut(s)	53
BstUI	CGCG	2 cut(s)	505, 912
BstV1I	GCAGC	3 cut(s)	90, 655, 982
BstV2I	GAAGAC	2 cut(s)	500, 935
BstX2I	RGATCY	1 cut(s)	617
BstYI	RGATCY	1 cut(s)	617
BsuRI	GGCC	1 cut(s)	467
BtrI	CACGTC	1 cut(s)	99
BtsCI	GGATG	2 cut(s)	668, 843
BtsI	GCAGTG	1 cut(s)	174
BtsIMutI	CAGTG	2 cut(s)	174, 276
Cac8I	GCNNGC	1 cut(s)	317
CfoI	GCGC	3 cut(s)	478, 505, 912
Cfr13I	GGNCC	1 cut(s)	302
CseI	GACGC	1 cut(s)	494
Csp6I	GTAC	1 cut(s)	1004
CspCI	CAANNNNNGTGG	2 cut(s)	255, 290
CviAII	CATG	3 cut(s)	15, 299, 817
CviQI	GTAC	1 cut(s)	1004
DdeI	CTNAG	3 cut(s)	10, 368, 621
DpnI	GATC	7 cut(s)	77, 279, 522, 614, 619, 629, 777
DpnII	GATC	7 cut(s)	75, 277, 520, 612, 617, 627, 775
Eco130I	CCWWGG	2 cut(s)	53, 856
Eco147I	AGGCCT	1 cut(s)	467
Eco24I	GRGCYC	1 cut(s)	967
Eco31I	GGTCTC	2 cut(s)	434, 750
Eco47I	GGWCC	1 cut(s)	302
Eco88I	CYCGRG	1 cut(s)	498
EcoRII	CCWGG	2 cut(s)	462, 684
EcoT14I	CCWWGG	2 cut(s)	53, 856
EcoT38I	GRGCYC	1 cut(s)	967
ErhI	CCWWGG	2 cut(s)	53, 856
FaeI	CATG	3 cut(s)	18, 302, 820
FaiI	YATR	8 cut(s)	16, 300, 764, 818, 822, 870, 989, 1014
FalI	AAGNNNNNCTT	2 cut(s)	711, 743
FatI	CATG	3 cut(s)	14, 298, 816
FauI	CCCGC	1 cut(s)	579
FbaI	TGATCA	3 cut(s)	75, 612, 627
Fnu4HI	GCNGC	4 cut(s)	89, 104, 669, 996
FokI	GGATG	2 cut(s)	675, 850
FriOI	GRGCYC	1 cut(s)	967
Fsp4HI	GCNGC	4 cut(s)	89, 104, 669, 996
FspBI	CTAG	2 cut(s)	404, 857
GlaI	GCGC	3 cut(s)	477, 504, 911
GluI	GCNGC	4 cut(s)	89, 104, 669, 996
GsuI	CTGGAG	1 cut(s)	505
HaeIII	GGCC	1 cut(s)	467
HapII	CCGG	1 cut(s)	950
HgaI	GACGC	1 cut(s)	494
HhaI	GCGC	3 cut(s)	478, 505, 912
Hin1II	CATG	3 cut(s)	18, 302, 820
Hin6I	GCGC	3 cut(s)	476, 503, 910
HinP1I	GCGC	3 cut(s)	476, 503, 910
HincII	GTYRAC	1 cut(s)	697
HindII	GTYRAC	1 cut(s)	697
HinfI	GANTC	4 cut(s)	160, 398, 810, 971
HpaI	GTTAAC	1 cut(s)	697
HpaII	CCGG	1 cut(s)	950
HphI	GGTGA	3 cut(s)	29, 316, 650
Hpy166II	GTNNAC	3 cut(s)	133, 697, 759
Hpy188III	TCNNGA	7 cut(s)	79, 244, 290, 484, 524, 950, 968
Hpy8I	GTNNAC	3 cut(s)	133, 697, 759
Hpy99I	CGWCG	2 cut(s)	103, 140
HpyAV	CCTTC	2 cut(s)	287, 469
HpyCH4III	ACNGT	2 cut(s)	744, 754
HpyCH4IV	ACGT	2 cut(s)	98, 138
HpyCH4V	TGCA	3 cut(s)	167, 537, 682
HpyF10VI	GCNNNNNNNGC	3 cut(s)	444, 473, 511
HpyF3I	CTNAG	3 cut(s)	10, 368, 621
HpySE526I	ACGT	2 cut(s)	98, 138
Hsp92II	CATG	3 cut(s)	18, 302, 820
HspAI	GCGC	3 cut(s)	476, 503, 910
Kpn2I	TCCGGA	1 cut(s)	949
Ksp22I	TGATCA	3 cut(s)	75, 612, 627
KspAI	GTTAAC	1 cut(s)	697
Kzo9I	GATC	7 cut(s)	75, 277, 520, 612, 617, 627, 775
Lsp1109I	GCAGC	3 cut(s)	90, 655, 982
LweI	GCATC	1 cut(s)	933
MaeI	CTAG	2 cut(s)	404, 857
MaeII	ACGT	2 cut(s)	98, 138
MaeIII	GTNAC	2 cut(s)	118, 738
MalI	GATC	7 cut(s)	77, 279, 522, 614, 619, 629, 777
MboI	GATC	7 cut(s)	75, 277, 520, 612, 617, 627, 775
MboII	GAAGA	4 cut(s)	185, 190, 500, 935
MflI	RGATCY	1 cut(s)	617
MhlI	GDGCHC	2 cut(s)	53, 967
MluCI	AATT	7 cut(s)	125, 216, 427, 539, 586, 603, 830
MmeI	TCCRAC	2 cut(s)	255, 285
MnlI	CCTC	7 cut(s)	591, 710, 928, 946, 954, 957, 1009
MroI	TCCGGA	1 cut(s)	949
MseI	TTAA	2 cut(s)	696, 729
MspI	CCGG	1 cut(s)	950
MspR9I	CCNGG	2 cut(s)	464, 686
Mva1269I	GAATGC	1 cut(s)	440
MvaI	CCWGG	2 cut(s)	464, 686
MvnI	CGCG	2 cut(s)	505, 912
MwoI	GCNNNNNNNGC	3 cut(s)	444, 473, 511
NdeII	GATC	7 cut(s)	75, 277, 520, 612, 617, 627, 775
NlaIII	CATG	3 cut(s)	18, 302, 820
NmuCI	GTSAC	1 cut(s)	118
NspI	RCATGY	2 cut(s)	18, 820
PaeR7I	CTCGAG	1 cut(s)	498
PceI	AGGCCT	1 cut(s)	467
PciI	ACATGT	1 cut(s)	816
PctI	GAATGC	1 cut(s)	440
PfeI	GAWTC	4 cut(s)	160, 398, 810, 971
PflMI	CCANNNNNTGG	1 cut(s)	691
PkrI	GCNGC	4 cut(s)	90, 105, 670, 997
PscI	ACATGT	1 cut(s)	816
Psp6I	CCWGG	2 cut(s)	462, 684
PspGI	CCWGG	2 cut(s)	462, 684
PspPI	GGNCC	1 cut(s)	302
PspXI	VCTCGAGB	1 cut(s)	498
PsuI	RGATCY	1 cut(s)	617
RsaI	GTAC	1 cut(s)	1005
RsaNI	GTAC	1 cut(s)	1004
SaqAI	TTAA	2 cut(s)	696, 729
SatI	GCNGC	4 cut(s)	89, 104, 669, 996
Sau3AI	GATC	7 cut(s)	75, 277, 520, 612, 617, 627, 775
Sau96I	GGNCC	1 cut(s)	302
ScrFI	CCNGG	2 cut(s)	464, 686
SduI	GDGCHC	2 cut(s)	53, 967
SfaNI	GCATC	1 cut(s)	933
Sfr274I	CTCGAG	1 cut(s)	498
SinI	GGWCC	1 cut(s)	302
SlaI	CTCGAG	1 cut(s)	498
SmlI	CTYRAG	2 cut(s)	114, 498
SmoI	CTYRAG	2 cut(s)	114, 498
Sse9I	AATT	7 cut(s)	125, 216, 427, 539, 586, 603, 830
SseBI	AGGCCT	1 cut(s)	467
SsiI	CCGC	2 cut(s)	88, 572
SspMI	CTAG	2 cut(s)	404, 857
StuI	AGGCCT	1 cut(s)	467
StyD4I	CCNGG	2 cut(s)	462, 684
StyI	CCWWGG	2 cut(s)	53, 856
TaaI	ACNGT	2 cut(s)	744, 754
TaiI	ACGT	2 cut(s)	101, 141
TaqI	TCGA	4 cut(s)	499, 774, 813, 927
TasI	AATT	7 cut(s)	125, 216, 427, 539, 586, 603, 830
TauI	GCSGC	1 cut(s)	91
TfiI	GAWTC	4 cut(s)	160, 398, 810, 971
Tru1I	TTAA	2 cut(s)	696, 729
Tru9I	TTAA	2 cut(s)	696, 729
TscAI	CASTG	2 cut(s)	174, 276
TseFI	GTSAC	1 cut(s)	118
TseI	GCWGC	3 cut(s)	103, 668, 995
Tsp45I	GTSAC	1 cut(s)	118
TspDTI	ATGAA	4 cut(s)	173, 331, 747, 843
TspGWI	ACGGA	1 cut(s)	137
TspRI	CASTG	2 cut(s)	174, 276
Van91I	CCANNNNNTGG	1 cut(s)	691
VpaK11BI	GGWCC	1 cut(s)	302
XapI	RAATTY	2 cut(s)	216, 830
XceI	RCATGY	2 cut(s)	18, 820
XhoI	CTCGAG	1 cut(s)	498
XmaJI	CCTAGG	1 cut(s)	856
XspI	CTAG	2 cut(s)	404, 857

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.