Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002329

Physical Location & Seq

Genomic Coordinates Forward (+)

51335090 .. 51337926

Gene Structure 2837 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0366000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGCCATTGCAGGTGCAGCAGCGACAATGGCTCTGGCCAGAGCGACCTCGACTGCTGCTCTGCTAACAACAACAACAACACACAGGGCCAACTGGGTCTTCACTCCTTTCGCTGTTTCTTATTCTTCTTCAAAACCTTCAAGAGCTCTCATTCTCTACTCCAAGCCGGGCTGCTGTTTGTGCGATGGCCTCAAAGAAAAGCTTCAGGCCGCCTTCTTACTCTCCGGCCCTGATTCCATTCACGATGTGGATTTACAGATAAGGGATATTACAAGCAATCCTGAGTGGGAAAGAGCTTACCAGTATGAGATACCTGTTTTGGCTAGAGTGCTATCTGATGGCACTGAGGAAACTCTACCTAGATTATCTCCTCGTCTTGGAGTGGAAATGGTTCAGAAGAAAATAGCTGCAGCCTTGAAACATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010143 GO:0016043 GO:0030154 GO:0032502 GO:0032989 GO:0043170 GO:0044424 GO:0044464 GO:0048468 GO:0048856 GO:0048869 GO:0051179 GO:0071704 GO:0071840 GO:0090558 GO:0090626 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transferase

Protein Analysis

141

Amino Acids

15.29

Weight (kDa)

8.49

Isoelectric Point (pI)

30.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glrx-like	PF05768	50 - 135	1.8e-20	Glutaredoxin-like domain (DUF836)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002329)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07850 AT5G42830
fragaria_vesca	FvH4_2g34050 FvH4_2g34060 FvH4_2g34061
malus_domestica	MD08G1096500.v1.1 MD08G1096600.v1.1 MD15G1079200.v1.1 MD15G1079300.v1.1
prunus_persica	Prupe.1G432300_v2.0.a1 Prupe.1G432400_v2.0.a1 Prupe.1G432500_v2.0.a1
pyrus_communis	pycom08g07870 pycom15g07380
rosa_chinensis	RchiOBHm_Chr6g0308291 RchiOBHm_Chr6g0308301 RchiOBHm_Chr6g0308421
rosa_laevigata	RLG00000010650
rosa_multiflora	Rmu_co8463877.1_g000001 Rmu_sc0003583.1_g000001 Rmu_sc0005523.1_g000006 Rmu_sc0011796.1_g000002 Rmu_ssc0000355.1_g000011
rosa_roxburghii	Rroxscaffold_7G00160150 Rroxscaffold_7G00160240 Rroxscaffold_7G00160280
rosa_rugosa	Rorug06G0366000 Rorug06G0366500
rosa_samantha	Rh6AG474900 Rh6AG475000 Rh6AG476200 Rh6BG485500 Rh6BG485600 Rh6BG485700 Rh6BG486400 Rh6CG490600 Rh6CG490800 Rh6CG490900 Rh6CG491600 Rh6DG477200
rosa_wichuraiana	Rw6G041430 Rw6G041500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2
Acc36I	ACCTGC	1 cut(s)	2
AciI	CCGC	1 cut(s)	210
AcoI	YGGCCR	2 cut(s)	3, 36
AcuI	CTGAAG	1 cut(s)	188
AdeI	CACNNNGTG	1 cut(s)	247
AfiI	CCNNNNNNNGG	1 cut(s)	377
AgsI	TTSAA	3 cut(s)	132, 141, 418
AjuI	GAANNNNNNNTTGG	2 cut(s)	83, 115
AluBI	AGCT	4 cut(s)	146, 202, 296, 407
AluI	AGCT	4 cut(s)	146, 202, 296, 407
Alw21I	GWGCWC	1 cut(s)	148
AoxI	GGCC	6 cut(s)	3, 36, 87, 187, 207, 226
ApeKI	GCWGC	6 cut(s)	17, 20, 56, 171, 407, 410
Asp700I	GAANNNNTTC	2 cut(s)	201, 390
AspS9I	GGNCC	2 cut(s)	87, 227
AsuC2I	CCSGG	1 cut(s)	168
BalI	TGGCCA	2 cut(s)	5, 38
BanII	GRGCYC	1 cut(s)	148
BbsI	GAAGAC	1 cut(s)	91
Bbv12I	GWGCWC	1 cut(s)	148
BbvI	GCAGC	6 cut(s)	29, 32, 43, 158, 394, 422
BccI	CCATC	2 cut(s)	179, 332
BcnI	CCSGG	1 cut(s)	168
BfaI	CTAG	2 cut(s)	324, 360
BfmI	CTRYAG	1 cut(s)	408
BfuAI	ACCTGC	1 cut(s)	2
BisI	GCNGC	7 cut(s)	18, 21, 57, 172, 210, 408, 411
BlsI	GCNGC	7 cut(s)	19, 22, 58, 173, 211, 409, 412
Bme1390I	CCNGG	1 cut(s)	168
BmgT120I	GGNCC	2 cut(s)	87, 227
BmrFI	CCNGG	1 cut(s)	168
BmrI	ACTGGG	1 cut(s)	103
BmuI	ACTGGG	1 cut(s)	103
BpiI	GAAGAC	1 cut(s)	91
BpuMI	CCSGG	1 cut(s)	168
Bsc4I	CCNNNNNNNGG	1 cut(s)	377
Bse1I	ACTGG	2 cut(s)	98, 301
Bse3DI	GCAATG	1 cut(s)	6
BseLI	CCNNNNNNNGG	1 cut(s)	377
BseMI	GCAATG	1 cut(s)	6
BseMII	CTCAG	2 cut(s)	273, 336
BseNI	ACTGG	2 cut(s)	98, 301
BseRI	GAGGAG	1 cut(s)	360
BseXI	GCAGC	6 cut(s)	29, 32, 43, 158, 394, 422
BsgI	GTGCAG	1 cut(s)	36
BshFI	GGCC	6 cut(s)	5, 38, 89, 189, 209, 228
BsiHKAI	GWGCWC	1 cut(s)	148
BsiSI	CCGG	2 cut(s)	167, 225
BslI	CCNNNNNNNGG	1 cut(s)	377
BsnI	GGCC	6 cut(s)	5, 38, 89, 189, 209, 228
Bsp1286I	GDGCHC	1 cut(s)	148
BspACI	CCGC	1 cut(s)	210
BspANI	GGCC	6 cut(s)	5, 38, 89, 189, 209, 228
BspCNI	CTCAG	2 cut(s)	274, 337
BspMAI	CTGCAG	1 cut(s)	412
BspMI	ACCTGC	1 cut(s)	2
BsrDI	GCAATG	1 cut(s)	6
BsrI	ACTGG	2 cut(s)	98, 301
BstDEI	CTNAG	2 cut(s)	282, 345
BstMWI	GCNNNNNNNGC	3 cut(s)	17, 29, 180
BstSCI	CCNGG	1 cut(s)	166
BstSFI	CTRYAG	1 cut(s)	408
BstV1I	GCAGC	6 cut(s)	29, 32, 43, 158, 394, 422
BstV2I	GAAGAC	1 cut(s)	91
BsuRI	GGCC	6 cut(s)	5, 38, 89, 189, 209, 228
BtgZI	GCGATG	1 cut(s)	198
BtsIMutI	CAGTG	1 cut(s)	342
BveI	ACCTGC	1 cut(s)	2
Cfr13I	GGNCC	2 cut(s)	87, 227
DdeI	CTNAG	2 cut(s)	282, 345
DraIII	CACNNNGTG	1 cut(s)	247
EaeI	YGGCCR	2 cut(s)	3, 36
Ecl136II	GAGCTC	1 cut(s)	146
Eco24I	GRGCYC	1 cut(s)	148
Eco53kI	GAGCTC	1 cut(s)	146
Eco57I	CTGAAG	1 cut(s)	188
EcoICRI	GAGCTC	1 cut(s)	146
EcoT38I	GRGCYC	1 cut(s)	148
FaiI	YATR	1 cut(s)	306
FalI	AAGNNNNNCTT	2 cut(s)	186, 218
Fnu4HI	GCNGC	7 cut(s)	18, 21, 57, 172, 210, 408, 411
FriOI	GRGCYC	1 cut(s)	148
Fsp4HI	GCNGC	7 cut(s)	18, 21, 57, 172, 210, 408, 411
FspBI	CTAG	2 cut(s)	324, 360
GluI	GCNGC	7 cut(s)	18, 21, 57, 172, 210, 408, 411
HaeIII	GGCC	6 cut(s)	5, 38, 89, 189, 209, 228
HapII	CCGG	2 cut(s)	167, 225
HindIII	AAGCTT	1 cut(s)	200
HinfI	GANTC	1 cut(s)	233
HpaII	CCGG	2 cut(s)	167, 225
Hpy188I	TCNGA	2 cut(s)	337, 396
Hpy188III	TCNNGA	3 cut(s)	141, 242, 281
HpyAV	CCTTC	2 cut(s)	147, 223
HpyCH4V	TGCA	3 cut(s)	11, 17, 410
HpyF10VI	GCNNNNNNNGC	3 cut(s)	17, 29, 180
HpyF3I	CTNAG	2 cut(s)	282, 345
Lsp1109I	GCAGC	6 cut(s)	29, 32, 43, 158, 394, 422
MaeI	CTAG	2 cut(s)	324, 360
MboII	GAAGA	4 cut(s)	91, 117, 120, 409
MhlI	GDGCHC	1 cut(s)	148
MlsI	TGGCCA	2 cut(s)	5, 38
MluNI	TGGCCA	2 cut(s)	5, 38
MnlI	CCTC	4 cut(s)	58, 200, 340, 381
Mox20I	TGGCCA	2 cut(s)	5, 38
MroXI	GAANNNNTTC	2 cut(s)	201, 390
MscI	TGGCCA	2 cut(s)	5, 38
Msp20I	TGGCCA	2 cut(s)	5, 38
MspI	CCGG	2 cut(s)	167, 225
MspR9I	CCNGG	1 cut(s)	168
MwoI	GCNNNNNNNGC	3 cut(s)	17, 29, 180
NciI	CCSGG	1 cut(s)	168
PaqCI	CACCTGC	1 cut(s)	2
PdmI	GAANNNNTTC	2 cut(s)	201, 390
PfeI	GAWTC	1 cut(s)	233
PkrI	GCNGC	7 cut(s)	19, 22, 58, 173, 211, 409, 412
Psp124BI	GAGCTC	1 cut(s)	148
PspPI	GGNCC	2 cut(s)	87, 227
PstI	CTGCAG	1 cut(s)	412
SacI	GAGCTC	1 cut(s)	148
SatI	GCNGC	7 cut(s)	18, 21, 57, 172, 210, 408, 411
Sau96I	GGNCC	2 cut(s)	87, 227
ScrFI	CCNGG	1 cut(s)	168
SduI	GDGCHC	1 cut(s)	148
SetI	ASST	9 cut(s)	16, 50, 139, 148, 204, 298, 316, 361, 409
SfcI	CTRYAG	1 cut(s)	408
SsiI	CCGC	1 cut(s)	210
SspMI	CTAG	2 cut(s)	324, 360
SstI	GAGCTC	1 cut(s)	148
StyD4I	CCNGG	1 cut(s)	166
TaqI	TCGA	1 cut(s)	50
TauI	GCSGC	1 cut(s)	212
TfiI	GAWTC	1 cut(s)	233
TscAI	CASTG	1 cut(s)	349
TseI	GCWGC	6 cut(s)	17, 20, 56, 171, 407, 410
TspRI	CASTG	1 cut(s)	349
XcmI	CCANNNNNNNNNTGG	1 cut(s)	244
XmnI	GAANNNNTTC	2 cut(s)	201, 390
XspI	CTAG	2 cut(s)	324, 360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.